mRNA_P-littoralis_Contig15.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.50.1
Unique NamemRNA_P-littoralis_Contig15.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: Q8QNI1_ESV1K (EsV-1-96 n=2 Tax=root TaxID=1 RepID=Q8QNI1_ESV1K)

HSP 1 Score: 343 bits (881), Expect = 1.210e-115
Identity = 177/298 (59.40%), Postives = 214/298 (71.81%), Query Frame = 1
Query:    1 MRMISRRERVTADDVKSVQRRPNVEVTKSTLVIPDVPRSPIVMWGYYNRGGGSEAIKSCLRWPSSSDARCHNCAHFFDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLVHADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYRTGFCGIVPPADVKNEIGPRPSPGITAVQSIVDADP---CP-APRAPPKGLGAGARGRRSAGMRRIESKRDEVLNNDFCTRLKKARLDPALMVRKKEADVSNTLVFSMGIEIKKRSR 882
            MR I  RERV ADD+KS+QR  NV V  +T+ IP+ P SPIV+WG       ++ +K+CL+WP S D RCHNCAHFF+GVPVPLPVSRDDLR VYFCEG FCSWQCAKSFNMRETSPAGRGNRNMYI++LAYKTWIKL  +   D  T++ ++TYC +RLHPA PR+ L EFGG MSIEEYR  FCGI+PP+++  +  P  +     V   +D D    CP   R   + + A A      G RRI++ R++  NN F  RLK+ARLDPA+M RKKE DVSNTL+ SMGIEIKKRSR
Sbjct:    1 MRNILHRERVEADDIKSIQRVSNVRVVNNTITIPNTPESPIVVWGRSFHEDDTDVVKACLQWPLSYDKRCHNCAHFFEGVPVPLPVSRDDLRHVYFCEGKFCSWQCAKSFNMRETSPAGRGNRNMYISVLAYKTWIKLKKSV-IDIETKQKMKTYCDYRLHPAAPRAKLQEFGGEMSIEEYRKDFCGIIPPSEIIEKTSPLLNIRRMCVLPFIDTDSAGSCPNVLRKSVQHIEATAP---FVGTRRIDTNREQEFNNSFVDRLKRARLDPAIMRRKKELDVSNTLLASMGIEIKKRSR 294          
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: B5LWB1_9PHYC (Putative VLTF2 transcription factor n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWB1_9PHYC)

HSP 1 Score: 178 bits (451), Expect = 1.450e-51
Identity = 104/243 (42.80%), Postives = 137/243 (56.38%), Query Frame = 1
Query:  160 EAIKSCLR--WPSSSDARCHNCAHFFDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLVHADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYRTGFCGIVPPADVKNEIGPRPSPGITAVQSIVDADPCPAPRAPPKGLGAGARGRRSAGMRRIESKRDEVLNNDFCTRLKKARLDPALMVRKKEADVSNTLVFSMGIEIKKRSR 882
            + I+ CL   WP+S+D  C +C H  DGVPVPLP S D L+KVY C G FCSWQC K++NMR T PAGRGNRNMYIALLA++TW+K+    + DD  R  L+TY    ++PA P  +L  FGG  +I E+R G  GIV P +   +I     P  T  Q +              GL      RR  G R      +   +N FC +L KAR D ++M RKK     NTL+ +MG+ ++ R +
Sbjct:    2 KVIQDCLSQDWPTSTDNLCQHCCHPIDGVPVPLPQSYDTLKKVYHCRGQFCSWQCVKAYNMRSTVPAGRGNRNMYIALLAHRTWVKV--RKNVDDFER--LRTYACTSINPAPPPESLRIFGGDKTIHEFRKGSFGIVHPEEATVDI-----PFATTRQRLS------------LGLDHNDDSRRVLGNRENSGVHNH--SNSFCAKLDKARTDKSIMKRKKRDSDKNTLMSTMGVVVETRKK 221          
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: Q6XM22_9PHYC (FirrV-1-B14 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM22_9PHYC)

HSP 1 Score: 164 bits (415), Expect = 5.550e-46
Identity = 73/131 (55.73%), Postives = 94/131 (71.76%), Query Frame = 1
Query:  184 WPSSSDARCHNCAHFFDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLV-HADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYRTGFCGIVPP 573
            WP+S++  CHNC H FDGVPVPLP S D+ R+VY C+G FCSWQC K++N+++T   G+G+RNMYIALLAYKTW KL  H   A +   ++L+ Y    + PA  R NL  FGG +SI+EYR GF GI+PP
Sbjct:   24 WPTSANVCCHNCCHPFDGVPVPLPYSYDERRRVYLCKGNFCSWQCVKAYNIQDTLVTGKGDRNMYIALLAYKTWYKLTAHTRLATNDGYQALKGYAYTSIQPAQSRENLQMFGGPLSIQEYRRGFFGIMPP 154          
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: Q6XLU1_9PHYC (FirrV-1-I5 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU1_9PHYC)

HSP 1 Score: 160 bits (404), Expect = 3.330e-44
Identity = 67/133 (50.38%), Postives = 98/133 (73.68%), Query Frame = 1
Query:  184 WPSSSDARCHNCAHFFDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLVHADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYRTGFCGIVPPADV 582
            WP  +++ CHNC H F+GVPVPLP   D+ ++VYFC G+FCSWQCAK++N++    +G+GNRNMYI+LLA+KTW+K++ +  +     ESL+TY   ++ PA PR  L  FGG+ +I++YR GF GI+PP ++
Sbjct:   27 WPRRTESCCHNCCHPFEGVPVPLPYFYDERKQVYFCSGSFCSWQCAKAYNIQLPVSSGKGNRNMYISLLAHKTWVKIM-SKTSHGVPHESLKTYAFTKIDPAPPRETLHMFGGNKTIQQYREGFFGIIPPEEI 158          
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: A0A1Y1IVF4_KLENI (MYM-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVF4_KLENI)

HSP 1 Score: 82.0 bits (201), Expect = 1.370e-14
Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  184 WPSSSDARCHNCAHFFDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLVHADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYRTGFCGIV 567
            WP  SDA C  C H FD +P+PLPV  D+ R V+ C GTFCS+ CAK+FN+   S   + +R   +  L     IK     DA      S  ++    +  A  R +L  FGG  SIEE+R G   +V
Sbjct:    5 WPLRSDAACWWCCHQFDTIPIPLPVHYDEARNVFQCMGTFCSFGCAKAFNLSRNSV--KRDRTCTLLTLFRNKVIK----KDASYPLWNSPDSF---GIRAAGDRYSLRLFGGPKSIEEFREGMDVLV 123          
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: A0A6C0FAJ4_9ZZZZ (MYM-type domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FAJ4_9ZZZZ)

HSP 1 Score: 75.1 bits (183), Expect = 7.090e-12
Identity = 43/120 (35.83%), Postives = 57/120 (47.50%), Query Frame = 1
Query:  187 PSSSDARCHNCAHFFDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLVHADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYR 546
            P+SS+  C  C H F G P  LP   D+ R+ Y   G FCSW C KS+NM +       NRN  +  +  K  IK V                       A PR+ L+EFGGH++IE++R
Sbjct:  173 PTSSNLWCWWCCHKFSGPPCYLPTKYDEYRERYVVIGNFCSWSCVKSYNM-DIGDNSTNNRNFILRRILKKLEIKDVKN---------------------APPRTALLEFGGHLTIEKFR 270          
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: A0A2E0WIW2_9CHLR (MYM-type domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E0WIW2_9CHLR)

HSP 1 Score: 65.9 bits (159), Expect = 1.950e-9
Identity = 41/116 (35.34%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  208 CHNCAHFFDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGN---RNMYIALLAYKTWIKLVHADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYR 546
            C  C H F G P+ +P+  DD RK +   G FCSW C KS+ + +T    +G+    NM I  +  K + K         G+           + PA PR +L+EFGG MSI+E+R
Sbjct:    4 CWWCCHDFKGTPLTMPLKYDDRRKTFTTSGRFCSWSCMKSYAL-DTKGLTQGSIVCGNMII--MRKKLFGKF--------GS-----------IKPAPPRQSLIEFGGMMSIDEFR 97          
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: A0A0N7HVN3_9PHYC (MYM-type domain-containing protein n=5 Tax=unclassified Prasinovirus TaxID=880158 RepID=A0A0N7HVN3_9PHYC)

HSP 1 Score: 63.5 bits (153), Expect = 1.830e-8
Identity = 35/113 (30.97%), Postives = 51/113 (45.13%), Query Frame = 1
Query:  208 CHNCAHFFDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLVHADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYR 546
            C  C H F+G P+ +P   DD R  ++  G FCSW C KS+ + +            I L+  K + ++ H                   + PA  R  LVEFGG ++IEE+R
Sbjct:   24 CWWCCHTFEGTPLTVPHRYDDRRSKFYTAGNFCSWSCVKSYAIDKFGDVKGSIVCGNIVLMRRKMYNQIGH-------------------VKPAPNRFRLVEFGGDLTIEEFR 117          
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: A0A1Y1IRN1_KLENI (Uncharacterized protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRN1_KLENI)

HSP 1 Score: 64.7 bits (156), Expect = 5.560e-8
Identity = 42/113 (37.17%), Postives = 58/113 (51.33%), Query Frame = 1
Query:  229 FDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLVHADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYRTGFCGIV 567
            FD +P+PLPV  D+ R V+ C GTFCS+ CAK+FN+   S   + +R   +  L     IK     DA      S  ++    +  A  R +L  FGG  SIEE+R G   +V
Sbjct:  430 FDTIPIPLPVHYDEARNVFQCMGTFCSFGCAKAFNLSRNSV--KRDRTCTLLTLFRNKVIK----KDASYPLWNSPDSF---GIRAAGDRYSLRLFGGPKSIEEFREGMDVLV 533          
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Match: A0A250XSF4_9CHLO (FCP1 homology domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XSF4_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 1.830e-7
Identity = 40/127 (31.50%), Postives = 57/127 (44.88%), Query Frame = 1
Query:  184 WPSSSDARCHNCAHFFDGVPVPLPVSRDDLRKVYFCEGTFCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLVHADDADDGTRESLQTYCRHRLHPALPRSNLVEFGGHMSIEEYRTGFCGI 564
            WP S+   C+ C H FD  P+ +PV      + +   G +CS  CA + N          NR+     +A    +  + A   D G RE         + PA PR  L  FGGHMSI+ +R+  CG+
Sbjct:  522 WPLSTSVLCYWCCHRFDSAPLGMPVRYVASLQKFLVTGCYCSLACAAAHNFEL-------NRHSPQECIARHALLNAL-AQVLDPGRREP--------VGPAPPRLALAAFGGHMSIDHFRS--CGV 630          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Q8QNI1_ESV1K1.210e-11559.40EsV-1-96 n=2 Tax=root TaxID=1 RepID=Q8QNI1_ESV1K[more]
B5LWB1_9PHYC1.450e-5142.80Putative VLTF2 transcription factor n=1 Tax=Feldma... [more]
Q6XM22_9PHYC5.550e-4655.73FirrV-1-B14 n=1 Tax=Feldmannia irregularis virus a... [more]
Q6XLU1_9PHYC3.330e-4450.38FirrV-1-I5 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A1Y1IVF4_KLENI1.370e-1439.06MYM-type domain-containing protein n=1 Tax=Klebsor... [more]
A0A6C0FAJ4_9ZZZZ7.090e-1235.83MYM-type domain-containing protein n=1 Tax=viral m... [more]
A0A2E0WIW2_9CHLR1.950e-935.34MYM-type domain-containing protein n=1 Tax=Dehaloc... [more]
A0A0N7HVN3_9PHYC1.830e-830.97MYM-type domain-containing protein n=5 Tax=unclass... [more]
A0A1Y1IRN1_KLENI5.560e-837.17Uncharacterized protein (Fragment) n=1 Tax=Klebsor... [more]
A0A250XSF4_9CHLO1.830e-731.50FCP1 homology domain-containing protein n=1 Tax=Ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:138813..139700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog654926.Q8QNI1_ESV1K
Model size888
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.99e-116
EggNOG OGs4QF84@10239|Viruses,4QWN2@35237|dsDNA viruses no RNA stage
Ec32 ortholog descriptionEsV-1-96 zinc finger, MYM-type
Ec32 orthologEc-06_005850.1
Cds size888
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.8007672-CDS-P-littoralis_Contig15:138812..1397001680789710.8007672-CDS-P-littoralis_Contig15:138812..139700Pylaiella littoralis U1_48CDSP-littoralis_Contig15 138813..139700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.50.1prot_P-littoralis_Contig15.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 138813..139700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.50.1

>prot_P-littoralis_Contig15.50.1 ID=prot_P-littoralis_Contig15.50.1|Name=mRNA_P-littoralis_Contig15.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=296bp
MRMISRRERVTADDVKSVQRRPNVEVTKSTLVIPDVPRSPIVMWGYYNRG
GGSEAIKSCLRWPSSSDARCHNCAHFFDGVPVPLPVSRDDLRKVYFCEGT
FCSWQCAKSFNMRETSPAGRGNRNMYIALLAYKTWIKLVHADDADDGTRE
SLQTYCRHRLHPALPRSNLVEFGGHMSIEEYRTGFCGIVPPADVKNEIGP
RPSPGITAVQSIVDADPCPAPRAPPKGLGAGARGRRSAGMRRIESKRDEV
LNNDFCTRLKKARLDPALMVRKKEADVSNTLVFSMGIEIKKRSRV*
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mRNA from alignment at P-littoralis_Contig15:138813..139700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.50.1 ID=mRNA_P-littoralis_Contig15.50.1|Name=mRNA_P-littoralis_Contig15.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=888bp|location=Sequence derived from alignment at P-littoralis_Contig15:138813..139700+ (Pylaiella littoralis U1_48)
ATGCGTATGATATCGCGCAGAGAGCGGGTGACGGCCGACGACGTCAAGTC CGTCCAGCGGCGTCCGAACGTCGAGGTTACGAAAAGCACACTCGTGATCC CAGATGTCCCCCGAAGCCCGATCGTTATGTGGGGGTACTACAACAGGGGC GGCGGTTCGGAGGCAATCAAGTCTTGCCTCCGCTGGCCGTCTTCCTCGGA TGCCCGTTGCCACAACTGCGCACACTTTTTCGACGGTGTTCCGGTGCCGC TCCCGGTCAGCAGAGACGACCTTCGAAAGGTGTACTTCTGCGAGGGGACC TTCTGTTCTTGGCAGTGCGCGAAGTCGTTCAACATGAGAGAGACTTCGCC GGCGGGAAGAGGGAATAGAAACATGTACATCGCTCTGTTGGCGTACAAAA CGTGGATAAAGCTCGTGCACGCGGACGACGCGGACGACGGCACCCGTGAA AGCCTGCAAACGTACTGCCGTCATAGACTACACCCGGCCTTGCCCAGGTC CAACCTCGTCGAGTTCGGAGGGCACATGTCCATCGAAGAGTACAGGACAG GGTTCTGCGGCATCGTTCCGCCGGCGGATGTGAAGAACGAGATTGGCCCC CGGCCGAGCCCCGGGATAACGGCGGTCCAGTCCATCGTCGACGCGGACCC CTGTCCGGCTCCGCGCGCCCCGCCGAAGGGTTTGGGCGCTGGCGCTCGTG GTCGTAGATCGGCGGGAATGAGGCGGATAGAATCGAAGCGTGACGAGGTG TTGAATAATGATTTTTGCACGAGGCTAAAGAAGGCCAGGCTGGATCCCGC GCTCATGGTCCGCAAGAAAGAGGCGGACGTTTCCAACACTCTGGTGTTTT CCATGGGTATAGAAATCAAGAAGAGGTCGAGGGTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:138813..139700+

>mRNA_P-littoralis_Contig15.50.1 ID=mRNA_P-littoralis_Contig15.50.1|Name=mRNA_P-littoralis_Contig15.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=888bp|location=Sequence derived from alignment at P-littoralis_Contig15:138813..139700+ (Pylaiella littoralis U1_48)
ATGCGTATGATATCGCGCAGAGAGCGGGTGACGGCCGACGACGTCAAGTC
CGTCCAGCGGCGTCCGAACGTCGAGGTTACGAAAAGCACACTCGTGATCC
CAGATGTCCCCCGAAGCCCGATCGTTATGTGGGGGTACTACAACAGGGGC
GGCGGTTCGGAGGCAATCAAGTCTTGCCTCCGCTGGCCGTCTTCCTCGGA
TGCCCGTTGCCACAACTGCGCACACTTTTTCGACGGTGTTCCGGTGCCGC
TCCCGGTCAGCAGAGACGACCTTCGAAAGGTGTACTTCTGCGAGGGGACC
TTCTGTTCTTGGCAGTGCGCGAAGTCGTTCAACATGAGAGAGACTTCGCC
GGCGGGAAGAGGGAATAGAAACATGTACATCGCTCTGTTGGCGTACAAAA
CGTGGATAAAGCTCGTGCACGCGGACGACGCGGACGACGGCACCCGTGAA
AGCCTGCAAACGTACTGCCGTCATAGACTACACCCGGCCTTGCCCAGGTC
CAACCTCGTCGAGTTCGGAGGGCACATGTCCATCGAAGAGTACAGGACAG
GGTTCTGCGGCATCGTTCCGCCGGCGGATGTGAAGAACGAGATTGGCCCC
CGGCCGAGCCCCGGGATAACGGCGGTCCAGTCCATCGTCGACGCGGACCC
CTGTCCGGCTCCGCGCGCCCCGCCGAAGGGTTTGGGCGCTGGCGCTCGTG
GTCGTAGATCGGCGGGAATGAGGCGGATAGAATCGAAGCGTGACGAGGTG
TTGAATAATGATTTTTGCACGAGGCTAAAGAAGGCCAGGCTGGATCCCGC
GCTCATGGTCCGCAAGAAAGAGGCGGACGTTTCCAACACTCTGGTGTTTT
CCATGGGTATAGAAATCAAGAAGAGGTCGAGGGTGTGA
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