mRNA_P-littoralis_Contig15.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.66.1
Unique NamemRNA_P-littoralis_Contig15.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.66.1 vs. uniprot
Match: Q8QNK3_ESV1K (EsV-1-70 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNK3_ESV1K)

HSP 1 Score: 423 bits (1088), Expect = 5.480e-142
Identity = 215/440 (48.86%), Postives = 300/440 (68.18%), Query Frame = 1
Query:    1 ESDFMGPRGDIVSTSDLVRSMAYHAAAAGYSPELEYFEKVSPTFSDIEGSPDVYRDMLRRVESYATLAGGKKVVAAKKAIRVGVSARMAEMRGRPGGPGVFAEDAADMESLFADTDHKKVICKLHRLGRYPEDNPRFYIHMVYRYYTNDAHNALADEGKVLRYPSLQKTMDVKHPVDCVGSTPPEFRMFLRESKGHPVPVASLPVPSKTRANEVVYGYDFESAVPWVPAIRAKIHNMFADLKATGSQAFRQVYPGYLLKGAGR-ESGNKTVLDALARSIEMGDLARALDGIVNNAVATR-VLDRAILVDRGITEVVCSYNRHPFRSSGEQLRERLGFFLQDSVRGVFRSAARRIPS-FCEILYTSLGIPCVTMDAFDEFCRSKNAMNYRLRDEDAWRIFIIDLQKICFIFHARSRADEVSRFMSENGSGDGYLRRVLSTL 1311
            ++DFMG  GDIVS +DLV +MA++A   GYSP   +    SPTF +    P VY+ +L++++++ATL GGKK+ + KK IRV VS +M  MR +P   GVF ++AADM +++ DTDH+ +I  LH LG+YPE +PRFYIHMVYRYY N+ H  LA+E +VLR+PS+QK +D+  P+DC+G+ P EFR F++ S+G+ V   ++PVPSKT AN+VVY ++FE +VPWVP +RA I ++F +L    +  FR++YP YL++G G  E GNK V+ ALARSIEM DL + L G  + +V T+ +LD+ + +D  + ++   YN HPF   GEQL ERLGF  QDS+RGVFR  A +  S FC  +Y+ L I   T++ F E+C +K  M ++ RDE  WR FI+D +KIC I HA SR  +   F+ E G GD YL R+L  L
Sbjct:   48 DNDFMGQSGDIVSIADLVEAMAFYATTMGYSPAA-WEPTPSPTFDNFARRPGVYKTLLKKIDNWATLNGGKKLSSVKKLIRVRVSDKMKTMREKPNALGVF-DNAADMATIYGDTDHESIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKQLANEDRVLRFPSMQKILDITKPIDCIGAIPAEFRTFVKSSRGNSVSTVTIPVPSKTNANDVVYTHNFEVSVPWVPVMRAMIFDLFVNL----NPRFREIYPKYLVRGEGGCEKGNKAVVAALARSIEMKDLVQTLQGTQSISVYTKDLLDQMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFRRIASKTSSEFCTEIYSGLRIEFKTIEVFREYCTTKTFMAFKRRDEGEWRQFIVDTRKICCILHAWSRKRDADEFVKEYGCGDRYLCRILGEL 481          
BLAST of mRNA_P-littoralis_Contig15.66.1 vs. uniprot
Match: D8LPA2_ECTSI (EsV-1-70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA2_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 2.650e-137
Identity = 213/440 (48.41%), Postives = 296/440 (67.27%), Query Frame = 1
Query:    1 ESDFMGPRGDIVSTSDLVRSMAYHAAAAGYSPELEYFEKVSPTFSDIEGSPDVYRDMLRRVESYATLAGGKKVVAAKKAIRVGVSARMAEMRGRPGGPGVFAEDAADMESLFADTDHKKVICKLHRLGRYPEDNPRFYIHMVYRYYTNDAHNALADEGKVLRYPSLQKTMDVKHPVDCVGSTPPEFRMFLRESKGHPVPVASLPVPSKTRANEVVYGYDFESAVPWVPAIRAKIHNMFADLKATGSQAFRQVYPGYLLKGAGR-ESGNKTVLDALARSIEMGDLARALDGIVNNAVATR-VLDRAILVDRGITEVVCSYNRHPFRSSGEQLRERLGFFLQDSVRGVF-RSAARRIPSFCEILYTSLGIPCVTMDAFDEFCRSKNAMNYRLRDEDAWRIFIIDLQKICFIFHARSRADEVSRFMSENGSGDGYLRRVLSTL 1311
            ++DFMG  GDIVS ++LV +MA++A   GYSP   +   +SPT  + E  P VY+ +LR+V+++ATL+G KK+++ KK IR+ VS +M ++R +P   GVF + AADM ++  +T+ K  I  LH LG+YP+ +PRFYIHMVYRYY N+ HN LA E KVLR+PS QK +D   P+DC+G+ P EFR F+R  +G+ V   + PVPSKT ANEVVY ++FE+ VPWVP +RA I+++F +L       FR++YP YL++G G  E GN   ++ALARSIEM DL + L G+ + +V T+ +LDR + VD    ++   YN HPF   GEQLRERLGF  QDSVRGVF R A++    FC  +Y+ L I   T++ F E+C +K  M ++ RDE  WR FI+D +KIC I HA SR  +V  F+ E G  D Y+ R+L+ L
Sbjct:   48 DNDFMGESGDIVSIAELVEAMAFYATTMGYSPAA-WEPTLSPTLENFERRPGVYKTLLRKVDNWATLSGSKKLLSVKKLIRIRVSDKMKKVREKPNALGVF-DHAADMATIHGNTNPKSTINSLHLLGKYPDQDPRFYIHMVYRYYMNEYHNQLATEDKVLRFPSFQKILDTTKPIDCIGAIPAEFRTFVRGIRGNSVSTVTTPVPSKTNANEVVYTHNFEATVPWVPVMRAMIYDLFVNLNTR----FREIYPKYLVRGEGGCEKGNVAAVEALARSIEMADLVQTLTGVQSVSVYTKDLLDRMLAVDSRAADIFPRYNSHPFVGEGEQLRERLGFLHQDSVRGVFQRIASKSSSDFCTDIYSGLKIEFKTIEVFKEYCTTKTFMVFKRRDECEWRQFILDTRKICCILHAWSRKKDVDEFVEEYGCEDRYMCRILAEL 481          
BLAST of mRNA_P-littoralis_Contig15.66.1 vs. uniprot
Match: B5LWD1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWD1_9PHYC)

HSP 1 Score: 109 bits (272), Expect = 1.290e-22
Identity = 99/355 (27.89%), Postives = 160/355 (45.07%), Query Frame = 1
Query:  175 RRVESYATLAGGKKVVAAKKAIRVGVSARMAEMRGRPGGPGVFAEDAA-DMESLFADTDHKKVICKLHRLGRYPEDNPRFYIHMVYRYYTNDAHNALADEGKVLRYPSLQKTMDVKHPVDCVGSTPPEFRMFLRESKGHPVPVASLPVPSKTRANEVVYGYDFESAVPWVPAIRAKIHNMFADLKATGSQAFRQVYPGYLLKGAGRESGNKTVLDALARSIEMGDLARALDGIVNNAVATRVLDRAILVDRGITEVVCSYNRHPFRSSGEQLRERLGFFLQDSVRGVFRSAARRIPSFCEILYTSLGIPCVTMDAFDEFCRSKNAMNYRLRDEDAWRIFIIDLQKICFIFHARSR 1236
            R VE   T +G KK+  A+      ++ R+ +       P +  E  A D   L   +D    I  LH  G     + R+Y+HMV+R+Y  + H+     G VL +PS Q  +D  +P       PPEFR FLR++   P     +P+P K  A EV Y  +FE     +   RA I  +        S   R VYP YL  G+   S +  +++ +A + ++ +++  +  +  +AV T  LD+ +            Y +H F  SGEQL+ER GFF ++S   +F   A +     E L+++        D F  FC  K  ++    DE + R  ++ +  + F+    +R
Sbjct:   45 RLVEENLTASGLKKLSDAR------ITLRLRQECAERSTPSLETEALARDELDLTNSSDIDTFIKVLHSWGNCVIHDSRYYLHMVFRFYLKEYHDTARKLGLVLEHPSYQFILDSIYPSTSASKFPPEFRRFLRDN---PPRSPRVPLPLKRSATEVTYAENFEDRSE-ISTARASIQRIMHKW----SSERRCVYPEYLRPGS---SKSDFIVERVAYARKVDEVSSGMKKL--SAVCTIKLDKVVSQCPISATAHEEYMKHVFVQSGEQLKERFGFFSRESYHEIF--FAVKDHGIHEKLFSATSFDVGGYDNFKAFCTRKGRLS---NDEASVRKLLMTVVDVVFLLGCYNR 375          
BLAST of mRNA_P-littoralis_Contig15.66.1 vs. uniprot
Match: Q6XM02_9PHYC (FirrV-1-B34 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM02_9PHYC)

HSP 1 Score: 96.7 bits (239), Expect = 3.960e-18
Identity = 90/333 (27.03%), Postives = 149/333 (44.74%), Query Frame = 1
Query:  181 VESYATLAGGKKVVAAKKAIRVGVSARMAEMRGRPGGPGVFAEDAADMESLFADTDHKKVICKLHRLGRYPEDNPRFYIHMVYRYYTNDAHNALADEGKVLRYPSLQKTMDVKHPVDCVGSTPPEFRMFLRESKGHPVPVASLPVPSKTRANEVVYGYDFESAVPWVPAIRAKIHNMFADLKATGSQAFRQVYPGYLLKGAGRESGNKTVLDALARSIEMGDLARALDGIVNNAVATRV-LDRAILVDRGITEVVCSY--NRHPFRSSGEQLRERL-----GFFLQDSVRGVFRSAARRIPSFCEILYTSLGIPCVTMDAFDEFCRSKNAMNY 1155
            +E   T  G KK++  K +IR+ V+  M E +     P +       +E    D D    +  L +    PED+P++Y+HMV+R+Y  D H+ L ++G+V+ YPS Q  +D+ +P D   + PPEFR F++++    +     P+P K  A +V   Y+FE A+P V   R  I  +F   K T        YP YL  G   + G   V +      ++  + + ++ +VN    T   LD  +     + EV   Y  N   F S  +Q R  +       F+     G+    AR +     +L  +  +     D F+++C  K  + Y
Sbjct:   56 LEDRLTPRGLKKLLDLKISIRLRVAQDMREKQRTEAIPAM----TQPLEFPLDDADGFTTV--LQKWATMPEDDPKYYLHMVFRFYMKDYHDFLVNKGQVIFYPSYQTILDILYPSDAAIAFPPEFRAFMKDAHSRSLETPYTPLPVKGDAKKVSLQYNFE-ALPDVATQRRYIERVFDIWKQTSFCT----YPTYLCTG---KPGCGYVENQFIYFRKIKRVKKEMEKLVNFPRETLAKLDTLVCKYPLVHEVYLDYAKNSSQFSSERKQFRRIMLQKFRKHFVMCKELGIHSDLARHVVERNSLLSAAPVLDHALQD-FEKYCTKKIRVYY 373          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNK3_ESV1K5.480e-14248.86EsV-1-70 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPA2_ECTSI2.650e-13748.41EsV-1-70 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
B5LWD1_9PHYC1.290e-2227.89Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM02_9PHYC3.960e-1827.03FirrV-1-B34 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:164933..166249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1317
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-70
Ec32 orthologEc-06_006100.1
Cds size1305
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.401222-CDS-P-littoralis_Contig15:164932..1662371680789711.401222-CDS-P-littoralis_Contig15:164932..166237Pylaiella littoralis U1_48CDSP-littoralis_Contig15 164933..166237 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.41082-UTR-P-littoralis_Contig15:166237..1662491680789711.41082-UTR-P-littoralis_Contig15:166237..166249Pylaiella littoralis U1_48UTRP-littoralis_Contig15 166238..166249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.66.1prot_P-littoralis_Contig15.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 164933..166237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.66.1

>prot_P-littoralis_Contig15.66.1 ID=prot_P-littoralis_Contig15.66.1|Name=mRNA_P-littoralis_Contig15.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=435bp
MGPRGDIVSTSDLVRSMAYHAAAAGYSPELEYFEKVSPTFSDIEGSPDVY
RDMLRRVESYATLAGGKKVVAAKKAIRVGVSARMAEMRGRPGGPGVFAED
AADMESLFADTDHKKVICKLHRLGRYPEDNPRFYIHMVYRYYTNDAHNAL
ADEGKVLRYPSLQKTMDVKHPVDCVGSTPPEFRMFLRESKGHPVPVASLP
VPSKTRANEVVYGYDFESAVPWVPAIRAKIHNMFADLKATGSQAFRQVYP
GYLLKGAGRESGNKTVLDALARSIEMGDLARALDGIVNNAVATRVLDRAI
LVDRGITEVVCSYNRHPFRSSGEQLRERLGFFLQDSVRGVFRSAARRIPS
FCEILYTSLGIPCVTMDAFDEFCRSKNAMNYRLRDEDAWRIFIIDLQKIC
FIFHARSRADEVSRFMSENGSGDGYLRRVLSTLA*
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mRNA from alignment at P-littoralis_Contig15:164933..166249-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.66.1 ID=mRNA_P-littoralis_Contig15.66.1|Name=mRNA_P-littoralis_Contig15.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1317bp|location=Sequence derived from alignment at P-littoralis_Contig15:164933..166249- (Pylaiella littoralis U1_48)
GAGAGCGACTTCATGGGACCGCGCGGCGACATCGTGTCCACCTCCGATCT CGTCCGGTCCATGGCCTACCACGCGGCCGCGGCGGGGTACTCGCCGGAGC TGGAGTATTTCGAGAAGGTTTCGCCCACCTTTTCCGACATCGAAGGCAGC CCGGACGTCTACCGAGACATGCTCAGACGGGTCGAGAGCTACGCAACGCT GGCCGGCGGCAAGAAAGTCGTGGCCGCGAAGAAAGCGATCAGGGTTGGCG TCAGCGCACGGATGGCGGAGATGCGCGGAAGGCCGGGTGGGCCGGGCGTG TTCGCCGAGGACGCCGCCGACATGGAGTCGTTGTTTGCGGACACCGACCA CAAGAAAGTGATCTGCAAGCTGCACCGACTCGGCAGGTACCCCGAGGACA ACCCTCGGTTTTACATACACATGGTCTACAGGTACTACACGAACGACGCC CACAACGCCCTCGCGGACGAGGGCAAGGTGTTGCGGTACCCCAGCCTCCA GAAAACAATGGACGTCAAGCACCCGGTCGACTGCGTCGGGTCGACGCCGC CGGAGTTCAGGATGTTCCTCCGGGAATCCAAGGGCCACCCCGTCCCCGTC GCGTCCCTGCCCGTGCCGTCGAAGACCAGGGCCAACGAGGTAGTCTACGG GTACGACTTCGAGTCCGCCGTTCCTTGGGTACCGGCCATCCGGGCCAAGA TCCACAACATGTTCGCGGACCTGAAGGCGACCGGGTCGCAGGCGTTCAGG CAGGTGTACCCCGGCTACCTCCTGAAGGGGGCGGGGCGCGAGAGCGGCAA CAAGACCGTCCTGGACGCCCTCGCGAGGTCGATCGAGATGGGAGACCTGG CGCGTGCGCTCGACGGCATCGTCAACAACGCCGTGGCCACGCGCGTGCTA GACAGGGCTATCCTGGTGGACCGTGGGATCACGGAAGTTGTCTGCAGTTA CAATCGCCACCCGTTCCGCTCGTCCGGCGAGCAGTTGCGCGAGCGCCTGG GTTTCTTTCTCCAGGACTCCGTCCGAGGGGTGTTTCGTTCGGCCGCGAGA AGAATCCCCTCCTTCTGCGAAATTTTGTACACGAGCCTCGGCATTCCGTG CGTGACCATGGACGCGTTCGACGAGTTCTGTCGCTCCAAGAACGCCATGA ATTATCGGTTGAGGGACGAGGATGCGTGGAGGATTTTCATTATTGACTTG CAAAAGATTTGTTTTATTTTTCACGCGCGCAGCCGGGCGGACGAGGTGTC TCGGTTCATGTCGGAGAACGGGTCCGGCGATGGCTACCTTCGAAGGGTGT TGTCAACGCTCGCGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:164933..166249-

>mRNA_P-littoralis_Contig15.66.1 ID=mRNA_P-littoralis_Contig15.66.1|Name=mRNA_P-littoralis_Contig15.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1305bp|location=Sequence derived from alignment at P-littoralis_Contig15:164933..166249- (Pylaiella littoralis U1_48)
ATGGGACCGCGCGGCGACATCGTGTCCACCTCCGATCTCGTCCGGTCCAT
GGCCTACCACGCGGCCGCGGCGGGGTACTCGCCGGAGCTGGAGTATTTCG
AGAAGGTTTCGCCCACCTTTTCCGACATCGAAGGCAGCCCGGACGTCTAC
CGAGACATGCTCAGACGGGTCGAGAGCTACGCAACGCTGGCCGGCGGCAA
GAAAGTCGTGGCCGCGAAGAAAGCGATCAGGGTTGGCGTCAGCGCACGGA
TGGCGGAGATGCGCGGAAGGCCGGGTGGGCCGGGCGTGTTCGCCGAGGAC
GCCGCCGACATGGAGTCGTTGTTTGCGGACACCGACCACAAGAAAGTGAT
CTGCAAGCTGCACCGACTCGGCAGGTACCCCGAGGACAACCCTCGGTTTT
ACATACACATGGTCTACAGGTACTACACGAACGACGCCCACAACGCCCTC
GCGGACGAGGGCAAGGTGTTGCGGTACCCCAGCCTCCAGAAAACAATGGA
CGTCAAGCACCCGGTCGACTGCGTCGGGTCGACGCCGCCGGAGTTCAGGA
TGTTCCTCCGGGAATCCAAGGGCCACCCCGTCCCCGTCGCGTCCCTGCCC
GTGCCGTCGAAGACCAGGGCCAACGAGGTAGTCTACGGGTACGACTTCGA
GTCCGCCGTTCCTTGGGTACCGGCCATCCGGGCCAAGATCCACAACATGT
TCGCGGACCTGAAGGCGACCGGGTCGCAGGCGTTCAGGCAGGTGTACCCC
GGCTACCTCCTGAAGGGGGCGGGGCGCGAGAGCGGCAACAAGACCGTCCT
GGACGCCCTCGCGAGGTCGATCGAGATGGGAGACCTGGCGCGTGCGCTCG
ACGGCATCGTCAACAACGCCGTGGCCACGCGCGTGCTAGACAGGGCTATC
CTGGTGGACCGTGGGATCACGGAAGTTGTCTGCAGTTACAATCGCCACCC
GTTCCGCTCGTCCGGCGAGCAGTTGCGCGAGCGCCTGGGTTTCTTTCTCC
AGGACTCCGTCCGAGGGGTGTTTCGTTCGGCCGCGAGAAGAATCCCCTCC
TTCTGCGAAATTTTGTACACGAGCCTCGGCATTCCGTGCGTGACCATGGA
CGCGTTCGACGAGTTCTGTCGCTCCAAGAACGCCATGAATTATCGGTTGA
GGGACGAGGATGCGTGGAGGATTTTCATTATTGACTTGCAAAAGATTTGT
TTTATTTTTCACGCGCGCAGCCGGGCGGACGAGGTGTCTCGGTTCATGTC
GGAGAACGGGTCCGGCGATGGCTACCTTCGAAGGGTGTTGTCAACGCTCG
CGTAA
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