mRNA_P-littoralis_Contig1549.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1549.1.1
Unique NamemRNA_P-littoralis_Contig1549.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Match: D8LDI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI7_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 6.360e-7
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  180 ITENALSIIADDG*KSHSLRTRSNHVGSSFL*ANQKSLVDRERSGRCLTMGK 335
            +TE A SIIA+DG +SHSLRTRSNH GSS L  +QKS V+ ++SGR LT+ K
Sbjct:    1 MTEKARSIIAEDGCRSHSLRTRSNHDGSSSLLHSQKSRVEVDKSGRLLTVEK 52          
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Match: A0A6H5JEX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.730e-6
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  187 IVKHLPDLSLSTKD---------FWLAYKKELPTWFDLVRKLWLFQPSSAMMERAFSVMNNVFGKQQMTLMNDLFELTVMLRHNRG 417
            ++K   D  ++  D         FW   KK+LPTW  LV  + L QPSSA MER FS++   F ++Q  + +D    +V+L++NRG
Sbjct:   69 LLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRG 154          
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Match: A0A6H5JZH8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.040e-6
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1
Query:  205 DLSLSTKDFWLAYKKELPTWFDLVRKLWLFQPSSAMMERAFSVMNNVFGKQQMTLMNDLFELTVMLRHNRG 417
            D       FW   KK LPTW +LV  + L QPSSA MER FS++   F ++Q ++ +D    + +L+++RG
Sbjct:  320 DTDYDNMTFWSDNKKNLPTWHELVLDVVLLQPSSAFMERVFSILRCCFSERQESVYSDRICASALLKYSRG 390          
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Match: A0A6H5KCX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.740e-6
Identity = 33/97 (34.02%), Postives = 49/97 (50.52%), Query Frame = 1
Query:  127 PASEGQMFSNLTK*VVTYFPIVKHLPDLSLSTKDFWLAYKKELPTWFDLVRKLWLFQPSSAMMERAFSVMNNVFGKQQMTLMNDLFELTVMLRHNRG 417
            P  + +M   L K    Y+       D+      FW   +K LPTW  LV  + L QPSSA MER FS++   F ++Q  + +D    + +L++NRG
Sbjct:   59 PFVKSKMVKGLLKEKEDYYMAASDT-DIEYGHMAFWKDNEKRLPTWHALVLDVALLQPSSAFMERVFSILPCCFNERQEHVYSDRICASALLKYNRG 154          
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Match: A0A6H5KL31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL31_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.840e-6
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 1
Query:  127 PASEGQMFSNLTK*VVTYFPIVKHLPDLSLSTKDFWLAYKKELPTWFDLVRKLWLFQPSSAMMERAFSVMNNVFGKQQMTLMNDLFELTVMLRHNRG 417
            P    +M   L K    Y+    +  D+      FW   KK LPTW  LV  + L  PSSA MER FS++   F ++Q  + +D    + +L+ NRG
Sbjct:  475 PFVNSKMVKGLLKEKEGYYMAASNNTDIEYGHMAFWKDKKKRLPTWHALVLDVALSPPSSAYMERVFSILRCCFNERQQHVYSDRICASALLKFNRG 571          
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Match: A0A6H5JD81_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD81_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.270e-5
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  187 IVKHLPDLSLSTKD---------FWLAYKKELPTWFDLVRKLWLFQPSSAMMERAFSVMNNVFGKQQMTLMNDLFELTVMLRHNRG 417
            ++K   D  ++  D         FW   KK+LPTW  LV  + L QPSSA MER FS++   F ++Q  + +D    +V+L++NRG
Sbjct:  597 LLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRG 682          
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Match: A0A6H5KTX0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.320e-5
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  187 IVKHLPDLSLSTKD---------FWLAYKKELPTWFDLVRKLWLFQPSSAMMERAFSVMNNVFGKQQMTLMNDLFELTVMLRHNRG 417
            ++K   D  ++  D         FW   KK+LPTW  LV  + L QPSSA MER FS++   F ++Q  + +D    +V+L++NRG
Sbjct:  680 LLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRG 765          
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Match: A0A1X7V8N5_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V8N5_AMPQE)

HSP 1 Score: 55.5 bits (132), Expect = 1.970e-5
Identity = 26/67 (38.81%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  214 LSTKDFWLAYKKELPTWFDLVRKLWLFQPSSAMMERAFSVMNNVFGKQQMTLMNDLFELTVMLRHNR 414
            L+  +F  A+  +LP+W +  +K+ L QPSSA +ERAFSV    F +QQ++ + D  E ++M ++N+
Sbjct:  123 LTQLEFQKAHADKLPSWGETAKKVLLLQPSSAAVERAFSVYKFTFSEQQLSSLEDYIEASMMPQYNK 189          
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Match: A0A1X7TYF9_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TYF9_AMPQE)

HSP 1 Score: 56.2 bits (134), Expect = 6.610e-5
Identity = 25/69 (36.23%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  205 DLSLSTKDFWLAYKKELPTWFDLVRKLWLFQPSSAMMERAFSVMNNVFGKQQMTLMNDLFELTVMLRHN 411
            D  +   ++W   + +LP W    +K++L QPSSA +ER FS++ + FG +Q T + D  E ++ML++N
Sbjct:  582 DKEVCPLNWWKQNQDDLPVWSREAKKVFLLQPSSASVERVFSLLKSSFGDKQETALQDYIEASLMLQYN 650          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1549.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LDI7_ECTSI6.360e-763.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEX4_9PHAE1.730e-637.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZH8_9PHAE5.040e-639.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX4_9PHAE5.740e-634.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL31_9PHAE8.840e-634.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD81_9PHAE1.270e-537.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTX0_9PHAE1.320e-537.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A1X7V8N5_AMPQE1.970e-538.81Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A1X7TYF9_AMPQE6.610e-536.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1549contigP-littoralis_Contig1549:44..1204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1150
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.6507487-UTR-P-littoralis_Contig1549:43..3521680789739.6507487-UTR-P-littoralis_Contig1549:43..352Pylaiella littoralis U1_48UTRP-littoralis_Contig1549 44..352 +
1680789739.6888576-UTR-P-littoralis_Contig1549:487..10841680789739.6888576-UTR-P-littoralis_Contig1549:487..1084Pylaiella littoralis U1_48UTRP-littoralis_Contig1549 488..1084 +
1680789739.7096417-UTR-P-littoralis_Contig1549:1095..12041680789739.7096417-UTR-P-littoralis_Contig1549:1095..1204Pylaiella littoralis U1_48UTRP-littoralis_Contig1549 1096..1204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.678869-CDS-P-littoralis_Contig1549:352..4871680789739.678869-CDS-P-littoralis_Contig1549:352..487Pylaiella littoralis U1_48CDSP-littoralis_Contig1549 353..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1549.1.1prot_P-littoralis_Contig1549.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1549 353..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1549.1.1

>prot_P-littoralis_Contig1549.1.1 ID=prot_P-littoralis_Contig1549.1.1|Name=mRNA_P-littoralis_Contig1549.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
MMERAFSVMNNVFGKQQMTLMNDLFELTVMLRHNRGVRRDARKD*
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mRNA from alignment at P-littoralis_Contig1549:44..1204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1549.1.1 ID=mRNA_P-littoralis_Contig1549.1.1|Name=mRNA_P-littoralis_Contig1549.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1161bp|location=Sequence derived from alignment at P-littoralis_Contig1549:44..1204+ (Pylaiella littoralis U1_48)
ACAGCACACAGCACACAGCACACAGCACACAGCACACAGCACACTACAGC CAACACGCCAACACGCCGGGCGCGTACGAGCTGCCGACTGCAGACTGGGC TATCACGATACACGATATACGCCGAGCCTGCTTCTGAAGGGCAGATGTTC AGCAACCTGACGAAGTAGGTGGTGACCTACTTCCCCATCGTTAAGCACCT TCCCGACCTCTCCCTATCAACCAAGGATTTTTGGTTGGCTTACAAGAAGG AACTTCCCACGTGGTTTGACCTAGTCCGCAAGCTGTGGCTTTTTCAACCA TCGTCGGCAATGATGGAGAGGGCGTTTTCCGTGATGAACAATGTCTTCGG AAAGCAGCAGATGACATTGATGAATGACCTGTTCGAGCTGACAGTCATGC TGCGCCACAACCGTGGGGTTCGACGGGATGCCAGAAAGGATTAGGCAGGA CATTCCTTAATACATGCAGACGACGGGGGGTGCCGGGTGCCGGCAAGGAG GGAGGTAGAGACGACTAGGAAGCCTCGAGCAGTAGGTTGAAGTGCTTCCC AAACTAGTGCAGTGCAGTCGTTAAATGGTGTGACATTTGACGAGTGAACG TCAAGGTCGGGATCGGGGGTAATACCTTGATATTGGGCGCCATTCATTTC ATGGTAGGTAGTGTAGCGGCCATTTGATATACGTGGCTAATTGTTTTGTG TGTCTGGGGCCGATTAATGTTCCTCTGGTCTAAGCTGCGCAGAGGACATC GTGAACTAGCTCAGCACTCTTCCTCTAGATTTCTTCTCTAGGGGTTTTCT GGGTGTCATTTTTTACTCATCTAGGAGTAAATATGGAACGTGGAGGCAGA CCTAAGGTCACGGACATCAAGCACGGTCGCTAGTAGGAGCAGAGGTTTTG ACGGAAAGGGATACGGTGAAAATTGGGTGTGACCACGAAAAAAGAGTGAC GAGTGAAGCTTCTTCTGTTTCTCTATAAAATGGCAGTCTACACAAGGGCA TCGCAGTTTGTTTCATCCCACTAATACGCTGTTCATCCCACCAAAGACGA AACAATGTGGCGAGAATGGCCCTCAGGCAAGTCTAAGGCACCTTCTCAGG CACCGCCAGGCATGAACTAAGGCATCTAAGGCAATAATTATCCTCAGGCA AGTCTCAGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1549:44..1204+

>mRNA_P-littoralis_Contig1549.1.1 ID=mRNA_P-littoralis_Contig1549.1.1|Name=mRNA_P-littoralis_Contig1549.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig1549:44..1204+ (Pylaiella littoralis U1_48)
ATGATGGAGAGGGCGTTTTCCGTGATGAACAATGTCTTCGGAAAGCAGCA
GATGACATTGATGAATGACCTGTTCGAGCTGACAGTCATGCTGCGCCACA
ACCGTGGGGTTCGACGGGATGCCAGAAAGGATTAG
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