mRNA_P-littoralis_Contig15.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.37.1
Unique NamemRNA_P-littoralis_Contig15.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.37.1 vs. uniprot
Match: D8LPF0_ECTSI (EsV-1-124 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPF0_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.530e-35
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 1 
Query:   58 NISVGPYTFPSTEPVKGSVLVTDGTGNLSFSPAN--TRVEVSAAAHVVAASEDIVAITVAQDTALTLPDPATKVVGNILYVVKEAAGAHVVTIAPSGAELISGQTSHVLSSEYGAAKLYTNGTDWFIL 435
            NI +G + +PST P+ GSVL TDG GNL+F   N  T V+ +A A+ ++ S+DIVA+    DT LTLPDP++KVVG+++ VVKE  G + VT+ P G EL+SG +S VLS  YG+ K+YTNGTDWF L
Sbjct:   32 NIQIGLFNWPSTTPLPGSVLKTDGLGNLTFEVPNVHTSVDTAAPAYAISTSDDIVAVAGTLDTTLTLPDPSSKVVGDLIVVVKEGGGDNSVTVVPFGTELLSGGSSVVLSQAYGSLKIYTNGTDWFAL 159
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BLAST of mRNA_P-littoralis_Contig15.37.1 vs. uniprot
Match: Q8QNF5_ESV1K (EsV-1-124 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNF5_ESV1K)

HSP 1 Score: 124 bits (311), Expect = 1.240e-33
Identity = 66/128 (51.56%), Postives = 92/128 (71.88%), Query Frame = 1 
Query:   58 NISVGPYTFPSTEPVKGSVLVTDGTGNLSFSPAN--TRVEVSAAAHVVAASEDIVAITVAQDTALTLPDPATKVVGNILYVVKEAAGAHVVTIAPSGAELISGQTSHVLSSEYGAAKLYTNGTDWFIL 435
            +I +G +T+PST P  GSVL TDG GNL+F   N  T V+ +++A+ ++ S+DIVA+  + DT LTLPDP+ KV G+++ +VKE  G + VT+ P G EL+SG +S VLS  YG+ K+YTNGTDWF L
Sbjct:   19 SIQIGLFTWPSTTPPAGSVLKTDGLGNLTFEVPNVHTAVDTASSAYAISTSDDIVAVAGSLDTTLTLPDPSAKVTGDMIVIVKEGGGENSVTVVPFGTELLSGGSSVVLSQPYGSFKIYTNGTDWFAL 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPF0_ECTSI5.530e-3553.91EsV-1-124 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNF5_ESV1K1.240e-3351.56EsV-1-124 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:115792..116232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size441
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-124
Ec32 orthologEc-06_005610.1
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.2816083-CDS-P-littoralis_Contig15:115791..1162291680789710.2816083-CDS-P-littoralis_Contig15:115791..116229Pylaiella littoralis U1_48CDSP-littoralis_Contig15 115792..116229 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.2968457-UTR-P-littoralis_Contig15:116229..1162321680789710.2968457-UTR-P-littoralis_Contig15:116229..116232Pylaiella littoralis U1_48UTRP-littoralis_Contig15 116230..116232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.37.1prot_P-littoralis_Contig15.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 115792..116229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.37.1

>prot_P-littoralis_Contig15.37.1 ID=prot_P-littoralis_Contig15.37.1|Name=mRNA_P-littoralis_Contig15.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
MSGTVNIGSITVTSMSAGNISVGPYTFPSTEPVKGSVLVTDGTGNLSFSP
ANTRVEVSAAAHVVAASEDIVAITVAQDTALTLPDPATKVVGNILYVVKE
AAGAHVVTIAPSGAELISGQTSHVLSSEYGAAKLYTNGTDWFILT*
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mRNA from alignment at P-littoralis_Contig15:115792..116232-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.37.1 ID=mRNA_P-littoralis_Contig15.37.1|Name=mRNA_P-littoralis_Contig15.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig15:115792..116232- (Pylaiella littoralis U1_48)
CGAATGTCCGGGACCGTCAACATCGGATCCATCACCGTGACATCCATGTC
CGCCGGGAACATATCGGTGGGCCCGTACACGTTTCCCTCGACCGAGCCCG
TGAAGGGTTCCGTCCTGGTCACGGACGGCACCGGCAACCTGTCCTTCTCG
CCCGCGAACACGAGAGTCGAGGTGAGCGCGGCCGCGCACGTCGTCGCCGC
GAGCGAGGACATCGTGGCCATCACCGTCGCCCAGGACACCGCGCTGACGC
TCCCCGACCCGGCGACCAAGGTCGTGGGGAACATACTCTACGTGGTCAAA
GAGGCGGCGGGGGCGCACGTGGTGACGATCGCTCCGAGCGGGGCCGAGCT
CATCTCGGGGCAGACGTCACACGTGCTGTCGTCGGAGTACGGGGCGGCAA
AGCTGTACACGAACGGGACGGACTGGTTCATTCTGACCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:115792..116232-

>mRNA_P-littoralis_Contig15.37.1 ID=mRNA_P-littoralis_Contig15.37.1|Name=mRNA_P-littoralis_Contig15.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig15:115792..116232- (Pylaiella littoralis U1_48)
ATGTCCGGGACCGTCAACATCGGATCCATCACCGTGACATCCATGTCCGC
CGGGAACATATCGGTGGGCCCGTACACGTTTCCCTCGACCGAGCCCGTGA
AGGGTTCCGTCCTGGTCACGGACGGCACCGGCAACCTGTCCTTCTCGCCC
GCGAACACGAGAGTCGAGGTGAGCGCGGCCGCGCACGTCGTCGCCGCGAG
CGAGGACATCGTGGCCATCACCGTCGCCCAGGACACCGCGCTGACGCTCC
CCGACCCGGCGACCAAGGTCGTGGGGAACATACTCTACGTGGTCAAAGAG
GCGGCGGGGGCGCACGTGGTGACGATCGCTCCGAGCGGGGCCGAGCTCAT
CTCGGGGCAGACGTCACACGTGCTGTCGTCGGAGTACGGGGCGGCAAAGC
TGTACACGAACGGGACGGACTGGTTCATTCTGACCTGA
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