mRNA_P-littoralis_Contig152.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig152.10.1
Unique NamemRNA_P-littoralis_Contig152.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig152.10.1 vs. uniprot
Match: D8LRH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH5_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.240e-44
Identity = 139/274 (50.73%), Postives = 164/274 (59.85%), Query Frame = 2 
Query:  407 EKQLARKQEDFEKMREISAHMDNIVQRLATFFPPDGNKERRGGTHVPPPPAVPEITPLPLQPTGQGKDRTVTARVTTMDXXXXXXXXXXXXXXSVASGLHFDDDLSGSTVSSSRF-EDRQHEENR-RGGRGHGMTSREQS---------GIDADRGVGQRS-------ARERRVGTRNNHQAGKEANAEVLPENEKSANSIDKRLEAEWAPGMGRRRSRVSLGKPGANIATEASRERLLWDELRESVEGVAGSAEVPAPSMWGRVGPVGKNKEE 1174
            E++LARK+EDFEKM+E+S HMDN+VQRLAT+FP DG  E    T V PP A PE+ PLPL      +DR V+ARV TM XXXXXXXXXXXXX SVASGLHFDD+LSGST S  R  ED QH E R  GGRG   TSR QS         G+D D   G R        A E R GT ++               ++SA+ +DK L  +     G  RSR   G+ GAN+  E S ERLLWDELRE++EGVAGS  VP    WG    V K + +
Sbjct:   86 ERRLARKREDFEKMKELSTHMDNVVQRLATYFPLDGT-EGEPKTDVVPPSAAPELPPLPLPSPDNARDRYVSARVLTMXXXXXXXXXXXXXXTSVASGLHFDDELSGSTASYGRHGEDEQHAERRGAGGRGQRGTSRRQSQSRADSDRRGMDTDEPAGSRKHEAEGPDAAEHRKGTTSS-----------WSRKDRSASVVDKGLGLKLESSGGEMRSRPPPGRAGANLGFEDSHERLLWDELRETLEGVAGSDAVPP--AWGHGAAVEKARAD 345
[Close]
BLAST of mRNA_P-littoralis_Contig152.10.1 vs. uniprot
Match: A0A6H5KZ75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ75_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 7.520e-42
Identity = 134/275 (48.73%), Postives = 159/275 (57.82%), Query Frame = 2 
Query:  416 LARKQEDFEKMREISAHMDNIVQRLATFFPPDGNKERRGGTHVPPPPAVPEITPLPLQPTGQGKDRTVTARVTTMDXXXXXXXXXXXXXXSVASGLHFDDDLSGSTVSSSRFEDRQHEENRRG--GRGHGMTSREQS-------GIDADRGVGQRSARERRVGTRNNHQAGKEANAEVLPENEKSANSIDKRLEAEWAPGMGRRRSRVSLGKPGANIATEASR----------ERLLWDELRESVEGVAGSAEVPAPSMWGRVGPVGKNKEEVVR 1183
            LARK+EDFEKM+E+SAHMDN+VQRLAT+FPPD + E    T V PP A PE+ PLPL P    + R V+ARV TMD  XXXXXXXXXXXXSVASGLHFDD+LS ST S+SR  + +    RRG  GRG   TSR QS       G+D D  VG R        T  +    ++         + SA+ + K L  +     G RRSR   G+ GAN+  E S           ERLLWDELRES+EGVAGS  VP    WG      K + E  R
Sbjct:   89 LARKREDFEKMKELSAHMDNVVQRLATYFPPD-DTEGEPNTDVVPPSAAPELPPLPLPPPDNARGRYVSARVLTMDRAXXXXXXXXXXXXSVASGLHFDDELSASTASNSRHGEDEQRAKRRGSGGRGQRGTSRRQSRADSNRRGMDTDEPVGSRKHEAEGPDTAEH----RKRTTSNWSRKDTSASVVGKGLGLKLESSGGGRRSRSPPGRAGANLGFEDSHXXXXXXXXXXERLLWDELRESLEGVAGSDAVPP--AWGHGAAAEKARAERAR 356
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRH5_ECTSI1.240e-4450.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ75_9PHAE7.520e-4248.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig152contigP-littoralis_Contig152:35324..38892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1625
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004540.1
Cds size1185
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig152.10.1prot_P-littoralis_Contig152.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig152 35442..38570 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789725.876333-UTR-P-littoralis_Contig152:35323..354411680789725.876333-UTR-P-littoralis_Contig152:35323..35441Pylaiella littoralis U1_48UTRP-littoralis_Contig152 35324..35441 +
1680789725.9352093-UTR-P-littoralis_Contig152:38570..388921680789725.9352093-UTR-P-littoralis_Contig152:38570..38892Pylaiella littoralis U1_48UTRP-littoralis_Contig152 38571..38892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789725.886127-CDS-P-littoralis_Contig152:35441..354711680789725.886127-CDS-P-littoralis_Contig152:35441..35471Pylaiella littoralis U1_48CDSP-littoralis_Contig152 35442..35471 +
1680789725.8997796-CDS-P-littoralis_Contig152:35922..361801680789725.8997796-CDS-P-littoralis_Contig152:35922..36180Pylaiella littoralis U1_48CDSP-littoralis_Contig152 35923..36180 +
1680789725.9110975-CDS-P-littoralis_Contig152:37243..375621680789725.9110975-CDS-P-littoralis_Contig152:37243..37562Pylaiella littoralis U1_48CDSP-littoralis_Contig152 37244..37562 +
1680789725.9250033-CDS-P-littoralis_Contig152:37992..385701680789725.9250033-CDS-P-littoralis_Contig152:37992..38570Pylaiella littoralis U1_48CDSP-littoralis_Contig152 37993..38570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig152.10.1

>prot_P-littoralis_Contig152.10.1 ID=prot_P-littoralis_Contig152.10.1|Name=mRNA_P-littoralis_Contig152.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=395bp
MSGSQSSSFEDQSSGASSSDEVDEEESGSGSYSGSGSSSDGESGSGSESG
SSDGSDSGTGSGDDSGKSSSSGSGTYDSGDSQDEEEDGGQTEEEDKEKQL
ARKQEDFEKMREISAHMDNIVQRLATFFPPDGNKERRGGTHVPPPPAVPE
ITPLPLQPTGQGKDRTVTARVTTMDRAVSARRLMTDRAVSVASGLHFDDD
LSGSTVSSSRFEDRQHEENRRGGRGHGMTSREQSGIDADRGVGQRSARER
RVGTRNNHQAGKEANAEVLPENEKSANSIDKRLEAEWAPGMGRRRSRVSL
GKPGANIATEASRERLLWDELRESVEGVAGSAEVPAPSMWGRVGPVGKNK
EEVVREERRRRLIDEAIAVLLEGSSSGSSDDERLKDDDAYSKGA*
back to top

mRNA from alignment at P-littoralis_Contig152:35324..38892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig152.10.1 ID=mRNA_P-littoralis_Contig152.10.1|Name=mRNA_P-littoralis_Contig152.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3569bp|location=Sequence derived from alignment at P-littoralis_Contig152:35324..38892+ (Pylaiella littoralis U1_48)
GTGCACCACCACTACAGCTACTCCCAAACGCTCAGTTGATCCACCGCTGT
GGTACTCTAGTGCGTGGCTTCTTTAGCACGCGTGAAATTTTGCGGCTGGA
TCGAACCGTAGCGGAAGAATGTCGGGATCACAGAGCTCAAGTTTTGAGGT
GAGGCTTGGTTCTGTGCTTGAACACAAACAAGATTTCACCTGTTTGTTGA
AGATTTTCAGCTAGAAGCGAGATCGCACCCACTGGACATATCTGGGATGT
CCATGCTGGCGATCACGACCGACGCACAACGTCCGCATAGAGTCAAGCCA
CAGCATCCGCCTCACATGGAGAACCACCCTGGGCACCGTATCAGATTCGT
TTGGGTCCACACACAATGTGCAACGCACGGTGTGCGACACGCAGTATATA
CTTGTACTTCGTATTTGTTTCTGGCGGTTGAGTCTCTCGGGTACAAATTT
AGTACTCGTATATACAGCAGTATACACCTGCTGTACATGACTGGTATCGA
CCAGTGTGTGACCGAAATGTGAAAAAAAAATACACAGCAGAGAGCGTACA
GCAGTAACAGCAGTAAAGACGATCAAACACACACAACTGCCGCTCTCAGG
ATCAAAGTTCGGGAGCGAGCAGCAGCGACGAAGTGGATGAGGAGGAGTCT
GGCTCTGGCTCTTACTCTGGCTCTGGCTCTAGCTCAGACGGTGAGAGCGG
CTCCGGTAGCGAAAGCGGCTCGTCGGACGGCAGCGACAGCGGCACCGGTT
CTGGGGACGACAGTGGTAAAAGCAGTAGCAGCGGCAGCGGTACTTATGAT
TCGGGGGACAGCCAAGACGAAGAAGAAGATGGGGGCCAAACCGAGGAAGA
GGACAAGGTATGCGGCTTCTAGCTATCCCGCTGGCAGGGTTTTCGCAAAT
GCGGTGCGTAAATAGTGAAGCTCATCGCAATGGGACGCTTGAGCGACGCT
ACCACGCTACCACTGACGTTTCAGTTTGTGCGTGCATAGCTTGTATGCGA
TGTCGTCCCATCTATTGAAGACACCAGTGATCACGTTCCGGTATAAAGTG
GACGCATCAGCCGGGTCCACAGGGGTGGAAGGTCCACACACATGGATTCT
TTTTTTTCTCCACCTTTGTTGTGCGTGCTTTCCTTCATTTTTATCGCGAG
AAGGTTTCGACCATTCCTTCCGATCTATTTTTCGACTTATTGTTGTTCTT
GTTCTTGATCTTCATCTTCATCTTCATCTTGTTCGTGTTCGTGTTCTTGT
GCTTGTTTTTCGAATCGAGGTTTAGTTTCTCGCGGAACAATCACTTTTCA
TTCCTTTACGCGAAAAATTCCAGCTCGCCGGGATTCAGACTCGCGGTCTA
GGATTTGGAGGGTTTTGACGTTTCCCACTGAACCATGACCGATGCTCAAT
AAATTCAGCGACATACCTTATACATCTAAAATGGAGTACCTGGTATTGCT
CACGCCTGATGAAATTCGAGCAGTACGTGCGGCCTAGATCTAAACGGGGA
AATGAGCGAAGAGAGAACGCACATCATGTGTATCATTGTCAGATCCCGTG
GATTAAAACAAATGCAGGCACGTCATGTGTACCAAACCCGTCTGCTCGCA
CCCCCCGCTTCCTTGTTTCTCAGCTTCGTGCCGACTTGGCAAGGAGGTAG
TGGTTCCGTGCGGTGTCTAGTGCGAGGTGTGTGCTATCAGCTGAAGGTTA
CCTTTCAATGTTCTATTTCCTTCATCTTTTGTATATTTGCATATTGTCGC
CTCTGGTCTCGTGCTACTGATGACGAAAGGCTTAAGATGGAACTAGCTGT
AGACGTATCGATGAAAGGGGCTGCGCCAAAACCGCACGACTTCCCATGCT
GTAGATGATTTCCTGACCCTCGCCGTTTGGCTATTTGTTGACACTACGAA
CAACCCTATCGAAATTCCAGGAGAAGCAGCTGGCCCGTAAACAAGAAGAC
TTCGAAAAAATGAGAGAAATTTCTGCCCACATGGACAACATCGTGCAACG
TCTGGCCACCTTCTTTCCCCCGGATGGCAACAAGGAACGCAGAGGAGGCA
CCCACGTTCCTCCTCCTCCCGCTGTGCCCGAGATTACGCCTCTACCACTG
CAACCAACGGGGCAAGGAAAAGACAGAACGGTAACTGCAAGAGTCACGAC
GATGGACCGAGCAGTGTCAGCGAGACGACTCATGACCGACCGGGCCGTTT
CGGTTGCCAGCGGTCTGCACTTCGACGACGACCTTTCAGGTGCGCTCTGC
AGCAGCGCGGGGTAGACAAGCGGCGCAAGAATCGATATCGAAAGCGATGT
GCACTTTGTCTGTGTCCAAGGAATTCCCGGGCCGCTTCCGTTTGCTGTCT
TCCTTGGTGTACAGGTTGGAAACGTTAGCCCTACCCCCCCGTCTTTATCA
TCGGACCTGTTTCATGGCTGCTACCCCGCGCAATATATCGTACCTTGAAG
CACGCCCACCGCGCCCTCGAGATGTGTTCTTGGATCGGAAAAAATGTATT
TCCCTTTCATTGTTGCATCGATATTATCTCAAGCTCTCGACTGTGTGTGT
TGGATCAAGCTCGCCTCCCCGACGTCTGCAAAAGGTCGGACGTTCATTCT
AAGCTGTGCAGCGTCTCCTTTGTTACGCACTGTACGGTCTCGTCGTCGCC
TGCCATGTATTCCCTGCAGGCTCGACGGTTTCCAGTAGCAGGTTTGAAGA
CCGGCAGCACGAAGAAAACCGAAGAGGAGGAAGAGGGCACGGGATGACGA
GTAGGGAACAGAGTGGCATAGACGCGGACAGGGGAGTGGGACAAAGGAGC
GCGCGCGAACGGCGCGTGGGCACCCGAAATAACCACCAAGCAGGAAAAGA
AGCGAATGCAGAAGTCTTGCCAGAGAACGAGAAAAGTGCAAACAGCATCG
ACAAACGTCTGGAAGCGGAATGGGCTCCGGGGATGGGGAGGAGGAGGTCG
CGGGTGTCGTTAGGAAAACCAGGTGCTAACATCGCCACAGAAGCCTCGCG
TGAGCGACTATTGTGGGATGAGCTTCGTGAGTCCGTGGAAGGGGTCGCTG
GCAGTGCAGAGGTGCCGGCTCCAAGTATGTGGGGTCGTGTTGGGCCAGTA
GGGAAAAACAAAGAGGAGGTAGTTCGTGAGGAGCGGCGACGCCGGCTTAT
CGATGAAGCAATAGCTGTTTTGCTCGAGGGTAGCAGCAGCGGCAGCAGTG
ACGACGAGAGGTTGAAAGATGACGACGCGTATAGCAAAGGCGCGTAAGGC
TCGGCAACAGCTTGCTGGCACTTTTCCAAAGCATGGCTTTACTCGTCGGT
CAGTGGGTGTCGCGTGGGAGGGTTTGTGGCGCTATTAACTTGTACTGACA
GACGATGGCGGGATGGTATGGTTCAACTGTCAATATCCTGAAAAGACGAG
CAATGGGGTTTTCGGCTATGCACTGCATGCATTCTGCGAAAATCGTACAT
GTACTGTTACGCATATTGCTCAAGTCGTGTGGTAGATGGCAAGCGACCGA
CGGCACTCAACCTCTCGAAAAACGTCACAGAGGAGTTGTAGAGAGGAAAG
GTAGAAAGGTAGAAGCAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig152:35324..38892+

>mRNA_P-littoralis_Contig152.10.1 ID=mRNA_P-littoralis_Contig152.10.1|Name=mRNA_P-littoralis_Contig152.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1185bp|location=Sequence derived from alignment at P-littoralis_Contig152:35324..38892+ (Pylaiella littoralis U1_48)
ATGTCGGGATCACAGAGCTCAAGTTTTGAGGATCAAAGTTCGGGAGCGAG
CAGCAGCGACGAAGTGGATGAGGAGGAGTCTGGCTCTGGCTCTTACTCTG
GCTCTGGCTCTAGCTCAGACGGTGAGAGCGGCTCCGGTAGCGAAAGCGGC
TCGTCGGACGGCAGCGACAGCGGCACCGGTTCTGGGGACGACAGTGGTAA
AAGCAGTAGCAGCGGCAGCGGTACTTATGATTCGGGGGACAGCCAAGACG
AAGAAGAAGATGGGGGCCAAACCGAGGAAGAGGACAAGGAGAAGCAGCTG
GCCCGTAAACAAGAAGACTTCGAAAAAATGAGAGAAATTTCTGCCCACAT
GGACAACATCGTGCAACGTCTGGCCACCTTCTTTCCCCCGGATGGCAACA
AGGAACGCAGAGGAGGCACCCACGTTCCTCCTCCTCCCGCTGTGCCCGAG
ATTACGCCTCTACCACTGCAACCAACGGGGCAAGGAAAAGACAGAACGGT
AACTGCAAGAGTCACGACGATGGACCGAGCAGTGTCAGCGAGACGACTCA
TGACCGACCGGGCCGTTTCGGTTGCCAGCGGTCTGCACTTCGACGACGAC
CTTTCAGGCTCGACGGTTTCCAGTAGCAGGTTTGAAGACCGGCAGCACGA
AGAAAACCGAAGAGGAGGAAGAGGGCACGGGATGACGAGTAGGGAACAGA
GTGGCATAGACGCGGACAGGGGAGTGGGACAAAGGAGCGCGCGCGAACGG
CGCGTGGGCACCCGAAATAACCACCAAGCAGGAAAAGAAGCGAATGCAGA
AGTCTTGCCAGAGAACGAGAAAAGTGCAAACAGCATCGACAAACGTCTGG
AAGCGGAATGGGCTCCGGGGATGGGGAGGAGGAGGTCGCGGGTGTCGTTA
GGAAAACCAGGTGCTAACATCGCCACAGAAGCCTCGCGTGAGCGACTATT
GTGGGATGAGCTTCGTGAGTCCGTGGAAGGGGTCGCTGGCAGTGCAGAGG
TGCCGGCTCCAAGTATGTGGGGTCGTGTTGGGCCAGTAGGGAAAAACAAA
GAGGAGGTAGTTCGTGAGGAGCGGCGACGCCGGCTTATCGATGAAGCAAT
AGCTGTTTTGCTCGAGGGTAGCAGCAGCGGCAGCAGTGACGACGAGAGGT
TGAAAGATGACGACGCGTATAGCAAAGGCGCGTAA
back to top