mRNA_P-littoralis_Contig15.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.44.1
Unique NamemRNA_P-littoralis_Contig15.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: Q8QNH0_ESV1K (EsV-1-108 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH0_ESV1K)

HSP 1 Score: 238 bits (606), Expect = 5.420e-76
Identity = 130/230 (56.52%), Postives = 162/230 (70.43%), Query Frame = 1
Query:    1 TMLTTYRCASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIGSPSETMHVLGRKLVKFYAGNKALAGRSFDFVFIEQQLSRAVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRHAFPEAALRSIDFERRGRGLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSFAFFLNK---KVSRDREAPWFISVEEHAEGKDPEEQA 681
            T +  YRCASIDIGVVNLA CVTEF    DG F F++ H++R  IG+  ETMH LG+KL+ F++ + AL     D+VFIEQQLSRAVKN VLSY+T++YFET  +        +    + FVSPK KF AVR+AFPE  L SI+FERRGR LKKL+VE+ARLLF  F V VGL A+ +YG+KLDD+SD FLQSFAFFL K   +++       F+ VEE+ E KD +EQA
Sbjct:    3 TAIQRYRCASIDIGVVNLAFCVTEFVSRIDGTFDFDLVHVQRVKIGNTRETMHDLGKKLLSFFSASDALRHEKLDYVFIEQQLSRAVKNIVLSYITMAYFETKRIGC------SDGTKISFVSPKKKFAAVRYAFPENVLSSINFERRGRELKKLTVEVARLLFTEFDVKVGLDAVTKYGTKLDDVSDAFLQSFAFFLEKFPSELAARGGRSSFVGVEENRESKDADEQA 226          
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: D8LPD8_ECTSI (EsV-1-108 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD8_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.540e-75
Identity = 131/230 (56.96%), Postives = 160/230 (69.57%), Query Frame = 1
Query:    1 TMLTTYRCASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIGSPSETMHVLGRKLVKFYAGNKALAGRSFDFVFIEQQLSRAVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRHAFPEAALRSIDFERRGRGLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSFAFFLNK---KVSRDREAPWFISVEEHAEGKDPEEQA 681
            T + TYRCASIDIGV+NLA CVTEF    DG F F++ H +R  IG+  ET+  LGRKL+ F + + AL     D+VFIEQQLSRAVKN VLSY+T++YFET  +          +  +VFVSPKNKF AVR+AFP+  L SI+FERRGR LKKL+VE+ARLLF AF V VGL A+   G+KLDD+SD FLQSFAFFL K    ++       FI VEE+ E KD +EQA
Sbjct:    3 TAMQTYRCASIDIGVINLAFCVTEFVSRTDGSFDFDLLHAQRVKIGNTRETIRDLGRKLLSFLSASDALRHDKLDYVFIEQQLSRAVKNIVLSYITMAYFETKRIGC------GDSTKIVFVSPKNKFAAVRYAFPKGVLSSINFERRGRELKKLTVEVARLLFTAFGVKVGLDAMATNGTKLDDVSDAFLQSFAFFLEKFPSNLAARGVGSSFIRVEENRESKDADEQA 226          
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: B5LWC2_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC2_9PHYC)

HSP 1 Score: 157 bits (398), Expect = 8.650e-45
Identity = 88/201 (43.78%), Postives = 124/201 (61.69%), Query Frame = 1
Query:   19 RCASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIGSPSETMHVLGRKLVKFYAGNKALAGRSFDFVFIEQQLSRAVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRHAFPEAA-LRSIDFERRG-RGLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSFAFFL-NKKVSR 612
            R  SID+G+VNLA C+ +F EL  G FRF++ H+E+  +G+  ++ H L + ++ F+   + +  R  D + IEQQ++RA+KN +L+Y  +SYF T        +    AA   FV P  KF+A R AF  +  LR I+F   G R LK+LSVE+A+ +F  F V  GL+ + EY  KLDD+ DVFLQSFAFFL  KK  R
Sbjct:    4 RVLSIDVGIVNLAYCIIDFEELAPGAFRFDLVHVEKGQVGTVRQSTHQLAKNVIHFFKKAEPIQRRKVDVILIEQQMTRAIKNSILAYTIMSYFYT--------NEETGAAQTCFVQPWKKFQATRIAFENSGCLRGINFNVCGSRELKRLSVEVAKQIFAEFQVLEGLRVIEEYKPKLDDVCDVFLQSFAFFLLGKKTGR 196          
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: Q6XM10_9PHYC (FirrV-1-B26 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM10_9PHYC)

HSP 1 Score: 130 bits (326), Expect = 5.240e-34
Identity = 79/195 (40.51%), Postives = 120/195 (61.54%), Query Frame = 1
Query:   19 RCASIDIGVVNLALCVTEFTEL-GDGKFRFNVTHLERASIGSPSETMHVLGRKLVKFYAGNKALAGRSFDFVFIEQQLSRAVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRHAFPE-AALRSIDFERRG-RGLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSFAFFL 594
            R  S+DIG++N+A C+ +F E  G  ++ F++ H+E+ SIG+  ++M+ L   ++ F    + +  ++ D V IE+QL RA+KN VLS+V ++Y   V+V      R        FV    KF AV++ F + A ++ +DF++RG R LK+LSVE+A  LF  F    GL+A+ EY  K+DDI DVFLQSF  FL
Sbjct:    7 RVLSVDIGIINMAYCIIDFWEKPGSAEYEFSLVHIEKRSIGTIRQSMYELMINVIAFLNEAEPIHAKTIDVVLIEKQLPRAIKNVVLSFVVMTY---VHVRCTNDAR--------FVQSWKKFDAVKYVFQKFACVQQVDFKKRGSRPLKQLSVELATRLFAEFQCLEGLRAIEEYRPKIDDICDVFLQSFTVFL 190          
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: A0A835YWP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.020e-7
Identity = 60/193 (31.09%), Postives = 97/193 (50.26%), Query Frame = 1
Query:   22 CASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIG-SPSETMH-VLGRKLVKFYAGNKALAGRSFDFVFIEQQLSR-AVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRH-AFPEAALRSIDFER-RGR-GLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSF 582
            C +ID+G++NLA+CVTE  ++G       V   E+ +IG    E ++ VL   +    A   A    +   V IEQQ +R AVKN+ ++    + +              A   V FVSP+ KF+ +   A  + +L  +DF R +GR  +K+  +++A+ L   +  +V L+AL    +KLDDI D    +F
Sbjct:    3 CVAIDVGILNLAVCVTE--DVGGVPV---VRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVK------------AGVPVRFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALAS-NAKLDDICDAATMAF 177          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q8QNH0_ESV1K5.420e-7656.52EsV-1-108 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPD8_ECTSI1.540e-7556.96EsV-1-108 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
B5LWC2_9PHYC8.650e-4543.78Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM10_9PHYC5.240e-3440.51FirrV-1-B26 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A835YWP7_9STRA5.020e-731.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:129325..130008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size684
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-108 resolvase
Ec32 orthologEc-06_005740.1
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.5142627-UTR-P-littoralis_Contig15:129324..1293271680789710.5142627-UTR-P-littoralis_Contig15:129324..129327Pylaiella littoralis U1_48UTRP-littoralis_Contig15 129325..129327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.528623-CDS-P-littoralis_Contig15:129327..1300081680789710.528623-CDS-P-littoralis_Contig15:129327..130008Pylaiella littoralis U1_48CDSP-littoralis_Contig15 129328..130008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.44.1prot_P-littoralis_Contig15.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 129328..130008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.44.1

>prot_P-littoralis_Contig15.44.1 ID=prot_P-littoralis_Contig15.44.1|Name=mRNA_P-littoralis_Contig15.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=227bp
MLTTYRCASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIGSPSET
MHVLGRKLVKFYAGNKALAGRSFDFVFIEQQLSRAVKNYVLSYVTLSYFE
TVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRHAFPEAALRSIDFERRGRG
LKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSFAFFLNKK
VSRDREAPWFISVEEHAEGKDPEEQA*
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mRNA from alignment at P-littoralis_Contig15:129325..130008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.44.1 ID=mRNA_P-littoralis_Contig15.44.1|Name=mRNA_P-littoralis_Contig15.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig15:129325..130008+ (Pylaiella littoralis U1_48)
ACCATGCTCACGACCTACCGCTGCGCCTCGATCGACATCGGGGTCGTCAA TCTCGCTCTCTGTGTGACGGAATTCACGGAACTTGGTGATGGCAAGTTCC GTTTCAACGTGACTCATCTTGAACGCGCCAGCATCGGCAGCCCGAGTGAG ACCATGCACGTCCTGGGTAGGAAGCTAGTGAAGTTTTATGCCGGCAACAA GGCCCTCGCGGGAAGGTCGTTCGATTTCGTGTTCATCGAGCAACAGCTCT CGCGCGCGGTGAAGAACTACGTCTTGTCGTACGTCACCCTGTCGTACTTC GAGACGGTGAATGTGACTGTGGACCGACCCGATCGTCCCGCGGCGGCCGC GGCCGTGGTGTTTGTGTCGCCGAAGAACAAGTTCAGAGCCGTGAGGCACG CTTTTCCCGAGGCCGCCCTGCGTTCCATCGACTTCGAACGACGGGGAAGA GGGCTGAAGAAGTTGTCCGTGGAAATTGCGAGGCTCTTGTTCGACGCCTT CGCCGTGGATGTTGGTCTGAAGGCATTGCGCGAGTACGGTAGCAAGCTCG ACGACATATCGGACGTCTTTCTACAGAGCTTTGCGTTTTTTCTGAACAAG AAGGTCTCACGCGATCGGGAAGCGCCGTGGTTTATTAGCGTTGAAGAGCA CGCAGAGGGTAAAGACCCCGAGGAACAGGCATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:129325..130008+

>mRNA_P-littoralis_Contig15.44.1 ID=mRNA_P-littoralis_Contig15.44.1|Name=mRNA_P-littoralis_Contig15.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=681bp|location=Sequence derived from alignment at P-littoralis_Contig15:129325..130008+ (Pylaiella littoralis U1_48)
ATGCTCACGACCTACCGCTGCGCCTCGATCGACATCGGGGTCGTCAATCT
CGCTCTCTGTGTGACGGAATTCACGGAACTTGGTGATGGCAAGTTCCGTT
TCAACGTGACTCATCTTGAACGCGCCAGCATCGGCAGCCCGAGTGAGACC
ATGCACGTCCTGGGTAGGAAGCTAGTGAAGTTTTATGCCGGCAACAAGGC
CCTCGCGGGAAGGTCGTTCGATTTCGTGTTCATCGAGCAACAGCTCTCGC
GCGCGGTGAAGAACTACGTCTTGTCGTACGTCACCCTGTCGTACTTCGAG
ACGGTGAATGTGACTGTGGACCGACCCGATCGTCCCGCGGCGGCCGCGGC
CGTGGTGTTTGTGTCGCCGAAGAACAAGTTCAGAGCCGTGAGGCACGCTT
TTCCCGAGGCCGCCCTGCGTTCCATCGACTTCGAACGACGGGGAAGAGGG
CTGAAGAAGTTGTCCGTGGAAATTGCGAGGCTCTTGTTCGACGCCTTCGC
CGTGGATGTTGGTCTGAAGGCATTGCGCGAGTACGGTAGCAAGCTCGACG
ACATATCGGACGTCTTTCTACAGAGCTTTGCGTTTTTTCTGAACAAGAAG
GTCTCACGCGATCGGGAAGCGCCGTGGTTTATTAGCGTTGAAGAGCACGC
AGAGGGTAAAGACCCCGAGGAACAGGCATAG
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