mRNA_P-littoralis_Contig156.142.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI) HSP 1 Score: 238 bits (608), Expect = 4.440e-73 Identity = 127/198 (64.14%), Postives = 140/198 (70.71%), Query Frame = 1
Query: 1 EIHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKIDAFRRTWSF 594
EI+DAF+KCD +WMQ RRK++TSSLFYTLTKCCIQ RGVAH+LR E+E YSSQAIH ARKK+ G + + L F K F RPAKRPLVMLSSMVDVK+KACVDFELTKHFNER AA MLR VRK DTLVFDRGYYSK+LLRSV DS AFGVWRLKIDAF+ T SF
Sbjct: 8 EIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKIDAFKGTRSF 205
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K) HSP 1 Score: 236 bits (601), Expect = 9.120e-72 Identity = 123/198 (62.12%), Postives = 141/198 (71.21%), Query Frame = 1
Query: 1 EIHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKIDAFRRTWSF 594
EI+DAF+KCD++WMQ RRK++TSSLFYTLT+CC+QGRGV HVL+ E E YSSQA+H ARKK+ G + + L F K F + SRPAKRPLVMLSSMVDVK+KAC+DFELTKHFNER AA SMLRSV+K DTL+FDRGYYSK LL SV S AFGVWRLKIDAFR T SF
Sbjct: 8 EIYDAFKKCDQQWMQRRRKMDTSSLFYTLTRCCVQGRGVNHVLKMEDEAYSSQAVHSARKKLPMGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINAGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVQKGDTLLFDRGYYSKDLLHSVHGSHAFGVWRLKIDAFRGTRSF 205
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI) HSP 1 Score: 234 bits (597), Expect = 2.300e-71 Identity = 126/199 (63.32%), Postives = 143/199 (71.86%), Query Frame = 1
Query: 1 EIHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFC-HGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKIDAFRRTWSF 594
EI+DAF+KCD +WMQ RRK++TSSLFYTLTKCCIQ RGVAH+LR E+E YSSQAIH ARKK+ G + + L F G SF ++ + RPAKRPLVMLSSMVDVK+KACVDFELTKHFNER AA MLR VRK DTLVFDRGYYSK+LLRSV DS AFGVWRLKI+AF+ T F
Sbjct: 8 EIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYVTRTNN-KPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRCVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTRPF 205
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE) HSP 1 Score: 231 bits (588), Expect = 2.280e-66 Identity = 118/197 (59.90%), Postives = 141/197 (71.57%), Query Frame = 1
Query: 4 IHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKIDAFRRTWSF 594
+ +++KCD++W+Q RRK++TSSLF+TLT+CC+QGRGV+HVL+ E E YSSQA+H ARKK+ G + + L F K F + SRPAKRPLVMLSSMVDVK+KAC+DFELTKHFNER AA SMLRSVRK DTL+FDRGYYSK LLRSV DS AFGVWRLKIDAF+ T SF
Sbjct: 24 VEMSYQKCDQQWIQRRRKMDTSSLFFTLTRCCVQGRGVSHVLKMEDEAYSSQAVHSARKKLPIGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINSGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVRKGDTLLFDRGYYSKDLLRSVHDSHAFGVWRLKIDAFKGTRSF 220
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE) HSP 1 Score: 219 bits (558), Expect = 8.550e-62 Identity = 112/189 (59.26%), Postives = 137/189 (72.49%), Query Frame = 1
Query: 1 EIHDAFEKCDERWMQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAFGVWRLKI 567
EI+DAF+KCD +WMQ RRK++TSS+FYT+TKCC + RGV+HVL+ E E YSSQA+H+ARKK+ G + + L F K F + + RPAKRPLVMLSSMVDV++K+C+DFELTKHF+ER AAVSMLRSVRK+DTL+FDRGYYSK LLRSV DS AFGVWRL+I
Sbjct: 8 EIYDAFKKCDAQWMQRRRKLDTSSVFYTITKCCTRERGVSHVLKMEAEEYSSQAVHLARKKLPIGAFKEVNRFLHRGPHEPRIFAIDGSKVHVHPSFIKAGYKTRTNDKPVPRPAKRPLVMLSSMVDVRTKSCIDFELTKHFDERRAAVSMLRSVRKSDTLLFDRGYYSKDLLRSVHDSGAFGVWRLRI 196
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE) HSP 1 Score: 141 bits (355), Expect = 6.350e-37 Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 3
Query: 597 ETKCLILGIEARLLKYVINVKTYVCLTNDSSLSRRDMKAIYASRWRVEESFKRLKSNLKLEQAHARTPDLYIQEVEARVLLDTITLRLQR 866
ET CLILG+++RL+KY IN KTYVCLTND +LSRRD+KAIYASRWR E+S RLKSN++LE+AHARTPDLYIQEVEARVLLDTITLRLQR
Sbjct: 142 ETTCLILGVQSRLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWRGEQSL-RLKSNVRLEKAHARTPDLYIQEVEARVLLDTITLRLQR 230
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE) HSP 1 Score: 131 bits (330), Expect = 6.400e-32 Identity = 82/169 (48.52%), Postives = 96/169 (56.80%), Query Frame = 1
Query: 40 MQTRRKINTSSLFYTLTKCCIQGRGVAHVLRSEHENYSSQAIHVARKKIACGCIQGGEKILAPSAT*TTCFCHGRFKGTCTSFFPQRWIQD*DK*SASSRPAKRPLVMLSSMVDVKSKACVDFELTKHFNERTAAVSMLRSVRKADTLVFDRGYYSKSLLRSVDDSEAF 546
+Q RRKI+TSSLFYTLTK CIQ RGV H+LR++ E YSSQA+H ARKK+ G + E + RPA RPLVMLSSMVD TK FNER A VSMLRSV + DTLVFD+ YYS+ LLR+V DS+AF
Sbjct: 175 IQRRRKIDTSSLFYTLTKRCIQERGVGHILRTDDEQYSSQAVHSARKKLPAGAFK--EPV--------------------------------------PRPATRPLVMLSSMVD-----------TKLFNERKADVSMLRSVHQGDTLVFDKEYYSRGLLRNVHDSKAF 292 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig156.142.1 >prot_P-littoralis_Contig156.142.1 ID=prot_P-littoralis_Contig156.142.1|Name=mRNA_P-littoralis_Contig156.142.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp MVFLETKCLILGIEARLLKYVINVKTYVCLTNDSSLSRRDMKAIYASRWRback to top mRNA from alignment at P-littoralis_Contig156:418014..418969+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig156.142.1 ID=mRNA_P-littoralis_Contig156.142.1|Name=mRNA_P-littoralis_Contig156.142.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=956bp|location=Sequence derived from alignment at P-littoralis_Contig156:418014..418969+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig156:418014..418969+ >mRNA_P-littoralis_Contig156.142.1 ID=mRNA_P-littoralis_Contig156.142.1|Name=mRNA_P-littoralis_Contig156.142.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig156:418014..418969+ (Pylaiella littoralis U1_48)back to top |