mRNA_P-littoralis_Contig1544.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1544.6.1
Unique NamemRNA_P-littoralis_Contig1544.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1544.6.1 vs. uniprot
Match: O78798_PYLLI (DNA-directed RNA polymerase n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78798_PYLLI)

HSP 1 Score: 679 bits (1751), Expect = 6.620e-234
Identity = 348/415 (83.86%), Postives = 380/415 (91.57%), Query Frame = 1 
Query:    1 MTKKIQIDNIKSNIEPFISNKTIIFNTLERAKLMLNETSPRSAQYFLEKELEHKLTTNPLSYLAQINNNKIKESKAHLNDLAKKILEKSRLPQELKTFMTSELLTAISLTILTKLFHKTKKSDSRISQTALIRAISDHFIRQLSLQREKQRYKEXXXXXXXXXXXTKLKESSKKKEEQKILKTDTAARTLAAKIVDVLSHPEVNVCKIYRETPSVTRPSKIRTTNYLCLSDKWAGVAKQFENTFTSLPMLCPPLTWELQETNPYNKIESIIQGINLKGGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSLAFRINNDLLKIIKENKLLIPNYKENYRITRQTREEYCGSIYQSKKAEIHDSATNYIAETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISP 1245
            MTKKIQIDNIK NI+PFISNKT+IFNTLERAKLMLNETS +SAQYFLE+ELEHKLTTNPL YL Q+NNN+IKESKAHLND AKKILEKSRLP+ELKTFMTSELLTAISLTILTKLFHK    DSRISQTALIRAI DHF+RQLSLQR+K+ YKE           TKLK+SSKKKEEQKILKTDTAARTLAAKIV VLS+PE+++C+IY+E P    PS+IRTTNYLCLSD+W  VAKQ+ENTFT LPMLCPPLTWELQETNPYNKIESIIQGINL+GGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSL FRINNDLLKIIKENKLLIPNYKE+Y + +QTR+EYCGS++++++AE HDSATNY+AETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISP
Sbjct:    1 MTKKIQIDNIKLNIKPFISNKTMIFNTLERAKLMLNETSAKSAQYFLERELEHKLTTNPLPYLGQVNNNRIKESKAHLNDAAKKILEKSRLPEELKTFMTSELLTAISLTILTKLFHKASAQDSRISQTALIRAILDHFVRQLSLQRDKEIYKEENDGEK-----TKLKKSSKKKEEQKILKTDTAARTLAAKIVGVLSNPEIDICRIYQENPYSKSPSRIRTTNYLCLSDEWVEVAKQYENTFTCLPMLCPPLTWELQETNPYNKIESIIQGINLRGGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSLGFRINNDLLKIIKENKLLIPNYKESYMVAQQTRKEYCGSMFKTRRAEEHDSATNYLAETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISP 410
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BLAST of mRNA_P-littoralis_Contig1544.6.1 vs. uniprot
Match: A0A8F0K156_9PHAE (DNA-directed RNA polymerase n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K156_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.930e-18
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 2 
Query: 1337 YDQAIYKEFPEFKTFTDQVDKIVNIRTKLNLGINFNISEIFKTNQYYNMDKATTYSFRDFDGKSKRVTMYIPE-----KITSSYKRYEANPNARKI 1609
            Y  ++Y +FP FK    Q+D I+  R++LNL IN NIS I+KT QYYNMDKA TY+FR +D  SK++ MYIPE     K  ++ KR+EA  N  K+
Sbjct:   96 YPSSLYNKFPSFKLLKKQIDIIIAARSELNLPINLNISAIYKTTQYYNMDKAITYTFRGYDNTSKKIKMYIPENELYDKKANTPKRFEAKVNKNKM 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1544.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
O78798_PYLLI6.620e-23483.86DNA-directed RNA polymerase n=1 Tax=Pylaiella litt... [more]
A0A8F0K156_9PHAE2.930e-1850.00DNA-directed RNA polymerase n=1 Tax=Desmarestia ac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1544contigP-littoralis_Contig1544:8003..9972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1970
Hectar predicted targeting categoryother localisation
Exons1
Cds size1278
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.3317428-UTR-P-littoralis_Contig1544:8002..86941680789739.3317428-UTR-P-littoralis_Contig1544:8002..8694Pylaiella littoralis U1_48UTRP-littoralis_Contig1544 8003..8694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.3427281-CDS-P-littoralis_Contig1544:8694..99721680789739.3427281-CDS-P-littoralis_Contig1544:8694..9972Pylaiella littoralis U1_48CDSP-littoralis_Contig1544 8695..9972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1544.6.1prot_P-littoralis_Contig1544.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1544 8695..9972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1544.6.1

>prot_P-littoralis_Contig1544.6.1 ID=prot_P-littoralis_Contig1544.6.1|Name=mRNA_P-littoralis_Contig1544.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=426bp
MTKKIQIDNIKSNIEPFISNKTIIFNTLERAKLMLNETSPRSAQYFLEKE
LEHKLTTNPLSYLAQINNNKIKESKAHLNDLAKKILEKSRLPQELKTFMT
SELLTAISLTILTKLFHKTKKSDSRISQTALIRAISDHFIRQLSLQREKQ
RYKEKKDDKKSNEKETKLKESSKKKEEQKILKTDTAARTLAAKIVDVLSH
PEVNVCKIYRETPSVTRPSKIRTTNYLCLSDKWAGVAKQFENTFTSLPML
CPPLTWELQETNPYNKIESIIQGINLKGGGYLTDSEIQKNKTALLKNATA
MYVVCHSEESKDNLNYIQSLAFRINNDLLKIIKENKLLIPNYKENYRITR
QTREEYCGSIYQSKKAEIHDSATNYIAETDFAIDIADKLQGLDLHFAVRH
DGRGRIYTIAYPISPKKNIIPILER*
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mRNA from alignment at P-littoralis_Contig1544:8003..9972-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1544.6.1 ID=mRNA_P-littoralis_Contig1544.6.1|Name=mRNA_P-littoralis_Contig1544.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1970bp|location=Sequence derived from alignment at P-littoralis_Contig1544:8003..9972- (Pylaiella littoralis U1_48)
ATGACCAAAAAGATTCAAATAGATAATATAAAATCAAATATTGAACCATT
TATATCAAACAAAACCATTATTTTCAACACTCTAGAAAGAGCTAAGCTAA
TGTTAAACGAGACTTCTCCAAGGTCAGCACAGTACTTTCTAGAAAAAGAA
TTAGAGCACAAACTTACTACAAACCCTTTGTCTTATTTGGCACAAATAAA
CAACAACAAAATAAAAGAATCAAAAGCACATTTAAATGATCTTGCGAAAA
AGATTCTAGAAAAATCAAGATTGCCCCAAGAATTAAAAACATTTATGACT
TCCGAATTATTAACCGCGATTAGCTTGACGATATTAACTAAACTATTCCA
CAAAACCAAAAAGAGTGATTCCAGAATTTCTCAAACGGCATTGATTAGGG
CGATATCAGACCATTTCATAAGACAGCTATCCCTCCAAAGAGAAAAACAA
CGTTACAAGGAAAAAAAGGATGACAAAAAAAGCAATGAAAAGGAAACAAA
GTTAAAAGAATCATCAAAAAAGAAGGAAGAACAAAAAATCTTAAAAACCG
ACACAGCAGCTCGTACTTTAGCGGCTAAAATAGTAGATGTATTGTCCCAC
CCAGAGGTTAATGTATGTAAGATTTACCGCGAGACCCCATCTGTAACAAG
ACCAAGTAAAATTCGAACAACTAATTACCTTTGCTTGTCTGATAAATGGG
CGGGGGTGGCCAAGCAATTTGAAAACACTTTTACTTCCCTGCCCATGCTA
TGCCCACCTTTAACTTGGGAACTACAAGAAACAAACCCATACAACAAAAT
AGAATCAATAATACAAGGTATTAATTTAAAGGGTGGTGGATACTTAACAG
ACAGCGAGATACAAAAGAATAAAACCGCATTACTAAAAAATGCAACCGCC
ATGTACGTGGTTTGTCATTCCGAAGAATCAAAAGATAACTTAAATTATAT
CCAAAGCCTTGCTTTCCGCATTAATAATGATCTTTTAAAAATAATCAAAG
AAAACAAATTACTGATACCAAACTACAAAGAGAATTACAGGATAACACGA
CAAACAAGAGAAGAATATTGCGGCTCTATTTATCAATCTAAAAAAGCAGA
AATACATGATTCTGCTACTAATTACATCGCTGAAACAGACTTTGCCATTG
ATATAGCGGATAAGTTACAAGGATTGGATCTGCATTTTGCCGTAAGACAC
GACGGTCGAGGTAGGATTTATACCATTGCCTACCCGATTTCACCGAAAAA
AAACATTATACCAATACTTGAAAGATAATAAGGAATTTAAAGACAATAAA
AAAAAGGGTACTCTTTTGCTCGATATGGCTAAAGCCTATGACCAGGCAAT
TTACAAAGAATTTCCTGAATTTAAAACCTTTACTGATCAGGTAGACAAAA
TAGTCAATATCCGTACAAAATTAAACCTAGGTATTAACTTTAATATATCT
GAGATTTTTAAAACAAACCAATATTATAATATGGATAAGGCGACAACTTA
TTCTTTTCGGGATTTCGACGGCAAAAGTAAACGGGTTACAATGTATATTC
CAGAGAAAATAACCTCAAGCTACAAAAGATACGAGGCAAACCCAAACGCC
CGTAAAATAAAAAGCAACACTCCCTAATTTCATACATCACATAGATTCTC
TTTTAGCCCATTTGGTTATAAAAGAATTTAGAAAAGAACTGAAACCCCTT
TTTACCGTTCATGATGCTTTTTATGTCCGTTTAATCGATATGGCATTTTT
AAAAGAAGCCTATTTCAAAGCCTTACAACAAGTACACGACCTCGACCCAT
GGTCTAAATTTCTTGAAACAAACAAAATCAGCTTGGGGGATCTGAGAAAT
GATCATTGGGCAAAAAAAGAAAAGGATTTAGCCCAGGATTTAAATGATAT
GATCTCTGATTGGGTGTTAACGAGGGAAGCTATTGATTTTAAAAGACCTA
GATCTAACCGAATCCTTAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1544:8003..9972-

>mRNA_P-littoralis_Contig1544.6.1 ID=mRNA_P-littoralis_Contig1544.6.1|Name=mRNA_P-littoralis_Contig1544.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1278bp|location=Sequence derived from alignment at P-littoralis_Contig1544:8003..9972- (Pylaiella littoralis U1_48)
ATGACCAAAAAGATTCAAATAGATAATATAAAATCAAATATTGAACCATT
TATATCAAACAAAACCATTATTTTCAACACTCTAGAAAGAGCTAAGCTAA
TGTTAAACGAGACTTCTCCAAGGTCAGCACAGTACTTTCTAGAAAAAGAA
TTAGAGCACAAACTTACTACAAACCCTTTGTCTTATTTGGCACAAATAAA
CAACAACAAAATAAAAGAATCAAAAGCACATTTAAATGATCTTGCGAAAA
AGATTCTAGAAAAATCAAGATTGCCCCAAGAATTAAAAACATTTATGACT
TCCGAATTATTAACCGCGATTAGCTTGACGATATTAACTAAACTATTCCA
CAAAACCAAAAAGAGTGATTCCAGAATTTCTCAAACGGCATTGATTAGGG
CGATATCAGACCATTTCATAAGACAGCTATCCCTCCAAAGAGAAAAACAA
CGTTACAAGGAAAAAAAGGATGACAAAAAAAGCAATGAAAAGGAAACAAA
GTTAAAAGAATCATCAAAAAAGAAGGAAGAACAAAAAATCTTAAAAACCG
ACACAGCAGCTCGTACTTTAGCGGCTAAAATAGTAGATGTATTGTCCCAC
CCAGAGGTTAATGTATGTAAGATTTACCGCGAGACCCCATCTGTAACAAG
ACCAAGTAAAATTCGAACAACTAATTACCTTTGCTTGTCTGATAAATGGG
CGGGGGTGGCCAAGCAATTTGAAAACACTTTTACTTCCCTGCCCATGCTA
TGCCCACCTTTAACTTGGGAACTACAAGAAACAAACCCATACAACAAAAT
AGAATCAATAATACAAGGTATTAATTTAAAGGGTGGTGGATACTTAACAG
ACAGCGAGATACAAAAGAATAAAACCGCATTACTAAAAAATGCAACCGCC
ATGTACGTGGTTTGTCATTCCGAAGAATCAAAAGATAACTTAAATTATAT
CCAAAGCCTTGCTTTCCGCATTAATAATGATCTTTTAAAAATAATCAAAG
AAAACAAATTACTGATACCAAACTACAAAGAGAATTACAGGATAACACGA
CAAACAAGAGAAGAATATTGCGGCTCTATTTATCAATCTAAAAAAGCAGA
AATACATGATTCTGCTACTAATTACATCGCTGAAACAGACTTTGCCATTG
ATATAGCGGATAAGTTACAAGGATTGGATCTGCATTTTGCCGTAAGACAC
GACGGTCGAGGTAGGATTTATACCATTGCCTACCCGATTTCACCGAAAAA
AAACATTATACCAATACTTGAAAGATAA
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