mRNA_P-littoralis_Contig156.142.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.142.1
Unique NamemRNA_P-littoralis_Contig156.142.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 4.440e-73
Identity = 127/198 (64.14%), Postives = 140/198 (70.71%), Query Frame = 1
Query:    1 EIHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKIDAFRRTWSF 594
            EI+DAF+KCD +WMQ RRK++TSSLFYTLTKCCIQ RGVAH+LR E+E YSSQAIH ARKK+  G  +   + L         F     K      F               RPAKRPLVMLSSMVDVK+KACVDFELTKHFNER AA  MLR VRK DTLVFDRGYYSK+LLRSV DS AFGVWRLKIDAF+ T SF
Sbjct:    8 EIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKIDAFKGTRSF 205          
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K)

HSP 1 Score: 236 bits (601), Expect = 9.120e-72
Identity = 123/198 (62.12%), Postives = 141/198 (71.21%), Query Frame = 1
Query:    1 EIHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKIDAFRRTWSF 594
            EI+DAF+KCD++WMQ RRK++TSSLFYTLT+CC+QGRGV HVL+ E E YSSQA+H ARKK+  G  +   + L         F     K      F     +        SRPAKRPLVMLSSMVDVK+KAC+DFELTKHFNER AA SMLRSV+K DTL+FDRGYYSK LL SV  S AFGVWRLKIDAFR T SF
Sbjct:    8 EIYDAFKKCDQQWMQRRRKMDTSSLFYTLTRCCVQGRGVNHVLKMEDEAYSSQAVHSARKKLPMGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINAGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVQKGDTLLFDRGYYSKDLLHSVHGSHAFGVWRLKIDAFRGTRSF 205          
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 2.300e-71
Identity = 126/199 (63.32%), Postives = 143/199 (71.86%), Query Frame = 1
Query:    1 EIHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFC-HGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKIDAFRRTWSF 594
            EI+DAF+KCD +WMQ RRK++TSSLFYTLTKCCIQ RGVAH+LR E+E YSSQAIH ARKK+  G  +   + L         F   G       SF    ++   +      RPAKRPLVMLSSMVDVK+KACVDFELTKHFNER AA  MLR VRK DTLVFDRGYYSK+LLRSV DS AFGVWRLKI+AF+ T  F
Sbjct:    8 EIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYVTRTNN-KPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRCVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTRPF 205          
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 2.280e-66
Identity = 118/197 (59.90%), Postives = 141/197 (71.57%), Query Frame = 1
Query:    4 IHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKIDAFRRTWSF 594
            +  +++KCD++W+Q RRK++TSSLF+TLT+CC+QGRGV+HVL+ E E YSSQA+H ARKK+  G  +   + L         F     K      F     +        SRPAKRPLVMLSSMVDVK+KAC+DFELTKHFNER AA SMLRSVRK DTL+FDRGYYSK LLRSV DS AFGVWRLKIDAF+ T SF
Sbjct:   24 VEMSYQKCDQQWIQRRRKMDTSSLFFTLTRCCVQGRGVSHVLKMEDEAYSSQAVHSARKKLPIGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINSGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVRKGDTLLFDRGYYSKDLLRSVHDSHAFGVWRLKIDAFKGTRSF 220          
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 8.550e-62
Identity = 112/189 (59.26%), Postives = 137/189 (72.49%), Query Frame = 1
Query:    1 EIHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKI 567
            EI+DAF+KCD +WMQ RRK++TSS+FYT+TKCC + RGV+HVL+ E E YSSQA+H+ARKK+  G  +   + L         F     K      F +   +         RPAKRPLVMLSSMVDV++K+C+DFELTKHF+ER AAVSMLRSVRK+DTL+FDRGYYSK LLRSV DS AFGVWRL+I
Sbjct:    8 EIYDAFKKCDAQWMQRRRKLDTSSVFYTITKCCTRERGVSHVLKMEAEEYSSQAVHLARKKLPIGAFKEVNRFLHRGPHEPRIFAIDGSKVHVHPSFIKAGYKTRTNDKPVPRPAKRPLVMLSSMVDVRTKSCIDFELTKHFDERRAAVSMLRSVRKSDTLLFDRGYYSKDLLRSVHDSGAFGVWRLRI 196          
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 6.350e-37
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 3
Query:  597 ETKCLILGIEARLLKYVINVKTYVCLTNDSSLSRRDMKAIYASRWRVEESFKRLKSNLKLEQAHARTPDLYIQEVEARVLLDTITLRLQR 866
            ET CLILG+++RL+KY IN KTYVCLTND +LSRRD+KAIYASRWR E+S  RLKSN++LE+AHARTPDLYIQEVEARVLLDTITLRLQR
Sbjct:  142 ETTCLILGVQSRLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWRGEQSL-RLKSNVRLEKAHARTPDLYIQEVEARVLLDTITLRLQR 230          
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 6.400e-32
Identity = 82/169 (48.52%), Postives = 96/169 (56.80%), Query Frame = 1
Query:   40 MQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAF 546
            +Q RRKI+TSSLFYTLTK CIQ RGV H+LR++ E YSSQA+H ARKK+  G  +  E +                                       RPA RPLVMLSSMVD           TK FNER A VSMLRSV + DTLVFD+ YYS+ LLR+V DS+AF
Sbjct:  175 IQRRRKIDTSSLFYTLTKRCIQERGVGHILRTDDEQYSSQAVHSARKKLPAGAFK--EPV--------------------------------------PRPATRPLVMLSSMVD-----------TKLFNERKADVSMLRSVHQGDTLVFDKEYYSRGLLRNVHDSKAF 292          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LP47_ECTSI4.440e-7364.14EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNB6_ESV1K9.120e-7262.12EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LP60_ECTSI2.300e-7163.32EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
A0A6H5K772_9PHAE2.280e-6659.90DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JA56_9PHAE8.550e-6259.26DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0K9_9PHAE6.350e-3781.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4T1_9PHAE6.400e-3248.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:418014..418969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1235793.C809_00385
PFAMsDDE_Tnp_1
Model size956
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.19e-05
EggNOG OGsCOG3385@1|root,COG3385@2|Bacteria,1UTR4@1239|Firmicutes,24CFF@186801|Clostridia,27J6S@186928|unclassified Lachnospiraceae
DescriptionTransposase DDE domain
Cds size372
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.971093-UTR-P-littoralis_Contig156:418013..4185971680789746.971093-UTR-P-littoralis_Contig156:418013..418597Pylaiella littoralis U1_48UTRP-littoralis_Contig156 418014..418597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.9820516-CDS-P-littoralis_Contig156:418597..4189691680789746.9820516-CDS-P-littoralis_Contig156:418597..418969Pylaiella littoralis U1_48CDSP-littoralis_Contig156 418598..418969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.142.1prot_P-littoralis_Contig156.142.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 418598..418969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.142.1

>prot_P-littoralis_Contig156.142.1 ID=prot_P-littoralis_Contig156.142.1|Name=mRNA_P-littoralis_Contig156.142.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MVFLETKCLILGIEARLLKYVINVKTYVCLTNDSSLSRRDMKAIYASRWR
VEESFKRLKSNLKLEQAHARTPDLYIQEVEARVLLDTITLRLQRKAGERS
YIYTHDTCVTHVPRNVMFVSNPTR
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mRNA from alignment at P-littoralis_Contig156:418014..418969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.142.1 ID=mRNA_P-littoralis_Contig156.142.1|Name=mRNA_P-littoralis_Contig156.142.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=956bp|location=Sequence derived from alignment at P-littoralis_Contig156:418014..418969+ (Pylaiella littoralis U1_48)
GAAATACATGACGCTTTCGAAAAATGCGACGAACGATGGATGCAAACGCG TCGCAAAATAAACACATCTTCCCTATTTTATACGCTCACGAAGTGCTGTA TTCAGGGAAGAGGTGTTGCTCACGTCCTCAGGTCTGAACACGAGAATTAT TCGTCGCAGGCGATTCATGTGGCTAGGAAAAAAATTGCCTGTGGGTGCAT TCAAGGAGGTGAAAAGATACTTGCACCGAGCGCCACATGAACCACGTGTT TTTGCCATGGACGGTTCAAAGGTACATGTACATCCTTCTTTCCTCAACGC TGGATACAAGACTAGGACAAATGATCAGCCAGTTCACGCCCGGCAAAAAG ACCACTCGTGATGCTCTCTTCGATGGTGGACGTGAAAAGTAAAGCTTGTG TGGATTTCGAGCTCACAAAACACTTTAATGAAAGAACGGCAGCCGTTTCT ATGCTTCGGAGTGTACGGAAGGCAGACACATTGGTGTTCGATCGGGGCTA TTATTCCAAAAGCTTACTTCGTAGTGTGGACGATTCAGAAGCATTTGGTG TGTGGCGCCTGAAGATAGACGCTTTTCGGAGGACATGGTCTTTTTAGAAA CAAAGTGTCTGATACTCGGGATTGAGGCGCGTCTTCTGAAATATGTTATC AACGTAAAAACGTATGTTTGCCTGACAAACGACTCGTCGCTCTCTCGCAG AGATATGAAAGCTATATACGCGTCGAGATGGAGGGTGGAGGAGAGCTTCA AGCGACTTAAATCAAACCTCAAGCTCGAACAAGCGCACGCAAGAACCCCT GATCTGTACATACAGGAGGTAGAAGCGAGAGTTTTGCTTGACACAATAAC TTTGCGATTACAGAGGAAAGCGGGTGAACGGTCCTACATATACACTCATG ACACATGCGTGACACACGTTCCACGTAACGTCATGTTTGTTTCAAACCCC ACAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:418014..418969+

>mRNA_P-littoralis_Contig156.142.1 ID=mRNA_P-littoralis_Contig156.142.1|Name=mRNA_P-littoralis_Contig156.142.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig156:418014..418969+ (Pylaiella littoralis U1_48)
ATGGTCTTTTTAGAAACAAAGTGTCTGATACTCGGGATTGAGGCGCGTCT
TCTGAAATATGTTATCAACGTAAAAACGTATGTTTGCCTGACAAACGACT
CGTCGCTCTCTCGCAGAGATATGAAAGCTATATACGCGTCGAGATGGAGG
GTGGAGGAGAGCTTCAAGCGACTTAAATCAAACCTCAAGCTCGAACAAGC
GCACGCAAGAACCCCTGATCTGTACATACAGGAGGTAGAAGCGAGAGTTT
TGCTTGACACAATAACTTTGCGATTACAGAGGAAAGCGGGTGAACGGTCC
TACATATACACTCATGACACATGCGTGACACACGTTCCACGTAACGTCAT
GTTTGTTTCAAACCCCACAAGA
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