prot_P-littoralis_Contig1544.6.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1544.6.1
Unique Nameprot_P-littoralis_Contig1544.6.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length426
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1544.6.1 vs. uniprot
Match: O78798_PYLLI (DNA-directed RNA polymerase n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78798_PYLLI)

HSP 1 Score: 678 bits (1750), Expect = 1.570e-237
Identity = 348/415 (83.86%), Postives = 380/415 (91.57%), Query Frame = 0 
Query:    1 MTKKIQIDNIKSNIEPFISNKTIIFNTLERAKLMLNETSPRSAQYFLEKELEHKLTTNPLSYLAQINNNKIKESKAHLNDLAKKILEKSRLPQELKTFMTSELLTAISLTILTKLFHKTKKSDSRISQTALIRAISDHFIRQLSLQREKQRYKEXXXXXXXXXXXTKLKESSKKKEEQKILKTDTAARTLAAKIVDVLSHPEVNVCKIYRETPSVTRPSKIRTTNYLCLSDKWAGVAKQFENTFTSLPMLCPPLTWELQETNPYNKIESIIQGINLKGGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSLAFRINNDLLKIIKENKLLIPNYKENYRITRQTREEYCGSIYQSKKAEIHDSATNYIAETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISP 415
            MTKKIQIDNIK NI+PFISNKT+IFNTLERAKLMLNETS +SAQYFLE+ELEHKLTTNPL YL Q+NNN+IKESKAHLND AKKILEKSRLP+ELKTFMTSELLTAISLTILTKLFHK    DSRISQTALIRAI DHF+RQLSLQR+K+ YKE           TKLK+SSKKKEEQKILKTDTAARTLAAKIV VLS+PE+++C+IY+E P    PS+IRTTNYLCLSD+W  VAKQ+ENTFT LPMLCPPLTWELQETNPYNKIESIIQGINL+GGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSL FRINNDLLKIIKENKLLIPNYKE+Y + +QTR+EYCGS++++++AE HDSATNY+AETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISP
Sbjct:    1 MTKKIQIDNIKLNIKPFISNKTMIFNTLERAKLMLNETSAKSAQYFLERELEHKLTTNPLPYLGQVNNNRIKESKAHLNDAAKKILEKSRLPEELKTFMTSELLTAISLTILTKLFHKASAQDSRISQTALIRAILDHFVRQLSLQRDKEIYKEENDGEK-----TKLKKSSKKKEEQKILKTDTAARTLAAKIVGVLSNPEIDICRIYQENPYSKSPSRIRTTNYLCLSDEWVEVAKQYENTFTCLPMLCPPLTWELQETNPYNKIESIIQGINLRGGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSLGFRINNDLLKIIKENKLLIPNYKESYMVAQQTRKEYCGSMFKTRRAEEHDSATNYLAETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISP 410
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1544.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
O78798_PYLLI1.570e-23783.86DNA-directed RNA polymerase n=1 Tax=Pylaiella litt... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 142..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..172
IPR037159DNA-directed RNA polymerase, N-terminal domain superfamilyGENE3D1.10.1320.10coord: 9..318
e-value: 1.7E-7
score: 32.7
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 36..413

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1544contigP-littoralis_Contig1544:8695..9972 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1544.6.1mRNA_P-littoralis_Contig1544.6.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1544 8003..9972 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1544.6.1 ID=prot_P-littoralis_Contig1544.6.1|Name=mRNA_P-littoralis_Contig1544.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=426bp
MTKKIQIDNIKSNIEPFISNKTIIFNTLERAKLMLNETSPRSAQYFLEKE
LEHKLTTNPLSYLAQINNNKIKESKAHLNDLAKKILEKSRLPQELKTFMT
SELLTAISLTILTKLFHKTKKSDSRISQTALIRAISDHFIRQLSLQREKQ
RYKEKKDDKKSNEKETKLKESSKKKEEQKILKTDTAARTLAAKIVDVLSH
PEVNVCKIYRETPSVTRPSKIRTTNYLCLSDKWAGVAKQFENTFTSLPML
CPPLTWELQETNPYNKIESIIQGINLKGGGYLTDSEIQKNKTALLKNATA
MYVVCHSEESKDNLNYIQSLAFRINNDLLKIIKENKLLIPNYKENYRITR
QTREEYCGSIYQSKKAEIHDSATNYIAETDFAIDIADKLQGLDLHFAVRH
DGRGRIYTIAYPISPKKNIIPILER*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037159RNA_POL_N_sf
IPR043502DNA/RNA_pol_sf