mRNA_P-littoralis_Contig153.37.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE) HSP 1 Score: 196 bits (498), Expect = 3.450e-53 Identity = 120/284 (42.25%), Postives = 155/284 (54.58%), Query Frame = 1
Query: 4 AWYYRFLKRHRFSIRRKTRVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 687
+WY RF KR++FSIRR+T VGQK P+G EG AWA + KLR +L E A E +F L NMDQTP+Q E P +TT+E TG K A I TGG+ EK R+T+ LAV DG+KV RII+KG PFV + G P GG+S GVQ+ SWCD + W+ + RP GS R QR +LVLDDF+CH+++ F L A T+V+ + GGL P+ QPLDR +NK+ KR +R YT+
Sbjct: 187 SWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.170e-44 Identity = 97/224 (43.30%), Postives = 134/224 (59.82%), Query Frame = 1
Query: 154 IFALLYNMDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
+F L NMDQTP+Q E P +TT+EKTG K A I+TGG+ EK R+T+VLAV DG+KV PRII+KG PF+ +PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH++E + L A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 113 VFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERG 334
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE) HSP 1 Score: 165 bits (417), Expect = 2.260e-44 Identity = 97/236 (41.10%), Postives = 135/236 (57.20%), Query Frame = 1
Query: 112 QKLRSSLREHAQEAIFALLYNMDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYGRSGQKVTAPSRG 744
+ L S + +F L NMDQTP+Q E P +TT+EKTG K A ++TGGE EK R+T+VLAV DG+KV RII+ G PF+ T + G+PA G+S GVQ+ SW D + + W + + RP + S QRP +LVLDDF+CH++E F L A T+V+ + GGLTP+ QPLDR +NK+ KR +R++YT++ K+ P RG
Sbjct: 33 EDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGE-EKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASATDARSGKLKPPERG 267
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI) HSP 1 Score: 160 bits (404), Expect = 2.750e-44 Identity = 91/218 (41.74%), Postives = 124/218 (56.88%), Query Frame = 1
Query: 112 QKLRSSLREHAQEAIFALLYNMDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG------------------------GTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 690
+ L S E +F L NMDQTP+Q E P +T++EKTG K A I TGG+ EK R+T+ LAV GD +KV R I+KG P + + GYP GG+S GVQ+ SWCD + W+ + RP + S QRP +LVLDDF+CH+++ F +L A T+V+ + GGLTP+ QPLDR +NK KR +R YT++
Sbjct: 37 EDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGK-EKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 165 bits (417), Expect = 4.160e-44 Identity = 101/238 (42.44%), Postives = 138/238 (57.98%), Query Frame = 1
Query: 112 QKLRSSLREHAQEAIFALLYNMDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
+ L S + +F L NMDQTP+Q E P +TT+EKTG K A I+TGG+ EK R+T+VLAV DG+KV PRII+KG PF T + G+PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH++E F L A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 99 EDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERG 334
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE) HSP 1 Score: 165 bits (418), Expect = 6.260e-44 Identity = 106/275 (38.55%), Postives = 142/275 (51.64%), Query Frame = 1
Query: 40 SIRRKTRVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQK-VRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIR 696
SIRR+T VGQK P+G+EG AWA + KLR +L + A E +F L NMDQTP+Q E P +TT+EKTG K A I+TGG + G QK V PRII++G PF+ T + G+PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH++E F L A T+V+ GGLTP+ QPLDR +NK+ KR +R S +R
Sbjct: 108 SIRRRTSVGQKLPQGYEGMAWATVMKLREALVKRAGEIYARRHPPVPDKSPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGGQREGTLHARSGCHGGRQKNVSPRIIFQGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFTPGGLTPLLQPLDRTLNKQMKRLLRGNVGSSLR 382
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 166 bits (421), Expect = 1.920e-43 Identity = 98/238 (41.18%), Postives = 137/238 (57.56%), Query Frame = 1
Query: 112 QKLRSSLREHAQEAIFALLYNMDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
+ L S + +F + NMDQ P+Q E P +TT++KTG K A I+TGG EK R+T+VLAV DG+KV PRII++G PF+ T + G+PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH +E F L A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 293 EDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERG 529
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE) HSP 1 Score: 158 bits (400), Expect = 6.710e-41 Identity = 104/276 (37.68%), Postives = 136/276 (49.28%), Query Frame = 1
Query: 4 AWYYRFLKRHRFSIRRKTRVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKR 663
+WY RF KR++F+IRR+T VGQK P+G EG AWA + KLR +L E A E +F L NMDQTP+Q E+ G EK R+T+ LAV DG+KV RII+KG PFV + G P G+S GVQ+ SWCD + W+ + RP GS R QR +LVLDDF+CH+++ F L A T+V+ + GGLTP+ Q LDR +NK+ KR
Sbjct: 174 SWYQRFRKRNKFNIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHERD-----------------AGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVEGMSFGVQEKSWCDLRECKLWIKGSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQLLDRMLNKQMKR 431
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.330e-39 Identity = 91/217 (41.94%), Postives = 126/217 (58.06%), Query Frame = 1
Query: 175 MDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
MDQTP+Q E P +TT+EKTG K A I+TGG+ E+ R+ +VLAV DG+KV PRI +KG PF T + G+PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+ H++E F L A T+V+ + GGLTP+ QPLD +NK+ KR +R +Y ++ RSG K+ P RG
Sbjct: 1 MDQTPVQHEMPVETTLEKTGAKDARISTGGK-EQERFALVLAVMADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPNNGSIVQQRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMKRLLRGKYIAYSASAVADARSG-KLKPPERG 215
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 156 bits (395), Expect = 2.030e-39 Identity = 92/205 (44.88%), Postives = 116/205 (56.59%), Query Frame = 1
Query: 136 EHAQEAIFALLYNMDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVR 672
E +F L NMDQTP+Q E P +TT+EK G K A I+TGG+ EK R+T LAV DG KV RII+KG PF+ FGYP G+ VQ+ SWCD + W+++ + RP GS + QR S+LVLDDFRCHR E F K L T V+++ GGLTP+ QPLDR +NKE KR +R
Sbjct: 176 ESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMR 378 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.37.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig153.37.2 >prot_P-littoralis_Contig153.37.2 ID=prot_P-littoralis_Contig153.37.2|Name=mRNA_P-littoralis_Contig153.37.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp MDQTPIQAEKPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVback to top mRNA from alignment at P-littoralis_Contig153:114917..116459+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig153.37.2 ID=mRNA_P-littoralis_Contig153.37.2|Name=mRNA_P-littoralis_Contig153.37.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1543bp|location=Sequence derived from alignment at P-littoralis_Contig153:114917..116459+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig153:114917..116459+ >mRNA_P-littoralis_Contig153.37.2 ID=mRNA_P-littoralis_Contig153.37.2|Name=mRNA_P-littoralis_Contig153.37.2|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig153:114917..116459+ (Pylaiella littoralis U1_48)back to top |