mRNA_P-littoralis_Contig15.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.25.1
Unique NamemRNA_P-littoralis_Contig15.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 7.470e-88
Identity = 140/253 (55.34%), Postives = 161/253 (63.64%), Query Frame = 1
Query:   25 VGQGRTS--WVSPNPRANPTDYDKDFPWFWIDLETTGLDTDTNLILEIVIVVTDRDLKEMDSMRLVLHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHYSEDAGRRHDT-----------------------------------------------------------------------VVDVSTPLEMVRRWRPDLARRIPCRNGAHRAYDDIRDSISLMKFFKITLLS 564
            +G+GR +  +VS + + +  DY+ +FPWFWID+ETTGLDTDTNLILEIV+VVTDRDL E+DSMRLVLHHPHSIL+ARSSAWCR+KFCHR EGGNGLF  CH SALSHHEAEYRMWNFFDHYS+D G R+DT                                                                       VVDVSTPLEMVRRWRPD+A ++P RNG+HRAYDDI DSISLMKFFK T L+
Sbjct:   16 IGKGRRNKTFVSRDFKTSKHDYENEFPWFWIDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRLVLHHPHSILLARSSAWCRRKFCHRREGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKDVGGRYDTTQITSSQPFFDRTLGANGTFLGASDASRCRHQQQPRRSNYKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKFFKETFLN 268          
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: B5LWG6_9PHYC (Putative oligoribonuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG6_9PHYC)

HSP 1 Score: 127 bits (320), Expect = 3.980e-33
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 1
Query:   82 YDKDFPWFWIDLETTGLDTDTNLILEIVIVVTDRDLKEMDSMRLVLHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHYS 384
            YD++ PWFWID+ET+ LD  T+ +LEI IVVTD  L   DS+ +V+HHP +ILM +SS WC++KFC RS GGNGLF DCH S  S  +A + M NFF++YS
Sbjct:   17 YDRNNPWFWIDIETSSLDFSTSDVLEIAIVVTDSGLNVWDSLHVVIHHPINILMLKSSNWCKEKFCSRSYGGNGLFDDCHYSNTSITDATHLMLNFFEYYS 117          
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: A0A7M7JVU5_VARDE (Exonuclease domain-containing protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7JVU5_VARDE)

HSP 1 Score: 100 bits (249), Expect = 1.150e-22
Identity = 68/200 (34.00%), Postives = 104/200 (52.00%), Query Frame = 1
Query:   34 GRTSWVSPNPRANPTDYDKDFPWFWIDLETTGLDTDTNLILEIVIVVTDRDLKEMDSM-RLVLHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHY-----------SEDAGRR-------------HDTVVDVSTPLEMVRRWRPDLARRIPCRNGAHRAYDDIRDSISLMKFFKITL 558
            G  ++ +PN +  P+D D+     WID+E TGLD D + I+EI  VVTD+DL E+  + +++LH P  +L A    WC++     + G +GL   C  S +S  EAE  +  F   +           S  A R+             H  ++DVS+  E+ +RW PD++   P    AHRAY+DIR SI  +++F+ TL
Sbjct:   50 GPMNFNTPNDKIMPSDIDQRI--CWIDMEMTGLDPDRDTIMEISCVVTDKDLNEVARIEQIILHQPEYVLNAMDD-WCKQ-----NHGASGLTEACLKSKISLKEAEDTVLVFLQRHTTPKKVPLGGNSVHADRQFIRRYMPKVYEHLHYRIIDVSSIRELCKRWYPDVSENEPKIKKAHRAYEDIRQSIQQLQYFRKTL 241          
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: UPI00035A2ADF (probable oligoribonuclease isoform X1 n=3 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A2ADF)

HSP 1 Score: 98.6 bits (244), Expect = 1.430e-21
Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  106 WIDLETTGLDTDTNLILEIVIVVTDRDLKEM-DSMRLVLHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHYSED------------------------AGRRHDTVVDVSTPLEMVRRWRPDLARRIPCRNGAHRAYDDIRDSISLMKFFKI 552
            WIDLE TGLD D++ ILEI  +VT+ DL  + +   L++H  + +L      WC ++      G +GL      S +S H+AE ++  F   ++                          A   H  +VDVST  E+ RRW P+L +R+P +N +HRA DDIR+SI  +KF+K+
Sbjct:  116 WIDLEMTGLDVDSDTILEIACIVTEGDLALVAEGPSLIIHQENEVL-ENMGEWCTEQ-----HGKSGLTESVRNSKISLHQAEEQVLEFVKQHTPSGVCPIAGNSVGKDKQFLERYMPRLASHFHYRIVDVSTIKELCRRWYPNLEKRLPSKNLSHRALDDIRESIEELKFYKM 283          
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: A0A3P7PK89_9BILA (Exonuclease domain-containing protein n=3 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A3P7PK89_9BILA)

HSP 1 Score: 94.0 bits (232), Expect = 5.770e-21
Identity = 52/149 (34.90%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  106 WIDLETTGLDTDTNLILEIVIVVTDRDLKEM-DSMRLVLHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHYSEDAGRRHDTVVDVSTPLEMVRRWRPDLARRIPCRNGAHRAYDDIRDSISLMKFFK 549
            W+D E TGLD +T  I+E+  VVT+ DL  + D + +V+ HP ++L +  S WC+K F       NGL  +   S +S  +AE   +         A   H   +DVS+  E+ +RW PD+  + P +  AHRA DDI +SI  +++++
Sbjct:   17 WVDCEMTGLDVNTKTIVEVACVVTEADLTVVEDGLNVVISHPENVLQSMDS-WCKKTFA-----ANGLLKEIQASEISLEQAEQEKY-----MPTFASHLHYRTIDVSSIKELAKRWYPDIYAKRPRKAEAHRALDDICESIEELQWYR 154          
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: A0A482V8A7_9CUCU (Oligoribonuclease n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482V8A7_9CUCU)

HSP 1 Score: 94.0 bits (232), Expect = 3.000e-20
Identity = 59/175 (33.71%), Postives = 90/175 (51.43%), Query Frame = 1
Query:  106 WIDLETTGLDTDTNLILEIVIVVTDRDLKEM-DSMRLVLHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHYSED-----AGRR-------------------HDTVVDVSTPLEMVRRWRPDLARRIPCRNGAHRAYDDIRDSISLMKFFKIT 555
            W+D+E TGLD  T+ I+E+  +VTD +L  + +   +V+HHP ++L    S WC+K+         GL   C  S ++ +EAE ++  F   Y  +     AG                     H  ++DVST  E+ RRW P+L R IP +  +HRA  DIR+SI  +K++K T
Sbjct:   61 WVDMEMTGLDIQTDKIMEVACIVTDSNLNIIAEGPNIVIHHPRNVL-DNMSEWCKKQ-----HAKTGLTEACLNSNVTLNEAENKLMAFVTKYVTENVSPLAGNSVYMDRLFLRKYMPRLDEYLHYRIIDVSTIKELCRRWNPNLYRDIPKKEFSHRALADIRESIDELKYYKNT 229          
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: A0A1Y1R7A4_9GAMM (Oligoribonuclease n=2 Tax=Oceanospirillales TaxID=135619 RepID=A0A1Y1R7A4_9GAMM)

HSP 1 Score: 88.2 bits (217), Expect = 1.540e-18
Identity = 60/173 (34.68%), Postives = 87/173 (50.29%), Query Frame = 1
Query:  106 WIDLETTGLDTDTNLILEIVIVVTDRDLKEMDSMRLV-LHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHY-----------SEDAGRR-------------HDTVVDVSTPLEMVRRWRPDLARRIPCRNGAHRAYDDIRDSISLMKFFK 549
            WIDLE TGL+ DT+ ILE   ++TD +L E+    ++ +H P S+L A    WC K     + G  GL      S +S  EAE +  +F   Y           S    RR             H   +DVST  E+ RRWRPD+   +  + G+H+A DDIR+SI+ M++++
Sbjct:    9 WIDLEMTGLNPDTDRILEFATIITDGELNELAVGPVIAVHQPDSVLNAMDD-WCIK-----THGQTGLTDRVRKSTISEQEAEKQTLDFIRQYVDPRVSPMCGNSIGQDRRFLHRFMRDLHDYFHYRNIDVSTVKELARRWRPDVFNGV-VKAGSHKALDDIRESIAEMRYYR 174          
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: A0A0H5R6R7_9EUKA (Exonuclease domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R6R7_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 2.450e-18
Identity = 60/181 (33.15%), Postives = 86/181 (47.51%), Query Frame = 1
Query:   97 PWFWIDLETTGLDTDTNLILEIVIVVTDRDLKEM-DSMRLVLHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHYSEDAGRR-------------------------HDTVVDVSTPLEMVRRWRPDLARRIPCRNGAHRAYDDIRDSISLMKFFKITLL 561
            P  WID E TGLD +++ ILEI +V+TD DL  + +   LV+HH   +L A    WC     H  E  +GL      S L+   AE  + +F   ++   G+                          H  ++DVS+  E+ RRW P +  R P +   HRA DDIR+SI  +K++K  LL
Sbjct:   46 PMIWIDCEMTGLDIESDTILEIAVVMTDSDLNRVIEGPDLVIHHSDKVLNAMGE-WC---ITHHGE--SGLTDKVRASTLTMTAAEDEIMSFVTKWATKPGQTPLAGNTVHCDRMFLKKFMPRLDQYMHYRIIDVSSFKEICRRWNPGVFSRAPKKALLHRALDDIRESIEELKYYKAHLL 220          
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: A0A0V0R1R0_PSEPJ (Ribonuclease H-like domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R1R0_PSEPJ)

HSP 1 Score: 87.0 bits (214), Expect = 4.780e-18
Identity = 56/176 (31.82%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   97 PWFWIDLETTGLDTDTNLILEIVIVVTDRDLKEMDSMRLVLHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHY------------SEDAGRR-------------HDTVVDVSTPLEMVRRWRPDLARRIPCRNGAHRAYDDIRDSISLMKFFK 549
            P  W+DLE TGLD +TN I+EI ++VTD +L++      ++      ++ +  AWC K     + G +GL   C  S +S  +AE ++ +F  +             S    RR             H  ++DVST  E+ RRW P+   + P +   HRA DDI +SI  +KF+K
Sbjct:   10 PIVWVDLEMTGLDHNTNQIMEIAVLVTDGNLEQTIEGPEIIVKAEKQVLEKMDAWCTK-----THGESGLTQKCLESKISIEQAEKQVLDFLKNLNINKFEAQLGGNSVHMDRRFINKYMPQLDDFLHYRIIDVSTIKELARRWYPEEMEKKPVKKLCHRALDDIIESIEELKFYK 180          
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Match: A0A0M3IY33_ANISI (Probable oligoribonuclease (inferred by orthology to a C. elegans protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3IY33_ANISI)

HSP 1 Score: 87.4 bits (215), Expect = 6.220e-18
Identity = 59/180 (32.78%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  106 WIDLETTGLDTDTNLILEIVIVVTDRDLKEM-DSMRLVLHHPHSILMARSSAWCRKKFCHRSEGGNGLFGDCHLSALSHHEAEYRMWNFFDHYSEDAGRR-------------------------HDTVVDVSTPLEMVRRWRPDLARRIPCRNGAHRAYDDIRDSISLMKFFKITLLSC 567
            WID E TGLD + N I+EI  +VT+ DL  + +   LV++ P  +L +  S WC+  F       NGL      S ++   AE ++  F   ++E AG+                          H   VDVST  E+V+RW P     IP +  AHRA DDI++SI  +K++K  +  C
Sbjct:   37 WIDCEMTGLDVNVNRIVEIACIVTEADLSIVSEGPDLVINQPEDVL-SNMSDWCKTTF-----KMNGLTERIRASNINTENAESQVLTFLKRHTE-AGQSVLAGNSVYMDRIFINKYMPNLGAHLHYRTVDVSTVKELVKRWNPLAYTLIPRKKNAHRALDDIKESIEELKWYKANIFKC 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPG5_ECTSI7.470e-8855.34EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI[more]
B5LWG6_9PHYC3.980e-3357.43Putative oligoribonuclease n=1 Tax=Feldmannia spec... [more]
A0A7M7JVU5_VARDE1.150e-2234.00Exonuclease domain-containing protein n=1 Tax=Varr... [more]
UPI00035A2ADF1.430e-2134.48probable oligoribonuclease isoform X1 n=3 Tax=Aply... [more]
A0A3P7PK89_9BILA5.770e-2134.90Exonuclease domain-containing protein n=3 Tax=Gong... [more]
A0A482V8A7_9CUCU3.000e-2033.71Oligoribonuclease n=1 Tax=Asbolus verrucosus TaxID... [more]
A0A1Y1R7A4_9GAMM1.540e-1834.68Oligoribonuclease n=2 Tax=Oceanospirillales TaxID=... [more]
A0A0H5R6R7_9EUKA2.450e-1833.15Exonuclease domain-containing protein (Fragment) n... [more]
A0A0V0R1R0_PSEPJ4.780e-1831.82Ribonuclease H-like domain n=1 Tax=Pseudocohnilemb... [more]
A0A0M3IY33_ANISI6.220e-1832.78Probable oligoribonuclease (inferred by orthology ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:102553..103326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog654926.Q8QNE0_ESV1K
Model size570
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.37e-90
EggNOG OGs4QARC@10239|Viruses
Ec32 ortholog descriptionEsV-1-139 putative oligoribonuclease
Ec32 orthologEc-06_005460.1
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.8397706-CDS-P-littoralis_Contig15:102552..1029621680789709.8397706-CDS-P-littoralis_Contig15:102552..102962Pylaiella littoralis U1_48CDSP-littoralis_Contig15 102553..102962 +
1680789709.852753-CDS-P-littoralis_Contig15:103166..1033261680789709.852753-CDS-P-littoralis_Contig15:103166..103326Pylaiella littoralis U1_48CDSP-littoralis_Contig15 103167..103326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.25.1prot_P-littoralis_Contig15.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 102553..103326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.25.1

>prot_P-littoralis_Contig15.25.1 ID=prot_P-littoralis_Contig15.25.1|Name=mRNA_P-littoralis_Contig15.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp
MGTGQGPEVGQGRTSWVSPNPRANPTDYDKDFPWFWIDLETTGLDTDTNL
ILEIVIVVTDRDLKEMDSMRLVLHHPHSILMARSSAWCRKKFCHRSEGGN
GLFGDCHLSALSHHEAEYRMWNFFDHYSEDAGRRHDTVVDVSTPLEMVRR
WRPDLARRIPCRNGAHRAYDDIRDSISLMKFFKITLLSC*
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mRNA from alignment at P-littoralis_Contig15:102553..103326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.25.1 ID=mRNA_P-littoralis_Contig15.25.1|Name=mRNA_P-littoralis_Contig15.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig15:102553..103326+ (Pylaiella littoralis U1_48)
ATGGGGACCGGGCAGGGGCCGGAGGTCGGCCAGGGGCGCACCTCGTGGGT TTCCCCGAACCCCCGGGCGAATCCAACCGACTACGACAAGGACTTCCCGT GGTTCTGGATCGATCTCGAAACGACAGGCCTGGACACGGACACGAACTTG ATCCTTGAGATTGTGATTGTCGTCACCGATCGAGACCTGAAGGAGATGGA TTCCATGCGGCTGGTTCTGCACCACCCGCACTCCATCCTCATGGCTCGTT CCAGCGCCTGGTGCAGGAAAAAGTTCTGCCATCGCAGCGAGGGTGGCAAC GGCCTCTTCGGCGACTGCCACCTCAGCGCCCTCAGTCACCACGAGGCCGA GTACAGGATGTGGAATTTCTTTGACCACTACTCCGAAGACGCGGGCAGGA GGCACGACACGTCACTCCTGTCGTCGAGCCAGCCCTTCTTCCAGAGGACG CGGGGTGCCAACGGGACTTTCATCGGTTCCGCGGAGGTCGTGCGCCCCCA GCACCCTCGGCGCCGCAACTACAAGAAGTGTCTGCTGGCGGGATCGACGG TTTACTTCGACCGCCTGTTCCTGCTGAAGTACTTCCCCTGTCTGAAGACG TTCTTCCATCACAGGGTCGTCGACGTCTCCACGCCGCTCGAGATGGTGCG CCGCTGGAGGCCCGACCTTGCGAGGAGGATTCCGTGCCGGAACGGAGCGC ATCGAGCCTACGACGACATCCGGGACTCCATATCCCTGATGAAATTCTTC AAAATCACGCTCTTGTCTTGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:102553..103326+

>mRNA_P-littoralis_Contig15.25.1 ID=mRNA_P-littoralis_Contig15.25.1|Name=mRNA_P-littoralis_Contig15.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig15:102553..103326+ (Pylaiella littoralis U1_48)
ATGGGGACCGGGCAGGGGCCGGAGGTCGGCCAGGGGCGCACCTCGTGGGT
TTCCCCGAACCCCCGGGCGAATCCAACCGACTACGACAAGGACTTCCCGT
GGTTCTGGATCGATCTCGAAACGACAGGCCTGGACACGGACACGAACTTG
ATCCTTGAGATTGTGATTGTCGTCACCGATCGAGACCTGAAGGAGATGGA
TTCCATGCGGCTGGTTCTGCACCACCCGCACTCCATCCTCATGGCTCGTT
CCAGCGCCTGGTGCAGGAAAAAGTTCTGCCATCGCAGCGAGGGTGGCAAC
GGCCTCTTCGGCGACTGCCACCTCAGCGCCCTCAGTCACCACGAGGCCGA
GTACAGGATGTGGAATTTCTTTGACCACTACTCCGAAGACGCGGGCAGGA
GGCACGACACGGTCGTCGACGTCTCCACGCCGCTCGAGATGGTGCGCCGC
TGGAGGCCCGACCTTGCGAGGAGGATTCCGTGCCGGAACGGAGCGCATCG
AGCCTACGACGACATCCGGGACTCCATATCCCTGATGAAATTCTTCAAAA
TCACGCTCTTGTCTTGTTGA
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