mRNA_P-littoralis_Contig15.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.29.1
Unique NamemRNA_P-littoralis_Contig15.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.29.1 vs. uniprot
Match: Q8QNE4_ESV1K (EsV-1-135 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNE4_ESV1K)

HSP 1 Score: 315 bits (806), Expect = 1.650e-97
Identity = 175/286 (61.19%), Postives = 202/286 (70.63%), Query Frame = 1 
Query:    1 MSSALVDAKSLCNDQILDALNYPMFAIFKIQHDQIADRVDSDNKLLYHFKQSMSKMGQWNKEIVHDFCAKLVKKFPGLKTCEMLVAEMITLTCKIMNEAHGSDERYKPVGFAFFDVLHAFIVECSTVFIEHPEWFSHGTDSTEYQTCVNNARIAMKNRGVVYNAVRKYVSLVDVAGVPNFSIPSASXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXSGDDGQDTGDDAAGAHGAVTKNIDVVTGDVYTAA---SCLQESMATHMSNGNLVHPG 849
            MSSALVDAK+LCNDQILD LN+PMF IF+IQHDQIA+RVDSDNKLLYHFKQSMSKM +WN  +VHDFC KLVKKFP +  CE L  EMI LT KIM+EAH SD RY PV FAF DVLH+FIVECS VFIEHPEWFSHG+DSTEYQTC+NNARIAMKNR VVYNA RKYV L +V   P+ S     XXXXXXXXXXXX                                   G ++G++    H  +TKNI+VVTGDV T A      QE+M+ H+S+G++++PG
Sbjct:    1 MSSALVDAKALCNDQILDVLNHPMFTIFQIQHDQIAERVDSDNKLLYHFKQSMSKMSEWNSSVVHDFCGKLVKKFPAISRCEALATEMIRLTSKIMDEAHDSDGRYVPVDFAFHDVLHSFIVECSKVFIEHPEWFSHGSDSTEYQTCLNNARIAMKNRDVVYNATRKYVMLTNVPASPSTSSXXXXXXXXXXXXXXXXARRSLIPESFAGAEPVSASGIYLTTENESESCAGGGDESGNEEVADHLEITKNINVVTGDVETVAVPSQTFQETMSNHLSSGHIMYPG 286
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BLAST of mRNA_P-littoralis_Contig15.29.1 vs. uniprot
Match: D8LPG1_ECTSI (EsV-1-135 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPG1_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.670e-93
Identity = 178/291 (61.17%), Postives = 205/291 (70.45%), Query Frame = 1 
Query:    1 MSSALVDAKSLCNDQILDALNYPMFAIFKIQHDQIADRVDSDNKLLYHFKQSMSKMGQWNKEIVHDFCAKLVKKFPGLKTCEMLVAEMITLTCKIMNEAHGSDERYKPVGFAFFDVLHAFIVECSTVFIEHPEWFSHGTDSTEYQTCVNNARIAMKNRGVVYNAVRKYVSLVDVAGVPNFSIPSASXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXS-----GDDGQDTGDDAAGAHGAVTKNIDVVTGDVYTAAS---CLQESMATHMSNGNLVHPG 849
            MSSALVDAK+LCNDQILD LN+PMF IF+IQHDQIA+RVDSDNKLLYHFKQSM+KM +WN  +VHDFC KLVKKFP +  CE L  EMI LT KIM+EAH SD RY PV FAF DVLH+FIVECS VFIEHPEWFSHGTDSTEYQTC+NNARIAMKNR VVYNA RKYV L +             XXXXXX         XXXXXXXXX +                 S     G DG  +G++    H  +TKNI+VVTGDV T A+     QE+M+ H+S+G++++PG
Sbjct:    1 MSSALVDAKALCNDQILDVLNHPMFTIFQIQHDQIAERVDSDNKLLYHFKQSMAKMSEWNSSVVHDFCGKLVKKFPAINRCEALATEMIRLTSKIMDEAHDSDGRYVPVDFAFHDVLHSFIVECSKVFIEHPEWFSHGTDSTEYQTCLNNARIAMKNRDVVYNATRKYVMLTNAPASXXXXXXXXXXXXXXXPSPSYSSSSXXXXXXXXXFASADPASASGIYLTTENDSQSCAGGGDG--SGNEEVADHLEITKNINVVTGDVETVAAPSQTFQENMSNHLSSGHIMYPG 289
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BLAST of mRNA_P-littoralis_Contig15.29.1 vs. uniprot
Match: Q6XM66_9PHYC (FirrV-1-A21 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM66_9PHYC)

HSP 1 Score: 75.9 bits (185), Expect = 1.020e-12
Identity = 47/135 (34.81%), Postives = 74/135 (54.81%), Query Frame = 1 
Query:    4 SSALVDAKSLCNDQILDALNYPMFAIFKIQHDQIADRVDSDNKLLYHFKQSMSKMGQWNKEIVHDFCAKLVKKFP--GLKTCEMLVAEMITLTCKIMNEAHGSDERYKPVGFAFFDVLHAFIVECSTVFIEHPEW 402
            SSAL++AK+L   ++ + L  P++ +F +Q+ QIA+R ++ N L+YH + SMS + QWN   + DF   LV +FP   L+  +  V  +  LTC I+N +  S      V       LHA +   S   ++H EW
Sbjct:    3 SSALIEAKTLSALKLYELLIDPLYDVFCMQYRQIANRTETTNSLVYHIRNSMSGIRQWNALTIRDFFNNLVVQFPQLDLEFTKQFV-HLQELTCNILNSSSASLVHTPSVSDRN-SFLHATLSGASNALLDHREW 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNE4_ESV1K1.650e-9761.19EsV-1-135 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPG1_ECTSI1.670e-9361.17EsV-1-135 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q6XM66_9PHYC1.020e-1234.81FirrV-1-A21 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:105750..107570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1578
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionEsV-1-135
Ec32 orthologEc-06_005500.1
Cds size1578
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.9891295-CDS-P-littoralis_Contig15:105749..1063561680789709.9891295-CDS-P-littoralis_Contig15:105749..106356Pylaiella littoralis U1_48CDSP-littoralis_Contig15 105750..106356 +
1680789710.0012748-CDS-P-littoralis_Contig15:106512..1066881680789710.0012748-CDS-P-littoralis_Contig15:106512..106688Pylaiella littoralis U1_48CDSP-littoralis_Contig15 106513..106688 +
1680789710.012649-CDS-P-littoralis_Contig15:106775..1075701680789710.012649-CDS-P-littoralis_Contig15:106775..107570Pylaiella littoralis U1_48CDSP-littoralis_Contig15 106776..107570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.29.1prot_P-littoralis_Contig15.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 105750..107570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.29.1

>prot_P-littoralis_Contig15.29.1 ID=prot_P-littoralis_Contig15.29.1|Name=mRNA_P-littoralis_Contig15.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=526bp
MSSALVDAKSLCNDQILDALNYPMFAIFKIQHDQIADRVDSDNKLLYHFK
QSMSKMGQWNKEIVHDFCAKLVKKFPGLKTCEMLVAEMITLTCKIMNEAH
GSDERYKPVGFAFFDVLHAFIVECSTVFIEHPEWFSHGTDSTEYQTCVNN
ARIAMKNRGVVYNAVRKYVSLVDVAGVPNFSIPSASSSSASSASSASPPP
SPGTGGTGGTGSGSGSGSGSDSDADSESESGDDGQDTGDDAAGAHGAVTK
NIDVVTGDVYTAASCLQESMATHMSNGNLVHPGMSTGFGPAGVGFGFGFG
PPGPYPRGNVFAESLGRRGVGYDRVDIVKPDSSEVGSDVVDFILDAGGAD
FGSDSGSDSGSDSGSDSGSDSGSDSGSDSGSDFGSDSGSDFGSGSGSGSG
SGSDFGSGSDSGSGSGSGSDFGSGSDFDSDSGSGSGSDSDFDSELESDTD
FDYFESDGSESETCGSEEASSSDAGSAAEFESETDPETGSESGSESGSES
GSESGSESGSESGSGSERFASDGTE*
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mRNA from alignment at P-littoralis_Contig15:105750..107570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.29.1 ID=mRNA_P-littoralis_Contig15.29.1|Name=mRNA_P-littoralis_Contig15.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1821bp|location=Sequence derived from alignment at P-littoralis_Contig15:105750..107570+ (Pylaiella littoralis U1_48)
ATGTCGTCCGCCCTCGTCGACGCGAAGTCGCTCTGCAACGACCAGATACT
CGATGCCCTGAACTACCCCATGTTTGCCATCTTCAAGATACAGCACGACC
AGATCGCGGACAGGGTCGACTCCGACAACAAGCTTCTGTACCACTTCAAG
CAGAGCATGTCGAAGATGGGCCAGTGGAACAAGGAGATCGTGCACGACTT
CTGCGCGAAACTTGTCAAGAAGTTCCCGGGGCTCAAGACCTGTGAAATGC
TCGTGGCGGAGATGATAACGCTGACCTGCAAGATCATGAACGAGGCACAC
GGCTCGGACGAGCGGTACAAACCTGTCGGGTTCGCGTTTTTTGACGTCCT
CCACGCCTTCATCGTTGAGTGCAGCACCGTGTTCATCGAGCACCCCGAAT
GGTTTTCGCACGGCACCGACTCCACGGAGTACCAGACCTGTGTCAACAAC
GCCCGAATCGCCATGAAGAATAGGGGTGTCGTGTACAACGCCGTCCGTAA
ATACGTGTCCCTGGTGGACGTTGCAGGGGTTCCGAACTTCTCGATCCCGT
CGGCGTCATCGTCGTCGGCGTCGTCGGCGTCGTCGGCGTCACCGCCGCCG
TCGCCCGGTCCTTCCCCGGGCGCAGAGTCTCCTCTGCAGTTCATTATAGA
CGACCCGGCCTCGGGCTCCGGGATGTACGTGACCGGAGGCACCGGAGGCA
CCGGAGGCACCGGAGGCACTGGAGGCACCGGAGGCACCGGCGGCACCGGC
GGCACCGGCGGAGGCACCGGCGGCACCGGCGGCACCGGCTCGGGCTCGGG
TTCGGGCTCGGGCTCGGACTCGGACGCGGACTCGGAATCGGAATCGGGAG
ACGATGGCCAGGACACCGGCGACGATGCCGCTGGCGCCCACGGGGCCGTC
ACGAAGAACATCGATGTCGTCACGGGCGACGTCTACACGGTGCCGGCCCC
CGCGCCCCCCTCGGCCCCCGCGCCCGCCGCGCCCGCCGCGCCCGCCGCGC
CCGCCGTGATCCCCGCGATCCCCGAGGCGGCTTCGTGCCTGCAGGAGTCC
ATGGCGACCCACATGTCCAACGGAAACCTCGTGCACCCCGGTATGTCCAC
CGGCTTCGGCCCCGCGGGCGTGGGCTTCGGCTTCGGCTTCGGCCCACCCG
GGCCGTACCCTCGCGGGAACGTCTTCGCGGAAAGCCTTGGGCGTCGGGGC
GTGGGTTACGATCGCGTGGACATCGTCAAGCCGGACAGCTCGGAGGTCGG
TTCGGATGTGGTTGACTTCATCCTCGATGCCGGTGGTGCCGATTTCGGCT
CCGATTCCGGCTCCGATTCCGGCTCCGATTCCGGCTCCGATTCCGGCTCC
GATTCCGGCTCCGATTCCGGCTCCGATTCCGGCTCCGATTTCGGCTCCGA
TTCCGGCTCCGATTTCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGGT
CCGATTTCGGCTCCGGGTCCGATTCCGGCTCCGGCTCCGGGTCCGGGTCC
GATTTCGGCTCCGGGTCCGATTTCGATTCTGATTCCGGGTCCGGGTCCGG
GTCCGATTCCGATTTCGATTCTGAATTAGAAAGTGATACCGATTTCGACT
ACTTCGAGTCTGATGGCAGCGAGTCCGAGACATGTGGATCGGAGGAAGCG
TCGTCTTCCGATGCGGGATCGGCAGCGGAGTTCGAGTCGGAGACGGACCC
GGAGACGGGATCCGAGTCGGGATCCGAGTCGGGATCCGAGTCGGGATCCG
AATCGGGATCCGAGTCGGGATCCGAGTCGGGATCGGGATCGGAGCGTTTT
GCGTCCGATGGAACTGAGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:105750..107570+

>mRNA_P-littoralis_Contig15.29.1 ID=mRNA_P-littoralis_Contig15.29.1|Name=mRNA_P-littoralis_Contig15.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1578bp|location=Sequence derived from alignment at P-littoralis_Contig15:105750..107570+ (Pylaiella littoralis U1_48)
ATGTCGTCCGCCCTCGTCGACGCGAAGTCGCTCTGCAACGACCAGATACT
CGATGCCCTGAACTACCCCATGTTTGCCATCTTCAAGATACAGCACGACC
AGATCGCGGACAGGGTCGACTCCGACAACAAGCTTCTGTACCACTTCAAG
CAGAGCATGTCGAAGATGGGCCAGTGGAACAAGGAGATCGTGCACGACTT
CTGCGCGAAACTTGTCAAGAAGTTCCCGGGGCTCAAGACCTGTGAAATGC
TCGTGGCGGAGATGATAACGCTGACCTGCAAGATCATGAACGAGGCACAC
GGCTCGGACGAGCGGTACAAACCTGTCGGGTTCGCGTTTTTTGACGTCCT
CCACGCCTTCATCGTTGAGTGCAGCACCGTGTTCATCGAGCACCCCGAAT
GGTTTTCGCACGGCACCGACTCCACGGAGTACCAGACCTGTGTCAACAAC
GCCCGAATCGCCATGAAGAATAGGGGTGTCGTGTACAACGCCGTCCGTAA
ATACGTGTCCCTGGTGGACGTTGCAGGGGTTCCGAACTTCTCGATCCCGT
CGGCGTCATCGTCGTCGGCGTCGTCGGCGTCGTCGGCGTCACCGCCGCCG
TCGCCCGGCACCGGCGGCACCGGCGGCACCGGCTCGGGCTCGGGTTCGGG
CTCGGGCTCGGACTCGGACGCGGACTCGGAATCGGAATCGGGAGACGATG
GCCAGGACACCGGCGACGATGCCGCTGGCGCCCACGGGGCCGTCACGAAG
AACATCGATGTCGTCACGGGCGACGTCTACACGGCGGCTTCGTGCCTGCA
GGAGTCCATGGCGACCCACATGTCCAACGGAAACCTCGTGCACCCCGGTA
TGTCCACCGGCTTCGGCCCCGCGGGCGTGGGCTTCGGCTTCGGCTTCGGC
CCACCCGGGCCGTACCCTCGCGGGAACGTCTTCGCGGAAAGCCTTGGGCG
TCGGGGCGTGGGTTACGATCGCGTGGACATCGTCAAGCCGGACAGCTCGG
AGGTCGGTTCGGATGTGGTTGACTTCATCCTCGATGCCGGTGGTGCCGAT
TTCGGCTCCGATTCCGGCTCCGATTCCGGCTCCGATTCCGGCTCCGATTC
CGGCTCCGATTCCGGCTCCGATTCCGGCTCCGATTCCGGCTCCGATTTCG
GCTCCGATTCCGGCTCCGATTTCGGCTCCGGCTCCGGCTCCGGCTCCGGC
TCCGGGTCCGATTTCGGCTCCGGGTCCGATTCCGGCTCCGGCTCCGGGTC
CGGGTCCGATTTCGGCTCCGGGTCCGATTTCGATTCTGATTCCGGGTCCG
GGTCCGGGTCCGATTCCGATTTCGATTCTGAATTAGAAAGTGATACCGAT
TTCGACTACTTCGAGTCTGATGGCAGCGAGTCCGAGACATGTGGATCGGA
GGAAGCGTCGTCTTCCGATGCGGGATCGGCAGCGGAGTTCGAGTCGGAGA
CGGACCCGGAGACGGGATCCGAGTCGGGATCCGAGTCGGGATCCGAGTCG
GGATCCGAATCGGGATCCGAGTCGGGATCCGAGTCGGGATCGGGATCGGA
GCGTTTTGCGTCCGATGGAACTGAGTAA
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