mRNA_P-littoralis_Contig15.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.3.1
Unique NamemRNA_P-littoralis_Contig15.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI)

HSP 1 Score: 647 bits (1669), Expect = 1.530e-233
Identity = 324/342 (94.74%), Postives = 330/342 (96.49%), Query Frame = 1
Query:   19 LRTSSLFYMLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVVYASRWRVEESFKR*KSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHSEADVFSKKRSRLCHGRIYDHHRHGPIFSDKLT 1044
            L TSSLFY LTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGY+TRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLR VRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFK T+PFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKV+YASRWRVEES KR KSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKS+KEPSYIYTLDTYVTHILNNVKRVSNPVKLSAH E +V SKKRSR  HGRIYDHHRHGP FSD+LT
Sbjct:   27 LDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYVTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRCVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTRPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESLKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSIKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHCETNVLSKKRSRF-HGRIYDHHRHGPFFSDELT 367          
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI)

HSP 1 Score: 557 bits (1435), Expect = 5.580e-198
Identity = 279/317 (88.01%), Postives = 292/317 (92.11%), Query Frame = 1
Query:   19 LRTSSLFYMLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVVYASRWRVEESFKR*KSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHSEADVFSK 969
            L TSSLFY LTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKI+AFK T+ FFNSC TEA CLILG+ ARLLKYFI GKTYVCLTND SLSRRDIK +YASRWRVEESFKR KSNL+LEKAHA+TP LYIQEVEARVLLDTITLR+Q S KE SY+YTLDT+VT+IL NVKRVS P +      AD+ +K
Sbjct:   27 LDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTITLRMQGSTKESSYLYTLDTHVTYILRNVKRVSGPSRYKCPGVADLKAK 343          
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 525 bits (1353), Expect = 7.940e-180
Identity = 266/344 (77.33%), Postives = 293/344 (85.17%), Query Frame = 1
Query:   25 TSSLFYMLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVVYASRWRVEESFKR*KSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHSEADVFSKKRSRLCHGR------IYDHHRHGPIFSDK 1038
            TSSLF+ LT+CC+Q RGV+H+L+ME+E YSSQA+HSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFI +GY TRTN++PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AAT MLR VRKGDTL+FDRGYYSK+LLRSVHDSHAFGVWRLKI+AFK T+ FFNSC TEA CLILG+ ARLLKYFI GKTYVCLTND SLSRRDIK +YASRWRVEESFKR KSNLKLEKAHAKTPALYIQEVEARVLLDTITLR+Q S KE SY+YTLDT+VTHIL NVKRVS+P +      A++ SK      H R      I D  R    FSD+
Sbjct:   44 TSSLFFTLTRCCVQGRGVSHVLKMEDEAYSSQAVHSARKKLPIGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINSGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVRKGDTLLFDRGYYSKDLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRMQSSTKESSYLYTLDTHVTHILRNVKRVSSPTRYKFLRVAELESKTPFGRMHYRPSDTDIIIDFARREKDFSDR 387          
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K)

HSP 1 Score: 506 bits (1304), Expect = 1.020e-177
Identity = 251/315 (79.68%), Postives = 279/315 (88.57%), Query Frame = 1
Query:   25 TSSLFYMLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVVYASRWRVEESFKR*KSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHSEADVFSK 969
            TSSLFY LT+CC+Q RGV H+L+ME+E YSSQA+HSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFI AGY TRTN++PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AAT MLR V+KGDTL+FDRGYYSK+LL SVH SHAFGVWRLKI+AF+ T+ FFNSC TEATCLILGV+ARLLKYFI GKTYVCLT D SLSR  IK +YASRWRVEESFKR KSNL+LEKAHA+TP LYIQEVEARVLLDTITLR+Q S KE SY+YTLDT+VT+IL NVKRVS+P +      AD+ +K
Sbjct:   29 TSSLFYTLTRCCVQGRGVNHVLKMEDEAYSSQAVHSARKKLPMGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINAGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVQKGDTLLFDRGYYSKDLLHSVHGSHAFGVWRLKIDAFRGTRSFFNSCRTEATCLILGVKARLLKYFIDGKTYVCLTTDPSLSRLKIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTITLRMQGSTKESSYLYTLDTHVTYILRNVKRVSSPSRYKCLGVADLKAK 343          
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 468 bits (1204), Expect = 8.960e-157
Identity = 236/301 (78.41%), Postives = 259/301 (86.05%), Query Frame = 1
Query:   19 LRTSSLFYMLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVVYASRWRVEESFKR*KSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVS 921
            L TSS+FY +TKCC +ERGV+H+L+ME E+YSSQA+H ARKKLP GAFKEVNRFL RGPHEPR+FA+DGSKVHVHPSFI AGY TRTN+KPVPRPAKRPLVMLSSMVDV+TK+C+DFELTKHF+ER+AA  MLR VRK DTL+FDRGYYSK+LLRSVHDS AFGVWRL+I                  CLILGVR RLLKYFI GKTYVCLTND SLSRRDIK +YA RWRVEESFKR KSNLKLEKAHAKTPALYIQEVEARVLLDTITLR+Q S KE SY+YTLDT+VTHIL NVKRVS
Sbjct:   27 LDTSSVFYTITKCCTRERGVSHVLKMEAEEYSSQAVHLARKKLPIGAFKEVNRFLHRGPHEPRIFAIDGSKVHVHPSFIKAGYKTRTNDKPVPRPAKRPLVMLSSMVDVRTKSCIDFELTKHFDERRAAVSMLRSVRKSDTLLFDRGYYSKDLLRSVHDSGAFGVWRLRI----------------MPCLILGVRVRLLKYFIKGKTYVCLTNDPSLSRRDIKTMYAWRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRMQSSTKESSYLYTLDTHVTHILRNVKRVS 311          
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 8.730e-121
Identity = 189/250 (75.60%), Postives = 205/250 (82.00%), Query Frame = 1
Query:   94 MENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVVYASRWRVEESFKR*KSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQK 843
            M NEQYSSQAIH ARKKLP GAFKEVNRFL +GPHEPRVFAVDGSKVHVHPSFIGAGY TRTN+KPVPRPAK PLVMLSSMVDVKTKACVDFELTKHFNE  +                 R Y  K  LRS+HDS AFGVWRLKINAFK TK F +S  TE TCLILGV++RL+KY I+GKTYVCLTND +LSRRDIK +YASRWR E+S  R KSN++LEKAHA+TP LYIQEVEARVLLDTITLRLQ+
Sbjct:    1 MGNEQYSSQAIHLARKKLPVGAFKEVNRFLHQGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKSPLVMLSSMVDVKTKACVDFELTKHFNEDGS-----------------RIYTQK--LRSIHDSQAFGVWRLKINAFKGTKSFISSWRTETTCLILGVQSRLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWRGEQSL-RLKSNVRLEKAHARTPDLYIQEVEARVLLDTITLRLQR 230          
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.200e-37
Identity = 88/161 (54.66%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   25 TSSLFYMLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAF 507
            TSSLFY LTK CIQERGV HILR ++EQYSSQA+HSARKKLP GAFKE                                        PVPRPA RPLVMLSSMVD           TK FNERKA   MLR V +GDTLVFD+ YYS+ LLR+VHDS AF
Sbjct:  183 TSSLFYTLTKRCIQERGVGHILRTDDEQYSSQAVHSARKKLPAGAFKE----------------------------------------PVPRPATRPLVMLSSMVD-----------TKLFNERKADVSMLRSVHQGDTLVFDKEYYSRGLLRNVHDSKAF 292          
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: A0A2Z2NHE4_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NHE4_9GAMM)

HSP 1 Score: 110 bits (274), Expect = 8.780e-23
Identity = 84/268 (31.34%), Postives = 128/268 (47.76%), Query Frame = 1
Query:  112 SSQAIHSARKKLPPGAFKEVN-RFLQRGPHEP-------RVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLIL-------------------GVRARLLKYFISGKTYVC---LTNDLSLSRRDIKVVYASRWRVEESFKR*KSNLKLEKAHAKTPALYIQEVEARVLLDTI 825
            ++ A  +AR KL    FK +  + LQ+   +P       R+ AVDGSK+++    I AGY T ++N      A  P   +S + ++KTK  +DF+L  H +ERK A   L  + + D +V+DRGYYS ++L      H   ++RLK  A +  + F NS   +A   I                     +  RL+KY   G +Y+    L +    S   +  VY SRW VEE +K  K  +K+E  HA++     QE+ A   L T+
Sbjct:  398 AASAFCNARAKLDEEVFKLLQVQILQQAKPDPKKLWQGHRLMAVDGSKLNLPRQLIRAGYKTPSDN------AHYPQGTVSCLYELKTKIPIDFDLASHRDERKMAISHLNSLSETDVVVYDRGYYSYDMLHEHDKRHIHPIFRLKTTACRVVEAFANSDDIDAVVQIFPSQSKRTSIPAHDPQPDYPALALRLVKYDAGGTSYILGTTLWDQKKYSIEQLSAVYHSRWGVEELYKISKQLMKVEDFHAQSERGVKQELFAHFNLITL 659          
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: A0A6L8GGC8_9BACT (IS4 family transposase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8GGC8_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 2.510e-16
Identity = 78/264 (29.55%), Postives = 125/264 (47.35%), Query Frame = 1
Query:  121 AIHSARKKLPPGAFKEVNR-FLQRGPHEP-----RVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLILG---VRARL---------------LKYFISGKTYVCLTNDLS----LSRRDIKVVYASRWRVEESFKR*KSNLKLEKAHAKTPALYIQEVEARVLLDTIT 828
            A+  AR K+ P  F+E++R  L + P  P     RVF VDG+K+++    + AGY T  ++      A  P  ++S + +++ +   DF L    +ER+AA E L+ +  GD +V+DRGY+S  +L +        V+RLK +A   T  F      + T  I      RARL               L  + +G T   L   L+        D+  +Y +RWR+EE +K  K  L +E   A++    +QE+ A  ++ T T
Sbjct:  379 AMSRARAKVDPEVFRELHREILAQAPDRPLWKGRRVFGVDGAKINLPRPLVEAGYATPGDH------AHYPQGLVSCLYELEPRLPFDFGLHADTSERRAAAEHLKALSAGDVVVYDRGYFSYEMLLAHVVRGQDAVFRLKRDANAETVAFLAGPLDDRTVEIRPDDKARARLKARHPGAAFGPLKLRLVRYAAGDTVFALGTTLAEDDGFGLEDLAAIYRARWRIEEHYKIAKWFLAVESFRAESERGVLQELYANFVMVTAT 636          
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Match: A0A6L8GJ11_9BACT (IS4 family transposase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8GJ11_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 6.530e-15
Identity = 77/273 (28.21%), Postives = 123/273 (45.05%), Query Frame = 1
Query:   97 ENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEP------RVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRP-AKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLILG-------------------VRARLLKYFISGKTYVCLTNDLS---LSRRDIKVVYASRWRVEESFKR*KSNLKLEKAHAKTPALYIQEVEARVLLDTIT 828
            + E   + +I  AR+++    F +++R + R   +       RVFAVDG+K+++    + AGY       P+P+  A  P  ++S +  + TK  VDF L+    ER AA   L  +  GD +VFDRGY+S  LL +V  + A  V+RL+ N     + F     TEA                         V  RL++    G  +   T  L    +S  D+  +Y  RW +EE +K  K  + +++ H +T     QE+ A   L  +T
Sbjct:  393 QREPVVASSICKARQRVHEELFLDLHREILRHGGDGARWKGRRVFAVDGTKMNLPRGLVDAGY-------PLPKDGAHYPQGLVSCLYRLDTKVPVDFSLSARACERTAALGHLHALEAGDVVVFDRGYFSFELLHAVIRTGAHPVFRLQANGVAAFRDFMAGDGTEAVVAASPGPDTRRELARRRPGERFDPVDVRLVRCRTGGDGFNLATTLLDADDVSADDLGALYQGRWSIEELYKVSKQTVAVDEFHGRTERGVRQELYAHFNLIAMT 658          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LP60_ECTSI1.530e-23394.74EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
D8LP47_ECTSI5.580e-19888.01EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K772_9PHAE7.940e-18077.33DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
Q8QNB6_ESV1K1.020e-17779.68EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JA56_9PHAE8.960e-15778.41DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0K9_9PHAE8.730e-12175.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4T1_9PHAE2.200e-3754.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2Z2NHE4_9GAMM8.780e-2331.34Uncharacterized protein n=1 Tax=Granulosicoccus an... [more]
A0A6L8GGC8_9BACT2.510e-1629.55IS4 family transposase n=1 Tax=Acidobacteria bacte... [more]
A0A6L8GJ11_9BACT6.530e-1528.21IS4 family transposase n=1 Tax=Acidobacteria bacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:18841..19884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1046724.KB889834_gene1048
PFAMsDDE_Tnp_1,Nterm_IS4
Model size1044
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorymitochondrion
Exons1
Evalue7.26e-20
EggNOG OGsCOG3385@1|root,COG3385@2|Bacteria,1MVRM@1224|Proteobacteria,1RRFT@1236|Gammaproteobacteria,464GA@72275|Alteromonadaceae
DescriptionCOG3385 FOG Transposase and inactivated derivatives
Cds size735
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.0366108-CDS-P-littoralis_Contig15:18840..195751680789709.0366108-CDS-P-littoralis_Contig15:18840..19575Pylaiella littoralis U1_48CDSP-littoralis_Contig15 18841..19575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.047787-UTR-P-littoralis_Contig15:19575..198841680789709.047787-UTR-P-littoralis_Contig15:19575..19884Pylaiella littoralis U1_48UTRP-littoralis_Contig15 19576..19884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.3.1prot_P-littoralis_Contig15.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 18841..19575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.3.1

>prot_P-littoralis_Contig15.3.1 ID=prot_P-littoralis_Contig15.3.1|Name=mRNA_P-littoralis_Contig15.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=245bp
MLKLTTLRTSSLFYMLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLP
PGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPR
PAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVF
DRGYYSKNLLRSVHDSHAFGVWRLKINAFKCTKPFFNSCHTEATCLILGV
RARLLKYFISGKTYVCLTNDLSLSRRDIKVVYASRWRVEESFKR*
back to top

mRNA from alignment at P-littoralis_Contig15:18841..19884+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.3.1 ID=mRNA_P-littoralis_Contig15.3.1|Name=mRNA_P-littoralis_Contig15.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1044bp|location=Sequence derived from alignment at P-littoralis_Contig15:18841..19884+ (Pylaiella littoralis U1_48)
ATGCTTAAGTTGACGACACTGCGGACATCTTCCCTTTTCTACATGCTCAC TAAGTGTTGTATTCAAGAGAGAGGTGTCGCTCACATACTGAGGATGGAAA ACGAACAGTACTCGTCTCAGGCGATACATTCGGCCAGGAAGAAGCTTCCA CCAGGGGCTTTCAAGGAAGTAAACCGGTTCTTGCAACGAGGACCACATGA ACCACGTGTGTTCGCCGTAGATGGTTCGAAAGTGCACGTGCACCCTTCGT TCATCGGGGCTGGATATATGACCCGGACGAACAATAAACCGGTCCCGCGT CCCGCGAAAAGACCTCTTGTCATGCTTTCTTCGATGGTGGACGTAAAAAC AAAAGCGTGTGTGGACTTTGAGCTCACGAAACACTTCAACGAAAGAAAGG CAGCCACTGAGATGCTCCGAGGTGTACGGAAAGGGGATACTCTGGTGTTT GACAGAGGCTACTACTCCAAGAACTTGCTGCGAAGCGTTCATGACTCGCA TGCGTTTGGGGTTTGGCGACTCAAGATAAATGCGTTCAAATGCACTAAGC CTTTCTTCAACTCGTGTCACACGGAAGCAACATGCCTTATTCTTGGTGTC AGGGCGCGTCTCTTGAAGTATTTTATTTCTGGTAAAACATATGTTTGCCT GACGAACGATCTATCGCTATCTCGGAGGGATATCAAGGTCGTGTACGCGT CGAGGTGGCGGGTGGAGGAATCCTTCAAACGATAGAAATCAAACCTCAAA CTTGAGAAAGCACATGCCAAAACTCCGGCTCTTTATATTCAGGAGGTAGA AGCGCGGGTCTTGTTAGACACAATCACACTGAGGTTGCAAAAATCGATGA AGGAACCATCGTATATCTACACACTTGATACATACGTCACACATATCCTT AACAACGTCAAGAGAGTTTCGAATCCCGTGAAATTGAGCGCACATTCTGA AGCAGATGTGTTCTCCAAGAAGCGAAGTCGCTTGTGCCATGGTCGCATAT ATGATCATCATCGCCACGGACCGATTTTTTCAGACAAACTGACT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig15:18841..19884+

>mRNA_P-littoralis_Contig15.3.1 ID=mRNA_P-littoralis_Contig15.3.1|Name=mRNA_P-littoralis_Contig15.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig15:18841..19884+ (Pylaiella littoralis U1_48)
ATGCTTAAGTTGACGACACTGCGGACATCTTCCCTTTTCTACATGCTCAC
TAAGTGTTGTATTCAAGAGAGAGGTGTCGCTCACATACTGAGGATGGAAA
ACGAACAGTACTCGTCTCAGGCGATACATTCGGCCAGGAAGAAGCTTCCA
CCAGGGGCTTTCAAGGAAGTAAACCGGTTCTTGCAACGAGGACCACATGA
ACCACGTGTGTTCGCCGTAGATGGTTCGAAAGTGCACGTGCACCCTTCGT
TCATCGGGGCTGGATATATGACCCGGACGAACAATAAACCGGTCCCGCGT
CCCGCGAAAAGACCTCTTGTCATGCTTTCTTCGATGGTGGACGTAAAAAC
AAAAGCGTGTGTGGACTTTGAGCTCACGAAACACTTCAACGAAAGAAAGG
CAGCCACTGAGATGCTCCGAGGTGTACGGAAAGGGGATACTCTGGTGTTT
GACAGAGGCTACTACTCCAAGAACTTGCTGCGAAGCGTTCATGACTCGCA
TGCGTTTGGGGTTTGGCGACTCAAGATAAATGCGTTCAAATGCACTAAGC
CTTTCTTCAACTCGTGTCACACGGAAGCAACATGCCTTATTCTTGGTGTC
AGGGCGCGTCTCTTGAAGTATTTTATTTCTGGTAAAACATATGTTTGCCT
GACGAACGATCTATCGCTATCTCGGAGGGATATCAAGGTCGTGTACGCGT
CGAGGTGGCGGGTGGAGGAATCCTTCAAACGATAG
back to top