mRNA_P-littoralis_Contig154.104.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.104.1
Unique NamemRNA_P-littoralis_Contig154.104.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig154.104.1 vs. uniprot
Match: Q6XM26_9PHYC (FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM26_9PHYC)

HSP 1 Score: 220 bits (560), Expect = 7.290e-69
Identity = 100/215 (46.51%), Postives = 144/215 (66.98%), Query Frame = 1
Query:    1 QFGNMTTVHFGDVDLSQLRLAPARA*KSSPGFRSSYIQHKSGQRLSIQTPVMKLPWDIKPKQMDDGSNVSTQLALSFSGVNPVDEDCDLNRFMCFMKAFDARIKELVVNMNGGLDKKSEVKVHDAKFCDSVKESGSGDYPPTIQPKIWLRCRDGGSSKCVEDHNMDIAVYDIEKEMIDPENLSKGCMAAAIIEPNTAWCSSMGVGVTWVAKQAVV 645
            Q   M   HF + D+S L+L+P +  K++ G +++YI      +++IQTP+M LPWDI PK++DD SNV  +L+LSF G+N  D + +L +F  F+  FD +IK L+   +G + K SE    +A F DS+KES +G+YPPTIQ KIWL  + GGS   VED +MD+ V+D+E   I  + + KGC AAAI+EP+  WCS++GVG+TWVAKQ  +
Sbjct:    9 QHPTMAATHFSEFDVSTLKLSPPKTSKANVGCKTAYITAVGSVKIAIQTPIMTLPWDIVPKKLDDVSNVRAELSLSFVGINEDDPENELKKFKDFLSTFDQKIKTLISETHGAMGKNSEDTRLEASFRDSIKESATGNYPPTIQSKIWLNLKQGGSPSIVEDFDMDVMVFDLEGCQIQTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVAL 223          
BLAST of mRNA_P-littoralis_Contig154.104.1 vs. uniprot
Match: Q6XLU5_9PHYC (FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU5_9PHYC)

HSP 1 Score: 210 bits (535), Expect = 2.870e-65
Identity = 96/206 (46.60%), Postives = 140/206 (67.96%), Query Frame = 1
Query:   28 FGDVDLSQLRLAPARA*KSSPGFRSSYIQHKSGQRLSIQTPVMKLPWDIKPKQMDDGSNVSTQLALSFSGVNPVDEDCDLNRFMCFMKAFDARIKELVVNMNGGLDKKSEVKVHDAKFCDSVKESGSGDYPPTIQPKIWLRCRDGGSSKCVEDHNMDIAVYDIEKEMIDPENLSKGCMAAAIIEPNTAWCSSMGVGVTWVAKQAVV 645
            F D D+S ++L+P +  K++ G +++Y+      +++IQTPVM LPWDI PK+MDD SNV  +L+LSF G++  D D +L +F  F++ FD R+K L+   NG + K SE       F  ++KES +G+YPPTIQ KIWL  + GGS   VED +MD+ V+D++   I+ + + KGC AAAI+EP+  WCS++GVG+TWVAKQ  V
Sbjct:    7 FYDFDISTVKLSPPKTSKANSGCKTAYLTTTGSMKIAIQTPVMTLPWDIVPKKMDDVSNVRGELSLSFVGMDERDADNELCQFKTFVEHFDERVKALISETNGAMGKNSEETRLGTNFRPTIKESATGNYPPTIQSKIWLNLKQGGSPSSVEDFDMDVMVFDMDGSRINTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVAV 212          
BLAST of mRNA_P-littoralis_Contig154.104.1 vs. uniprot
Match: B5LWA7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA7_9PHYC)

HSP 1 Score: 209 bits (531), Expect = 1.230e-64
Identity = 96/206 (46.60%), Postives = 135/206 (65.53%), Query Frame = 1
Query:   28 FGDVDLSQLRLAPARA*KSSPGFRSSYIQHKSGQRLSIQTPVMKLPWDIKPKQMDDGSNVSTQLALSFSGVNPVDEDCDLNRFMCFMKAFDARIKELVVNMNGGLDKKSEVKVHDAKFCDSVKESGSGDYPPTIQPKIWLRCRDGGSSKCVEDHNMDIAVYDIEKEMIDPENLSKGCMAAAIIEPNTAWCSSMGVGVTWVAKQAVV 645
            + D D+S L+L+ A+  K++ G +++YI       ++IQTP+M LPWDI PK++DD SNV  +LALSF  +N  D D ++ +F  F+  FD +IK LV  M G L K SE    DA F  S+K+S SG+YPPT Q KIWL  + GG+  CV+D  MD+ V+D+    + P  + KGC AAAII P+  WCS++G+G+TWVAKQ  +
Sbjct:    5 YADFDISTLKLSQAKTSKANSGCKTAYISAIGCANIAIQTPLMTLPWDIVPKKLDDTSNVRAELALSFMNINEYDPDNEILKFRNFLTDFDIKIKTLVAEMKGVLGKNSEDARLDASFRSSIKDSTSGEYPPTFQSKIWLSLKQGGAPSCVDDFEMDVMVFDMNGAQLSPTEMRKGCPAAAIIVPSYVWCSALGLGITWVAKQVAI 210          
BLAST of mRNA_P-littoralis_Contig154.104.1 vs. uniprot
Match: A0A2P6MVC7_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MVC7_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 1.320e-7
Identity = 47/174 (27.01%), Postives = 84/174 (48.28%), Query Frame = 1
Query:  130 RLSIQTPVMKLPWDIKPKQMDDGSNVSTQLALSFSGVNPVDEDCDLNRFMCFMKAFDARIKELVVNMNGGL-----DKKSEVKVHDAKFCDSVKESGSGDYPPTIQPKIWLRCRDGGSSKCVEDHNMDIAVYDIEKEMIDPENLSKGCMAAAIIEPNTAWCSSMGVGVTWVAKQ 636
            RL IQTP++++P+DI      +G  ++  LAL   G N      ++ +F+  ++  D ++K+ +VN +  L      KK++ K+  +K+   +KES   +Y P  +  I +   DG  +           VY   +     EN++KG    AI+EP + +     VG++W   Q
Sbjct:  123 RLRIQTPILRVPFDIGTNPESEGRKMNLALALDDIGSNE-----EVAKFLNVVQQIDQKVKDHLVNNSQSLLMTPDPKKAQDKL--SKYFSCIKESQ--EYSPLFKAAIPIY--DGEPAT---------RVYLDSEVQGSVENVTKGSRVVAIVEPKSIYMIGPNVGLSWRVSQ 276          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q6XM26_9PHYC7.290e-6946.51FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a... [more]
Q6XLU5_9PHYC2.870e-6546.60FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a ... [more]
B5LWA7_9PHYC1.230e-6446.60Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A2P6MVC7_9EUKA1.320e-727.01Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:382149..382796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size648
Hectar predicted targeting categoryother localisation
Exons1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789738.7922869-CDS-P-littoralis_Contig154:382148..3826431680789738.7922869-CDS-P-littoralis_Contig154:382148..382643Pylaiella littoralis U1_48CDSP-littoralis_Contig154 382149..382643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789738.8232706-UTR-P-littoralis_Contig154:382643..3827961680789738.8232706-UTR-P-littoralis_Contig154:382643..382796Pylaiella littoralis U1_48UTRP-littoralis_Contig154 382644..382796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.104.1prot_P-littoralis_Contig154.104.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 382149..382643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.104.1

>prot_P-littoralis_Contig154.104.1 ID=prot_P-littoralis_Contig154.104.1|Name=mRNA_P-littoralis_Contig154.104.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
MKLPWDIKPKQMDDGSNVSTQLALSFSGVNPVDEDCDLNRFMCFMKAFDA
RIKELVVNMNGGLDKKSEVKVHDAKFCDSVKESGSGDYPPTIQPKIWLRC
RDGGSSKCVEDHNMDIAVYDIEKEMIDPENLSKGCMAAAIIEPNTAWCSS
MGVGVTWVAKQAVV*
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mRNA from alignment at P-littoralis_Contig154:382149..382796-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.104.1 ID=mRNA_P-littoralis_Contig154.104.1|Name=mRNA_P-littoralis_Contig154.104.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig154:382149..382796- (Pylaiella littoralis U1_48)
CAATTTGGAAACATGACTACCGTACACTTTGGAGATGTCGACCTTTCGCA GCTGAGGCTTGCCCCCGCCCGTGCCTAAAAAAGCTCGCCAGGCTTCAGAA GTTCGTACATCCAGCACAAGTCCGGTCAGAGGCTGAGCATCCAGACGCCG GTCATGAAGCTCCCTTGGGACATCAAACCTAAGCAGATGGACGACGGTTC GAACGTATCTACGCAACTAGCGCTCTCTTTCTCTGGGGTTAACCCTGTGG ACGAGGACTGCGACCTCAACAGGTTTATGTGCTTCATGAAGGCTTTCGAC GCCCGCATTAAAGAGCTGGTAGTGAACATGAACGGCGGATTGGACAAGAA GTCAGAGGTGAAGGTACACGATGCCAAGTTTTGCGACTCAGTTAAGGAGT CGGGTAGCGGGGACTACCCGCCCACCATTCAGCCCAAGATTTGGCTGCGA TGCCGAGACGGGGGGTCTAGCAAGTGCGTCGAAGATCACAATATGGACAT CGCGGTTTACGACATAGAGAAGGAGATGATCGACCCAGAAAACCTATCCA AGGGTTGCATGGCCGCGGCCATTATCGAGCCCAACACTGCGTGGTGCTCG TCTATGGGTGTAGGAGTTACATGGGTGGCAAAGCAGGCTGTTGTTTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig154:382149..382796-

>mRNA_P-littoralis_Contig154.104.1 ID=mRNA_P-littoralis_Contig154.104.1|Name=mRNA_P-littoralis_Contig154.104.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig154:382149..382796- (Pylaiella littoralis U1_48)
ATGAAGCTCCCTTGGGACATCAAACCTAAGCAGATGGACGACGGTTCGAA
CGTATCTACGCAACTAGCGCTCTCTTTCTCTGGGGTTAACCCTGTGGACG
AGGACTGCGACCTCAACAGGTTTATGTGCTTCATGAAGGCTTTCGACGCC
CGCATTAAAGAGCTGGTAGTGAACATGAACGGCGGATTGGACAAGAAGTC
AGAGGTGAAGGTACACGATGCCAAGTTTTGCGACTCAGTTAAGGAGTCGG
GTAGCGGGGACTACCCGCCCACCATTCAGCCCAAGATTTGGCTGCGATGC
CGAGACGGGGGGTCTAGCAAGTGCGTCGAAGATCACAATATGGACATCGC
GGTTTACGACATAGAGAAGGAGATGATCGACCCAGAAAACCTATCCAAGG
GTTGCATGGCCGCGGCCATTATCGAGCCCAACACTGCGTGGTGCTCGTCT
ATGGGTGTAGGAGTTACATGGGTGGCAAAGCAGGCTGTTGTTTAG
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