mRNA_P-littoralis_Contig148.143.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.143.1
Unique NamemRNA_P-littoralis_Contig148.143.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 3.020e-91
Identity = 139/169 (82.25%), Postives = 148/169 (87.57%), Query Frame = 2
Query:  107 SRERVARKASQTPRHSRRWSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSRLSPDTDLDASVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPRLCACF 613
            SRERVARKA Q PRHSR WSAAPEPVTHDKRRRLDRYCT PEAV+ L++AVAI GCVLDMCGGPEDAVAQ F  TCEVLTND+SSRLS  T+LDAS+LSFRD+F KAN GK+PDWVVTSPPYKGAVGFVKAALAVATKG ALKLPLSFLEPCADRGGWL + P     F
Sbjct:   93 SRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIF 261          
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.030e-68
Identity = 111/178 (62.36%), Postives = 133/178 (74.72%), Query Frame = 2
Query:   98 RRASRERVARKASQTPRHSRRWSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSRLSP-----DTDLDASVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWL-AETPRLCACF 613
            R  ++ R   +A Q  RH  +W+  PEP  H KRR LDRYCTSPEAV+AL  AV + GCVLDMCGGP DA+A R G TC+V+TND+S+RLSP     DT+LDAS+ SF  DFL A  G+RPDWV+TSPPYKGA+ +VK+AL++A KG ALKLPLSFLEPCADRGGWL A  P +C  F
Sbjct:   44 REKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221          
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.600e-64
Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 2
Query:  101 RASRERVARKASQTPRHSRRWSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSRLSPDTDLDASVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWL-AETPRLC 604
            R SR    R+A + P+    W+ APEPV   KRR +DRYCTSP  ++AL   V+I GCVLDMCGG +DAVA R   TC+VLTND+  RLSP T+LDAS  SF DDFL A+ G++PDW+VTSPPYKGA+ FVKAAL VA KG ALKLPLSFLEPCADR GWL A  P LC
Sbjct:   37 RDSRAPTKRRAKRGPK----WTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALC 201          
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: A0A6H5KZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK3_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 2.710e-64
Identity = 103/124 (83.06%), Postives = 109/124 (87.90%), Query Frame = 2
Query:   98 RRASRERVARKASQTPRHSRRWSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSRLSPDTDLDASVLSFRDDFLKANSGKRPDWVVTSPP 469
            R  SRERVA KA QTPRHSR WSAAPEPVTHDKRRRLDRYCTSP AVDALRDAV I GCVLDMCGGPE AVA  FGGTCEVLTND+ SRLSPD++LDAS+LSF  DFLKA+ GK+PDWVVTSPP
Sbjct:   24 RARSRERVAWKAEQTPRHSRTWSAAPEPVTHDKRRRLDRYCTSPGAVDALRDAVDIMGCVLDMCGGPEAAVALGFGGTCEVLTNDVGSRLSPDSNLDASLLSFPSDFLKAHPGKQPDWVVTSPP 147          
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 1.460e-61
Identity = 101/159 (63.52%), Postives = 119/159 (74.84%), Query Frame = 2
Query:  131 ASQTPRHSRRWSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSRLSPDTDLDASVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWL-AETPRLC 604
            A++TPRH++    APEP TH +RR LDRYCTSPEA+DA   AV I GCVLDMCGGP DAVA R   TCE+LTND+SS    DT+LDAS+ SF +DFL A SGKRP+WV TSPPY  A+ FVKAA+++ATKG   K+ + FLEPCAD GGWL    P LC
Sbjct:    2 AARTPRHAKGQRTAPEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLC 160          
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 4.190e-57
Identity = 101/173 (58.38%), Postives = 121/173 (69.94%), Query Frame = 2
Query:   95 SRRASRERVARKASQTPRHSRRWSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSRLSPDTDLDASVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPRLCACF 613
            S+  S++R ARKA+QTPRH+      PEP TH KRR LDRYCTSPEAV+AL  AV+I GC+LD+CGGP DAVA R G TCEVLTND+SS    DT+LDAS+ SF DDF  A+SGKRPDWVVTSP YK A+ FVKAA+++AT+G  +  P   +             P LCA F
Sbjct:   56 SKERSKDRRARKAAQTPRHATGMWTVPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAPTGVVG--------FKRIPHLCASF 220          
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.610e-52
Identity = 95/155 (61.29%), Postives = 110/155 (70.97%), Query Frame = 2
Query:  161 WSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSRLS------PDTDLDASVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWL-AETPRLC 604
            W++APEP  H KRR LDRYCTS  AV+AL DAV + G VLDMCGGP+DAVA++   TCEV+TND+SSRLS      PDT LDAS  +F  +FL     ++P+ VV SPPYKGAV FVKAAL VA  G ALK  LSFLEPC DR  WL A  P +C
Sbjct:  101 WTSAPEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVC 255          
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.350e-48
Identity = 96/166 (57.83%), Postives = 111/166 (66.87%), Query Frame = 2
Query:   62 RVACWSCTRSTSRRASRERVARKASQTPRHSRRWSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSRLSPDTDLDASVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEP 559
            R+A + C  ST +R    +V R+A+  P       A    ++   RRRLDRYCTSP AVDALR AVAI GCVLDMCGGPEDAVAQ FGGTC              T+LDAS++ F D+F+K N GK+PDWVVTSPPYKG+VGFV AALAVATKG ALKL L    P
Sbjct:    3 RIAPFICEISTGKRWRGRQVRRRATAGP------GAPLLNLSRTTRRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTC--------------TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148          
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: A0A6H5JUT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT6_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.730e-45
Identity = 80/99 (80.81%), Postives = 87/99 (87.88%), Query Frame = 2
Query:  107 SRERVARKASQTPRHSRRWSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSRLSPDTDLDASVLS 403
            SRERVARKA Q PRHSR WSAAPEPVTHDK RRLDRYCT PEAV+ L++AVAI GCVLDMCGGPEDAVAQ F  TCEVLTND+SSRLS  T+LDAS+L+
Sbjct:   59 SRERVARKAKQMPRHSRMWSAAPEPVTHDKCRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLN 157          
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Match: A0A6H5KTR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 5.650e-45
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 2
Query:  107 SRERVARKASQTPRHSRRWSAAPEPVTHDKRRRLDRYCTSPEAVDALRDAVAIPGCVLDMCGGPEDAVAQRFGGTCEVLTNDMSSR 364
            SRERVARKA QTPRHSR WSAAPEPVTH KRRR DRYCTSPEAVDALRDAVAI GCVLDMCGGP+DAVA  FGGTCEVLTND+SSR
Sbjct:  100 SRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDALRDAVAITGCVLDMCGGPDDAVAMGFGGTCEVLTNDVSSR 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK3_9PHAE3.020e-9182.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI1.030e-6862.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K049_9PHAE1.600e-6463.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZK3_9PHAE2.710e-6483.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Y0_ECTSI1.460e-6163.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD58_9PHAE4.190e-5758.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE3.610e-5261.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1N5_9PHAE3.350e-4857.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT6_9PHAE2.730e-4580.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTR5_9PHAE5.650e-4589.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:486559..487314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size615
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789701.8875842-UTR-P-littoralis_Contig148:486558..4868101680789701.8875842-UTR-P-littoralis_Contig148:486558..486810Pylaiella littoralis U1_48UTRP-littoralis_Contig148 486559..486810 -
1680789701.8973691-UTR-P-littoralis_Contig148:486951..4871041680789701.8973691-UTR-P-littoralis_Contig148:486951..487104Pylaiella littoralis U1_48UTRP-littoralis_Contig148 486952..487104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789701.9065764-CDS-P-littoralis_Contig148:487104..4873141680789701.9065764-CDS-P-littoralis_Contig148:487104..487314Pylaiella littoralis U1_48CDSP-littoralis_Contig148 487105..487314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.143.1prot_P-littoralis_Contig148.143.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 487105..487314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.143.1

>prot_P-littoralis_Contig148.143.1 ID=prot_P-littoralis_Contig148.143.1|Name=mRNA_P-littoralis_Contig148.143.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
RFPGFQSIAAGTNLLARCKQSGCLLELYKKHESARKQGTRGAEGKSDAAP
QPALERRSRTGHARQTPAT*
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mRNA from alignment at P-littoralis_Contig148:486559..487314-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.143.1 ID=mRNA_P-littoralis_Contig148.143.1|Name=mRNA_P-littoralis_Contig148.143.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=756bp|location=Sequence derived from alignment at P-littoralis_Contig148:486559..487314- (Pylaiella littoralis U1_48)
AGGTTTCCTGGCTTTCAGTCGATCGCCGCGGGCACAAACTTGCTCGCGCG ATGTAAACAGTCGGGTTGCCTGCTGGAGCTGTACAAGAAGCACGAGTCGG CGCGCAAGCAGGGAACGCGTGGCGCGGAAGGCAAGTCAGACGCCGCGCCA CAGCCGGCGCTGGAGCGCCGCTCCCGAACCGGTCACGCACGACAAACGCC GGCGACTTGATCGGTACTGTACTTCGCCGGAGGCGGTGGACGCCCTGCGA GATGCTGTTGCTATACCGGGTTGTGTGTTGGACATGTGCGGCGGACCTGA AGACGCTGTGGCGCAGAGGTTTGGGGGCACGTGTGAAGTTCTCACGAACG ACATGAGCTCGAGGTAAGGAGGTCCATTTAGGAGAAAAGTCGTTTTCGAA TATTTGCTTCCAGCAGTTCTGTAGATAAGTATTTCCAACGCAATGAAAAC AAATGGCGTACTCACATTTCCTCTGTTGGTGTTTCTTTCCGCCCGCCACA AAAGGCTATCGCCGGATACCGACCTGGACGCGAGCGTGCTTTCTTTTCGG GATGATTTTCTCAAAGCCAACTCCGGAAAGCGACCAGACTGGGTCGTCAC GAGCCCTCCGTACAAGGGTGCTGTGGGGTTTGTCAAGGCGGCGTTGGCGG TAGCGACGAAAGGCGCGGCGCTGAAATTGCCGCTATCGTTCCTAGAACCC TGTGCCGACCGTGGTGGTTGGCTTGCGGAAACCCCCCGGCTGTGTGCGTG TTTTTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:486559..487314-

>mRNA_P-littoralis_Contig148.143.1 ID=mRNA_P-littoralis_Contig148.143.1|Name=mRNA_P-littoralis_Contig148.143.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig148:486559..487314- (Pylaiella littoralis U1_48)
AGGTTTCCTGGCTTTCAGTCGATCGCCGCGGGCACAAACTTGCTCGCGCG
ATGTAAACAGTCGGGTTGCCTGCTGGAGCTGTACAAGAAGCACGAGTCGG
CGCGCAAGCAGGGAACGCGTGGCGCGGAAGGCAAGTCAGACGCCGCGCCA
CAGCCGGCGCTGGAGCGCCGCTCCCGAACCGGTCACGCACGACAAACGCC
GGCGACTTGA
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