mRNA_P-littoralis_Contig1.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.77.1
Unique NamemRNA_P-littoralis_Contig1.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.020e-56
Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDFVMNLQ 864
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQIAHNPIT SNSKH D RHHFIRELVERKEISITHVTSE+Q+ADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:   19 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119
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BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.740e-51
Identity = 89/101 (88.12%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDFVMNLQ 864
            DVLKEVLFLRQVWRFMLP ASMPCIPVFEDNQGAIQI HNPIT SNSKH D RHHFIRELVERKEISITHV +++Q+ADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  276 DVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376
[Close]
BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 9.270e-51
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDFVMNLQ 864
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQIAHNPIT SNSKH D RHHFIRELVERKEISIT+V + +Q+ADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  221 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNLQ 321
[Close]
BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 9.600e-51
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDFVMNL 861
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDN   IQIAHNPIT SNSKH D RHHFIRELVERKEISITHVTSE+Q+ D LTKAIS+ESF LHRDFVMNL
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
[Close]
BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.890e-50
Identity = 87/98 (88.78%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDFVM 855
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQIAHNPIT SNSKH D RHHFIRELVERKEISITHVTSE+Q+ADFLTKA S+ESF LHRDFV+
Sbjct:  211 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESFALHRDFVI 308
[Close]
BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 3.000e-50
Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDFVMNLQ 864
            DVLKEVLFLRQVWRFM P ASMPCIPVFEDNQGAIQIAHNPIT SNSKH D RHHFIRELVERKEISITHVTSE+Q+ADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  679 DVLKEVLFLRQVWRFMWPDASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 779
[Close]
BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 5.820e-50
Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDFVMNLQ 864
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQIAHNPIT SNSKH D RHHFIRELVERKEISITHVTSE+Q+ADFLTKAIS+ESF LHRDFVMNLQ
Sbjct: 1372 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472
[Close]
BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.100e-49
Identity = 88/101 (87.13%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDFVMNLQ 864
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQIAHNPIT SNSKH D RHHFIRELVERKEISITHV + +Q+ADFLTKAIS+ES  LHRDFVMNLQ
Sbjct:  338 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNLQ 438
[Close]
BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 6.270e-49
Identity = 86/96 (89.58%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDF 849
            DVLKEVLFLRQVWRFMLP   MPCIPVFEDNQGAIQIAHNPIT SNSKH D RHHFIRELVERKEISITHVTSE+Q+ADFLTKAIS+ESF LHRDF
Sbjct:  313 DVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDF 408
[Close]
BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.040e-48
Identity = 89/101 (88.12%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:  562 DVLKEVLFLRQVWRFMLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKEISITHVTSEYQNADFLTKAISRESFELHRDFVMNLQ 864
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQIA+NPIT SNSKH D RHHFIRELVERKEISITHVTSE+Q+ADFLTKAIS+ESF LHRDFVMN++
Sbjct:  728 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNMR 828
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE1.020e-5691.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE1.740e-5188.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE9.270e-5187.13Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE9.600e-5186.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE1.890e-5088.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE3.000e-5091.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHY5_9PHAE5.820e-5091.09Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JEF2_9PHAE1.100e-4987.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3H4_9PHAE6.270e-4989.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQN5_9PHAE1.040e-4888.12Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:479924..480797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010506885.1
PFAMsPhyH
Model size874
Max annot lvl35493|Streptophyta
KEGG koko:K00477
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
Exons1
Evalue1.01e-13
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
Cds size261
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789312.2558887-UTR-P-littoralis_Contig1:479923..4805291680789312.2558887-UTR-P-littoralis_Contig1:479923..480529Pylaiella littoralis U1_48UTRP-littoralis_Contig1 479924..480529 +
1680789312.2777965-UTR-P-littoralis_Contig1:480790..4807971680789312.2777965-UTR-P-littoralis_Contig1:480790..480797Pylaiella littoralis U1_48UTRP-littoralis_Contig1 480791..480797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789312.2673182-CDS-P-littoralis_Contig1:480529..4807901680789312.2673182-CDS-P-littoralis_Contig1:480529..480790Pylaiella littoralis U1_48CDSP-littoralis_Contig1 480530..480790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.77.1prot_P-littoralis_Contig1.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 480530..480790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.77.1

>prot_P-littoralis_Contig1.77.1 ID=prot_P-littoralis_Contig1.77.1|Name=mRNA_P-littoralis_Contig1.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MLPTASMPCIPVFEDNQGAIQIAHNPITISNSKHTDARHHFIRELVERKE
ISITHVTSEYQNADFLTKAISRESFELHRDFVMNLQ*
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mRNA from alignment at P-littoralis_Contig1:479924..480797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.77.1 ID=mRNA_P-littoralis_Contig1.77.1|Name=mRNA_P-littoralis_Contig1.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=874bp|location=Sequence derived from alignment at P-littoralis_Contig1:479924..480797+ (Pylaiella littoralis U1_48)
CACCGTCATATTACAAATTATTTTGCCAGTATTGGTCCGGAAGGGCTTGA
TGGACCTTTCGTACTTTTTCATCGTCCCGTCTTCCAGCGTTGCGTCTTTG
CCCGAACTTTTGTGATAATGTTGCGTTGGATAACTTCTTTTCCTTTGAGG
GACTGCTTTTTTTTTTTTGGAATCAAATGTAAAGCAACTGCTGATCAACT
GCTCCGAAAAATCCTGGGGGGGTTGATGTTGGTCTTGACATGATTCCTCT
CATAGCTAGTCACAGCAGTTGGTACAGGGAATAATTTGTTTGCAAATGAG
GCATCTGACCGCGTTTTCACTGCTGCAATAATCAAATGTGATCATAATAA
CATGATGACGGGAAGTCTATGAAAATCTCCGTTTTGTTTACTTTGTTTTC
AGTTTGTTTGTTCCGTGCGGCGTGTGATGGTGCTTCGTGCACCACTGATA
TTTTTGTGTTGGATTCTGTTCTTCTCATACAGCAATAGTCGGTAAACAAC
CGGTCGGAGAACTGATGGTTGGTGAGTTTTCTTATCATAGTGCCGTTTGT
ATTGTTCGATTGATGTCTTGAAGGAAGTGTTGTTTTTGAGGCAGGTCTGG
CGTTTTATGTTGCCAACAGCGAGCATGCCTTGCATCCCAGTGTTCGAGGA
CAACCAGGGTGCGATTCAGATCGCCCACAATCCAATCACCATCTCGAACT
CGAAGCACACAGACGCACGGCATCACTTTATCAGGGAACTGGTAGAGAGG
AAGGAGATTTCGATCACACACGTGACGTCGGAATATCAGAATGCAGATTT
CTTGACGAAAGCAATCAGCAGGGAGTCTTTTGAACTGCACCGTGATTTTG
TGATGAATTTGCAGTGAAGCATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:479924..480797+

>mRNA_P-littoralis_Contig1.77.1 ID=mRNA_P-littoralis_Contig1.77.1|Name=mRNA_P-littoralis_Contig1.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1:479924..480797+ (Pylaiella littoralis U1_48)
ATGTTGCCAACAGCGAGCATGCCTTGCATCCCAGTGTTCGAGGACAACCA
GGGTGCGATTCAGATCGCCCACAATCCAATCACCATCTCGAACTCGAAGC
ACACAGACGCACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAG
ATTTCGATCACACACGTGACGTCGGAATATCAGAATGCAGATTTCTTGAC
GAAAGCAATCAGCAGGGAGTCTTTTGAACTGCACCGTGATTTTGTGATGA
ATTTGCAGTGA
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