mRNA_P-littoralis_Contig156.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.24.1
Unique NamemRNA_P-littoralis_Contig156.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: A0A6H5JE48_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE48_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.700e-36
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIAAEI 244
            QTPVQ EM VETTLEKRGAKDARISTG KEK+RFTLCLAVMA+G +VPLRIIFKG PFIPP+ +G+GK+TQPRKGSIAAE+
Sbjct:  170 QTPVQQEMLVETTLEKRGAKDARISTGGKEKDRFTLCLAVMADGGKVPLRIIFKGKPFIPPSTAGRGKNTQPRKGSIAAEV 250          
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: A0A6H5JB72_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB72_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 3.340e-35
Identity = 66/80 (82.50%), Postives = 75/80 (93.75%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIAAE 241
            QTPVQ EMPVETTLEKRGAKDARISTG KEK+RFTLCLAVMA+G +VPL+IIFKG PFIPP+ +G+G++TQPRKGSIAAE
Sbjct:  217 QTPVQQEMPVETTLEKRGAKDARISTGGKEKDRFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAE 296          
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.670e-35
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIAAEI 244
            QTPVQ EMPVETTLEK GAKDARISTG KEKERFTLCLAVMA+G +VPLRIIFKG PFIPP+ + +GK+TQPRKGSIAAE+
Sbjct:  295 QTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEV 375          
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 7.750e-34
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIAAEI 244
            QTPVQHEMPVETTLE  GAKDARI+TG KEKERFTLCLAV A+G +VPLRIIFKGTPF+PP   GKGK+TQPRK SIA E+
Sbjct:  276 QTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEV 356          
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: A0A6H5JFD9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD9_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.610e-33
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIA 235
            QTPVQHEMPVETTLEK GAKDARISTG KEKERFTL LAVMA+G +V  RIIFKGTPFIPPT SGKGKST PRK S+A
Sbjct:  289 QTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVA 366          
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.990e-33
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIAAEI 244
            QTPVQHEMPVETTLEK GAKDARISTG KEKERFTL LAVMA+G +V  RIIFKGTPFIPP  SGKGKST PRK S+A EI
Sbjct:  122 QTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEI 202          
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: D7G5E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.100e-33
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIAAEI 244
            QTPVQHEM VET LEK GAKDARI+TG KEKERFTLCLAV  +G +VPLRIIFKGTPFIPP + GKGK+TQP K SIA E+
Sbjct:   60 QTPVQHEMLVETALEKTGAKDARIATGGKEKERFTLCLAVTGDGKKVPLRIIFKGTPFIPPDRPGKGKATQPWKNSIAWEM 140          
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 5.450e-33
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIAAEI 244
            QTPVQHEMPVET+LEK GAKDARI+TG KEKERFTLCLAV  +  +VPLR IFKGTP IPP + GKGK+TQPRK SIA E+
Sbjct:   60 QTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEM 140          
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.400e-32
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIAAEI 244
            QTPVQHE+PVETTLEK GAKDARISTG KEKERFTL LAVMA+G +V  RIIFKGTPF PPT SGKGKST PRK S+A EI
Sbjct:  122 QTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEI 202          
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.680e-32
Identity = 64/81 (79.01%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 QTPVQHEMPVETTLEKRGAKDARISTGSKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKGSIAAEI 244
            QTPVQHEMPVETTLEK GAKDARISTG KE+ERF L LAVMA+G +V  RI FKGTPF PPT SGKGKST PRK S+A EI
Sbjct:    3 QTPVQHEMPVETTLEKTGAKDARISTGGKEQERFALVLAVMADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEI 83          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE48_9PHAE6.700e-3682.72DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JB72_9PHAE3.340e-3582.50DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE8.670e-3582.72DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE7.750e-3480.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFD9_9PHAE1.610e-3384.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK2_9PHAE1.990e-3382.72DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G5E8_ECTSI2.100e-3377.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXD3_ECTSI5.450e-3376.54DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.400e-3281.48DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT06_9PHAE1.680e-3279.01DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:110159..110625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.6800432-CDS-P-littoralis_Contig156:110158..1102411680789742.6800432-CDS-P-littoralis_Contig156:110158..110241Pylaiella littoralis U1_48CDSP-littoralis_Contig156 110159..110241 +
1680789742.6887348-CDS-P-littoralis_Contig156:110461..1106241680789742.6887348-CDS-P-littoralis_Contig156:110461..110624Pylaiella littoralis U1_48CDSP-littoralis_Contig156 110462..110624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.24.1prot_P-littoralis_Contig156.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 110159..110624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.24.1

>prot_P-littoralis_Contig156.24.1 ID=prot_P-littoralis_Contig156.24.1|Name=mRNA_P-littoralis_Contig156.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
PDACPARDAGRNDSGKAWRQGCSHQHRKQGEGTLHALSCCHGERQQGSTT
DYLQGHAVHPSDQVREGQEHSAAEGVDRGRDC
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mRNA from alignment at P-littoralis_Contig156:110159..110625+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.24.1 ID=mRNA_P-littoralis_Contig156.24.1|Name=mRNA_P-littoralis_Contig156.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=467bp|location=Sequence derived from alignment at P-littoralis_Contig156:110159..110625+ (Pylaiella littoralis U1_48)
CCAGACGCCTGTCCAGCACGAGATGCCGGTCGAAACGACTCTGGAAAAGC GTGGCGCCAAGGATGCTCGCATCAGCACCGGAAGTACGAGTCTTATCTAT AGGTACTTCAACTTTTGTTTTGTGCTGTTGCTTGTCGGGATTTGGTCTCT CTCTAGGTCGACAAGAATTATGATTTTGGTCTACGCTGCTTTACTGTTTG TTCGCTGTTCTGGGTCGGCAGTTGGTCTCTGTCATAATATAAAACAACAG ATGAACTGAAAAACTTTTCTCCCCTCGTCTACTTTGTACTGGTTCCCCCG CAGGCAAGGAGAAGGAACGCTTCACGCTCTGTCTTGCTGTCATGGCGAAC GGCAGCAGGGTTCCACTACGGATTATCTTCAAGGGCACGCCGTTCATCCC TCCGACCAAGTCAGGGAAGGGCAAGAGCACTCAGCCGCGGAAGGGGTCGA TCGCGGCAGAGATTGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:110159..110625+

>mRNA_P-littoralis_Contig156.24.1 ID=mRNA_P-littoralis_Contig156.24.1|Name=mRNA_P-littoralis_Contig156.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig156:110159..110625+ (Pylaiella littoralis U1_48)
CCAGACGCCTGTCCAGCACGAGATGCCGGTCGAAACGACTCTGGAAAAGC
GTGGCGCCAAGGATGCTCGCATCAGCACCGGAAGCAAGGAGAAGGAACGC
TTCACGCTCTGTCTTGCTGTCATGGCGAACGGCAGCAGGGTTCCACTACG
GATTATCTTCAAGGGCACGCCGTTCATCCCTCCGACCAAGTCAGGGAAGG
GCAAGAGCACTCAGCCGCGGAAGGGGTCGATCGCGGCAGAGATTGT
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