mRNA_P-littoralis_Contig15.44.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: Q8QNH0_ESV1K (EsV-1-108 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH0_ESV1K) HSP 1 Score: 238 bits (606), Expect = 5.420e-76 Identity = 130/230 (56.52%), Postives = 162/230 (70.43%), Query Frame = 1
Query: 1 TMLTTYRCASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIGSPSETMHVLGRKLVKFYAGNKALAGRSFDFVFIEQQLSRAVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRHAFPEAALRSIDFERRGRGLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSFAFFLNK---KVSRDREAPWFISVEEHAEGKDPEEQA 681
T + YRCASIDIGVVNLA CVTEF DG F F++ H++R IG+ ETMH LG+KL+ F++ + AL D+VFIEQQLSRAVKN VLSY+T++YFET + + + FVSPK KF AVR+AFPE L SI+FERRGR LKKL+VE+ARLLF F V VGL A+ +YG+KLDD+SD FLQSFAFFL K +++ F+ VEE+ E KD +EQA
Sbjct: 3 TAIQRYRCASIDIGVVNLAFCVTEFVSRIDGTFDFDLVHVQRVKIGNTRETMHDLGKKLLSFFSASDALRHEKLDYVFIEQQLSRAVKNIVLSYITMAYFETKRIGC------SDGTKISFVSPKKKFAAVRYAFPENVLSSINFERRGRELKKLTVEVARLLFTEFDVKVGLDAVTKYGTKLDDVSDAFLQSFAFFLEKFPSELAARGGRSSFVGVEENRESKDADEQA 226
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: D8LPD8_ECTSI (EsV-1-108 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD8_ECTSI) HSP 1 Score: 236 bits (603), Expect = 1.540e-75 Identity = 131/230 (56.96%), Postives = 160/230 (69.57%), Query Frame = 1
Query: 1 TMLTTYRCASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIGSPSETMHVLGRKLVKFYAGNKALAGRSFDFVFIEQQLSRAVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRHAFPEAALRSIDFERRGRGLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSFAFFLNK---KVSRDREAPWFISVEEHAEGKDPEEQA 681
T + TYRCASIDIGV+NLA CVTEF DG F F++ H +R IG+ ET+ LGRKL+ F + + AL D+VFIEQQLSRAVKN VLSY+T++YFET + + +VFVSPKNKF AVR+AFP+ L SI+FERRGR LKKL+VE+ARLLF AF V VGL A+ G+KLDD+SD FLQSFAFFL K ++ FI VEE+ E KD +EQA
Sbjct: 3 TAMQTYRCASIDIGVINLAFCVTEFVSRTDGSFDFDLLHAQRVKIGNTRETIRDLGRKLLSFLSASDALRHDKLDYVFIEQQLSRAVKNIVLSYITMAYFETKRIGC------GDSTKIVFVSPKNKFAAVRYAFPKGVLSSINFERRGRELKKLTVEVARLLFTAFGVKVGLDAMATNGTKLDDVSDAFLQSFAFFLEKFPSNLAARGVGSSFIRVEENRESKDADEQA 226
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: B5LWC2_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC2_9PHYC) HSP 1 Score: 157 bits (398), Expect = 8.650e-45 Identity = 88/201 (43.78%), Postives = 124/201 (61.69%), Query Frame = 1
Query: 19 RCASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIGSPSETMHVLGRKLVKFYAGNKALAGRSFDFVFIEQQLSRAVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRHAFPEAA-LRSIDFERRG-RGLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSFAFFL-NKKVSR 612
R SID+G+VNLA C+ +F EL G FRF++ H+E+ +G+ ++ H L + ++ F+ + + R D + IEQQ++RA+KN +L+Y +SYF T + AA FV P KF+A R AF + LR I+F G R LK+LSVE+A+ +F F V GL+ + EY KLDD+ DVFLQSFAFFL KK R
Sbjct: 4 RVLSIDVGIVNLAYCIIDFEELAPGAFRFDLVHVEKGQVGTVRQSTHQLAKNVIHFFKKAEPIQRRKVDVILIEQQMTRAIKNSILAYTIMSYFYT--------NEETGAAQTCFVQPWKKFQATRIAFENSGCLRGINFNVCGSRELKRLSVEVAKQIFAEFQVLEGLRVIEEYKPKLDDVCDVFLQSFAFFLLGKKTGR 196
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: Q6XM10_9PHYC (FirrV-1-B26 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM10_9PHYC) HSP 1 Score: 130 bits (326), Expect = 5.240e-34 Identity = 79/195 (40.51%), Postives = 120/195 (61.54%), Query Frame = 1
Query: 19 RCASIDIGVVNLALCVTEFTEL-GDGKFRFNVTHLERASIGSPSETMHVLGRKLVKFYAGNKALAGRSFDFVFIEQQLSRAVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRHAFPE-AALRSIDFERRG-RGLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSFAFFL 594
R S+DIG++N+A C+ +F E G ++ F++ H+E+ SIG+ ++M+ L ++ F + + ++ D V IE+QL RA+KN VLS+V ++Y V+V R FV KF AV++ F + A ++ +DF++RG R LK+LSVE+A LF F GL+A+ EY K+DDI DVFLQSF FL
Sbjct: 7 RVLSVDIGIINMAYCIIDFWEKPGSAEYEFSLVHIEKRSIGTIRQSMYELMINVIAFLNEAEPIHAKTIDVVLIEKQLPRAIKNVVLSFVVMTY---VHVRCTNDAR--------FVQSWKKFDAVKYVFQKFACVQQVDFKKRGSRPLKQLSVELATRLFAEFQCLEGLRAIEEYRPKIDDICDVFLQSFTVFL 190
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Match: A0A835YWP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP7_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 5.020e-7 Identity = 60/193 (31.09%), Postives = 97/193 (50.26%), Query Frame = 1
Query: 22 CASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIG-SPSETMH-VLGRKLVKFYAGNKALAGRSFDFVFIEQQLSR-AVKNYVLSYVTLSYFETVNVTVDRPDRPAAAAAVVFVSPKNKFRAVRH-AFPEAALRSIDFER-RGR-GLKKLSVEIARLLFDAFAVDVGLKALREYGSKLDDISDVFLQSF 582
C +ID+G++NLA+CVTE ++G V E+ +IG E ++ VL + A A + V IEQQ +R AVKN+ ++ + + A V FVSP+ KF+ + A + +L +DF R +GR +K+ +++A+ L + +V L+AL +KLDDI D +F
Sbjct: 3 CVAIDVGILNLAVCVTE--DVGGVPV---VRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVK------------AGVPVRFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALAS-NAKLDDICDAATMAF 177 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig15.44.1 >prot_P-littoralis_Contig15.44.1 ID=prot_P-littoralis_Contig15.44.1|Name=mRNA_P-littoralis_Contig15.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=227bp MLTTYRCASIDIGVVNLALCVTEFTELGDGKFRFNVTHLERASIGSPSETback to top mRNA from alignment at P-littoralis_Contig15:129325..130008+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig15.44.1 ID=mRNA_P-littoralis_Contig15.44.1|Name=mRNA_P-littoralis_Contig15.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig15:129325..130008+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig15:129325..130008+ >mRNA_P-littoralis_Contig15.44.1 ID=mRNA_P-littoralis_Contig15.44.1|Name=mRNA_P-littoralis_Contig15.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=681bp|location=Sequence derived from alignment at P-littoralis_Contig15:129325..130008+ (Pylaiella littoralis U1_48)back to top |