mRNA_P-littoralis_Contig155.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig155.11.1
Unique NamemRNA_P-littoralis_Contig155.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: D8LJH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH1_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.330e-17
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  103 VRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLHRVTHNLEFFFPRFPTMCKKIEAKG 351
            VR  N   +  E AFLLL+ RMRYPGR  DL+  FGREY+QLSR+F    D+++E H HRV  NL F+ P   +  + +  KG
Sbjct:   46 VRLENGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMDNLAFWGPHLRSFARAVYRKG 128          
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: A0A1W0WRP1_HYPDU (Uncharacterized protein n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WRP1_HYPDU)

HSP 1 Score: 70.9 bits (172), Expect = 6.510e-13
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    7 IDGITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLHRVT 288
            +D I D     N+R    +L+ L  A  FP +    NR + P      LL+RR+ YP R HDL++ FGR  + LSR FN+V D+V+++  H +T
Sbjct:   33 LDKIADVHCKKNFRFLPKDLQELCDALRFPAFFIADNRSKMPGLEGLCLLLRRLVYPVRLHDLEIVFGRVMSVLSRFFNIVADYVFDHFGHLLT 126          
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: UPI000A2A66BF (protein ALP1-like isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A66BF)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-10
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    7 IDGITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLHRVTHNLEFFFPRFPTMCKKIEAKG 351
            ++ ++D +    +R  K +L RL  A   P         +       L+++RR+ YP RW DLQ  FGR  ++LS IFN VID +YE+H H +   L+  +    T  + I AKG
Sbjct:   91 LEDLSDTQCQQMFRFEKQDLYRLRDALQVPANYICSQGTKATGLEGLLIMLRRLAYPNRWCDLQSLFGRSESELSLIFNEVIDDIYESH-HHLIDALDLVWLDPQTFSQAIHAKG 204          
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: UPI00106C0330 (uncharacterized protein LOC114542457 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C0330)

HSP 1 Score: 66.6 bits (161), Expect = 1.680e-10
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 IDGITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLH 279
            I+ ++D +    +R  K ++ RLF A   P + R   R +     A ++L+RR+ YP RW DL   FGR  +QLS IFN ++D +Y    H
Sbjct:   50 IEDLSDWQCEKMFRFHKDDMLRLFAALRIPAYYRAEQRTKASGMEALMILLRRLAYPNRWCDLVGIFGRSESQLSLIFNKILDDIYNRFGH 140          
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: UPI000F558385 (uncharacterized protein LOC113685269 n=2 Tax=Astrocoeniina TaxID=123757 RepID=UPI000F558385)

HSP 1 Score: 65.9 bits (159), Expect = 2.660e-10
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 1
Query:    7 IDGITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLHRVT 288
            +D + D E    +R RK E+ RL  + + PE          P      LL+RR+ YP R+ DL   FGR   +LS I+N+V+D +Y  H +R++
Sbjct:    4 LDAMDDTECKAEFRFRKNEISRLAESLDIPETFFCHQGTTAPGIEGLCLLLRRLTYPCRYSDLIPRFGRPIPELSMIYNIVLDHIYNTHGYRIS 97          
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: UPI000F54E81C (uncharacterized protein LOC113676671 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F54E81C)

HSP 1 Score: 65.1 bits (157), Expect = 5.940e-10
Identity = 35/100 (35.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:    7 IDGITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLHRVTHNLEFF 306
            +D  +D E  T  R  K  L  L      PE +  V R          +L++R+ YP R+ D+   FGR  T+L  IFN +ID++Y+NH HR+    +FF
Sbjct:   50 VDEWSDVECKTELRFAKKHLPELCECLGIPEKITCVQRTVCGGMEGLCILLKRLAYPCRYTDMVPRFGRNPTELCLIFNTMIDFIYDNHNHRLRSWDQFF 149          
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: A0A836CJM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.310e-9
Identity = 29/79 (36.71%), Postives = 43/79 (54.43%), Query Frame = 1
Query:    4 VIDGITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIF 240
             +    ++  W  +R RK  ++RL RA   P+ V   NR +   + A L+ + R+  P R  D++  FGRE TQLSRIF
Sbjct:   25 TLVSFAEDACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRIF 103          
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: A0A6S7K945_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K945_PARCT)

HSP 1 Score: 60.5 bits (145), Expect = 6.840e-9
Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 1
Query:    7 IDGITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLHRVTHNLE--FFFP-RFPTMCKKIEAKG 351
            +D  TD E   N+R +K ++  L  A   P      N     S     +L+RR+ YP R  D+   FGR  T+LS IFN V+D+V+  H H +  NL   +  P +   M + +  KG
Sbjct:   50 LDKYTDEECVLNFRFQKVDVLHLVTALRLPNQFLCKNGTIAGSLGGLCVLLRRLAYPNRLTDMIAMFGRSKTELSMIFNNVVDFVFAQH-HSLLSNLNVPWLAPEKLMEMTRAVHEKG 166          
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: A0A6P8HEE0_ACTTE (uncharacterized protein LOC116291725 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HEE0_ACTTE)

HSP 1 Score: 62.0 bits (149), Expect = 7.390e-9
Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 1
Query:   16 ITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLH 279
            ITD +  T +R +K ++  L      PE      R +     A ++L+RR+ YP RW DL   FGR  ++LS IFN V+D +Y+   H
Sbjct:   57 ITDADCETMFRFQKNDMEHLLDCLQIPEHFVCSQRTKATGMEALMILLRRLAYPNRWCDLVPIFGRPESELSLIFNKVLDDIYDRFKH 144          
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Match: UPI00106D38F2 (uncharacterized protein LOC114539259 n=4 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D38F2)

HSP 1 Score: 61.6 bits (148), Expect = 1.010e-8
Identity = 31/101 (30.69%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    7 IDGITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFLLLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLHRVTHNLEFFF 309
            ++ + + E     R RK ++  L  A   PE+ +     +         +++R  YP R+ D+   FGR   +LS I NVV+D++Y++H HRV+H  E  F
Sbjct:   49 LEKLENTECEAELRFRKNDIPELAEALGIPEYFKCPQGTKADGLEGLCAVLKRFAYPCRYSDMIPLFGRAVPELSMITNVVVDYIYDHHGHRVSHWNEMLF 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig155.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJH1_ECTSI4.330e-1748.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1W0WRP1_HYPDU6.510e-1338.30Uncharacterized protein n=1 Tax=Hypsibius dujardin... [more]
UPI000A2A66BF1.340e-1033.91protein ALP1-like isoform X1 n=2 Tax=Exaiptasia di... [more]
UPI00106C03301.680e-1036.26uncharacterized protein LOC114542457 n=1 Tax=Dendr... [more]
UPI000F5583852.660e-1035.11uncharacterized protein LOC113685269 n=2 Tax=Astro... [more]
UPI000F54E81C5.940e-1035.00uncharacterized protein LOC113676671 n=1 Tax=Pocil... [more]
A0A836CJM3_9STRA4.310e-936.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S7K945_PARCT6.840e-933.05Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A6P8HEE0_ACTTE7.390e-936.36uncharacterized protein LOC116291725 n=1 Tax=Actin... [more]
UPI00106D38F21.010e-830.69uncharacterized protein LOC114539259 n=4 Tax=Dendr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig155contigP-littoralis_Contig155:20185..21349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7668.SPU_016560-tr
PFAMsDDE_Tnp_4
Model size353
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.77e-08
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota,3A38W@33154|Opisthokonta,3BS4I@33208|Metazoa,3D9UV@33213|Bilateria
DescriptionDDE superfamily endonuclease
Cds size351
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.997318-CDS-P-littoralis_Contig155:20185..203661680789739.997318-CDS-P-littoralis_Contig155:20185..20366Pylaiella littoralis U1_48CDSP-littoralis_Contig155 20186..20366 -
1680789740.0072877-CDS-P-littoralis_Contig155:21179..213491680789740.0072877-CDS-P-littoralis_Contig155:21179..21349Pylaiella littoralis U1_48CDSP-littoralis_Contig155 21180..21349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig155.11.1prot_P-littoralis_Contig155.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig155 20186..21349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig155.11.1

>prot_P-littoralis_Contig155.11.1 ID=prot_P-littoralis_Contig155.11.1|Name=mRNA_P-littoralis_Contig155.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
PVIDGITDNEAWTNYRSRKPELRRLFRAFNFPEWVRPVNRGRYPSESAFL
LLIRRMRYPGRWHDLQVEFGREYTQLSRIFNVVIDWVYENHLHRVTHNLE
FFFPRFPTMCKKIEAKG
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mRNA from alignment at P-littoralis_Contig155:20185..21349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig155.11.1 ID=mRNA_P-littoralis_Contig155.11.1|Name=mRNA_P-littoralis_Contig155.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1165bp|location=Sequence derived from alignment at P-littoralis_Contig155:20185..21349- (Pylaiella littoralis U1_48)
CCTGTCATCGACGGCATCACCGACAACGAAGCGTGGACAAACTACCGGAG CCGAAAGCCGGAGCTACGACGTTTGTTCCGGGCGTTCAATTTCCCGGAGT GGGTTCGCCCGGTCAATCGCGGCCGCTACCCCAGCGAGAGCGCCTTCCTC CTTCTCATTAGGCGCATGAGGTAAGCTGTGTTCTATGCCGTCCAGTAGAC AAAGTGTTCGTTGTACAGGTCACACTCGACAGCGTGCCGTTACAACATCC ACGCCTCAGCTCATAAACTCGAATTGTACAGCTGTGTATAGTACAGTTAT ACAGCAGTCGTGCATATATACTGCTGTATAACTAAAGGGATGACAACACA CAAACAATACGAAGTAAATAGCGGCACATGATTTGATCGCGTTGAAACAC GAGTCGTGTACTTTGATGAAGACAAAGTCATGATCATATGACACAAATGT ATAGGTAAAGCTGCCGTCGTTTCATATCATACCACGTACGCTGCAGCTGC CCTTCTCGTACAACGTTCTGGTACAGCAGTAGCCCGCCTTACAACACGAA GGTTTCCCTGGTCACGCTACTTTTCCCTGGTCTCCAAAATGCGATTGCGC TTAAAAAAAACGCGTGGTACAGCAGAAACGTCTGCAAAATACTATAATGC ATAGAACGCACGGCAATACTGGGGCGTACACAGAGTGCACAGCCCTCATT CTATAATAACTTCATTGGTAACCCATGGTAACCTACCAAAGGCATGTCGC CGGTGATTTTGTATTGCATACCTCATTTGAAGCGATTCGACACATGCAAC CCTACTCGTATACTCGTACAGCAGTCGCATGGATGCATTTCGTGTCAAAC AAACAGCAGTAAAAGCCCGCACTTCTTACTATTTTTTTGCCGGAAACGCC CGACTTCGAGGCGCACGAAAATGGTAGCTTTTGTTTACCTCTCGCTTCGT GTTTCCCCTCACCTGTGGCGTGCTCCACCTCAGGTATCCTGGGCGGTGGC ATGACTTACAGGTGGAATTCGGCCGAGAGTACACGCAGTTGTCGCGAATT TTCAACGTTGTCATCGACTGGGTGTACGAAAACCACCTGCACAGGGTGAC GCACAATCTTGAGTTCTTCTTTCCCCGCTTTCCAACGATGTGCAAGAAGA TCGAGGCGAAAGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig155:20185..21349-

>mRNA_P-littoralis_Contig155.11.1 ID=mRNA_P-littoralis_Contig155.11.1|Name=mRNA_P-littoralis_Contig155.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig155:20185..21349- (Pylaiella littoralis U1_48)
CCTGTCATCGACGGCATCACCGACAACGAAGCGTGGACAAACTACCGGAG
CCGAAAGCCGGAGCTACGACGTTTGTTCCGGGCGTTCAATTTCCCGGAGT
GGGTTCGCCCGGTCAATCGCGGCCGCTACCCCAGCGAGAGCGCCTTCCTC
CTTCTCATTAGGCGCATGAGGTATCCTGGGCGGTGGCATGACTTACAGGT
GGAATTCGGCCGAGAGTACACGCAGTTGTCGCGAATTTTCAACGTTGTCA
TCGACTGGGTGTACGAAAACCACCTGCACAGGGTGACGCACAATCTTGAG
TTCTTCTTTCCCCGCTTTCCAACGATGTGCAAGAAGATCGAGGCGAAAGG
T
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