mRNA_P-littoralis_Contig148.127.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.127.1
Unique NamemRNA_P-littoralis_Contig148.127.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Match: D7G7V4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V4_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 1.660e-107
Identity = 170/201 (84.58%), Postives = 182/201 (90.55%), Query Frame = 1
Query:  541 VSSPCPSQAQAMCPEETWGVISRLTTALVRELEPERLAEVERGLADMASRVTGTTDLEMVVPGLIRLLGGDSKALSALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFEQYVQVYHKRREQSVDDMFSHSTDGANNHFELDFEVRATFDREMTKLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL 1143
            V  P P+QAQ   PEETW +I+RLT+ LV ELEPER+AEVERGLA +A RVTGTTDLEMVVP LI LLGGD KAL ALKMVDQGVVLLGVHHMKG VTRGL+TKDVRSA GWQIGMDVFEQYVQVYHKRREQSVDDM+S + DGA+NHFELDFEVRATFDREMT+LTAAGLRVQRLVCSPTMQPEMRVQLESRILGD+IIL
Sbjct:   14 VLPPAPTQAQG--PEETWALIARLTSTLVHELEPERMAEVERGLASIADRVTGTTDLEMVVPELIHLLGGDGKALRALKMVDQGVVLLGVHHMKGGVTRGLVTKDVRSASGWQIGMDVFEQYVQVYHKRREQSVDDMYSQTVDGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 212          
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Match: A0A6H5L330_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L330_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 4.270e-102
Identity = 165/191 (86.39%), Postives = 176/191 (92.15%), Query Frame = 1
Query:  571 AMCPEETWGVISRLTTALVRELEPERLAEVERGLADMASRVTGTTDLEMVVPGLIRLLGGDSKALSALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFEQYVQVYHKRREQSVDDMFSHSTDGANNHFELDFEVRATFDREMTKLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL 1143
            A  PEETW +I+RLT+ LV ELEPE++AEVERGLA +A+RVTGTTDLEMVVP LI LLGGDSKAL ALKMVDQ VVLLGVHHMKG VTRGL+TKDVRSA GWQIGMDVFEQYVQVYHKRREQSVDDM S + DGA+NHFELDFEVRATFDREMT+LTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL
Sbjct:   24 AQGPEETWALITRLTSTLVHELEPEKMAEVERGLASIAARVTGTTDLEMVVPELIDLLGGDSKALRALKMVDQRVVLLGVHHMKGGVTRGLVTKDVRSASGWQIGMDVFEQYVQVYHKRREQSVDDM-SQTVDGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL 213          
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Match: A0A7S2SSQ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSQ3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.340e-27
Identity = 89/235 (37.87%), Postives = 131/235 (55.74%), Query Frame = 1
Query:  439 VRRIWQRPATEGSLSKDLPRLARRVTVRTRRDGGVSSP--CPSQAQAMCPEETWGVISRLTTALVRELEPERLAEVERGLADMASRVTGTTDLEMVVPGLIRLLGGD-SKALSALKMVDQGVVLLGVHHMKGSVTRG--LLTKDVRSADGWQIGMDVFEQYVQVYHKRREQSVDDMFSHSTDGANNHFELDFEVRATFDREMTKLTAAGLRVQRLVCSPTMQPEMRVQLESRILG 1128
            +R  +  P TE SL+KDLPRLA R+ +        +SP  C     +   EE    + ++ + L   L+P++  EVE        R+    D ++    L+  LGGD S  + ALK+V QGVVL  +  ++     G  +LTKDVRS DGW++ +DV +Q  Q+ H R+EQS+D MF  +T     HFE +FEV AT D  ++ +TAA LRV     + TM+P+ R +L+ +ILG
Sbjct:   10 LRPAFLAPFTETSLAKDLPRLASRIAI--------TSPTLCLDARGSGGEEERTSRVFQVVSLLSAVLQPDQCTEVEELCHAYDQRLAEGADPQIACTELLGALGGDESPVVRALKLVRQGVVLGAMELLRSQAPEGVDILTKDVRSVDGWRVYIDV-QQAFQIRHVRKEQSLD-MFGDATQ----HFEYEFEVSATLDSALSGVTAAWLRVLHAEYAETMKPDRRAELQ-QILG 229          
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Match: A0A2R5GCW9_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCW9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.440e-23
Identity = 69/184 (37.50%), Postives = 108/184 (58.70%), Query Frame = 1
Query:  598 VISRLTTALVRELEPER--LAEVERGLADMASRVTGTTDLEMVVPGLIRLLGGDSKALSALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFEQYVQVYHKRREQSVDDMFSHSTDGANNHFELDFEVRATFDREMTKLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL 1143
            +I  L   L+  LEP+    A V   + ++ + VT  +DL++VV  +I  +G DSK    LK + Q VVL     +K  +T    TKDVRS+DGW+I + + + + QV H RREQS+D     S     NH+E ++E+R TFD++M  +TAA LRV RL+ S TM   +  +L++ ++  +I++
Sbjct:  294 LIVDLIVVLLAYLEPDEDVQAAVIEEVREIQASVTEASDLQLVVRQIIEAVGVDSKVTKVLKCIHQNVVLQSTVAIKEKLTMQFPTKDVRSSDGWRITITLSKGFAQVRHTRREQSID-----SFGNIENHWEFEWELRMTFDQQMQNMTAAQLRVTRLMLSETMDVGLAARLKATLVDGLIVM 472          
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Match: A0A7S2DNQ4_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNQ4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.470e-18
Identity = 73/230 (31.74%), Postives = 113/230 (49.13%), Query Frame = 1
Query:  466 TEGSLSKDLPRLARRVTVRTRRDGGVSSPCPSQAQAMCPEETWGVISRLTTALVRELEPERLAEVERGLADMA-SRVTGTTDLEMVVPGLIRLLGGDSKAL-SALKMVDQGVVLL--GVHHMKGSVTRGLLTKDVRSADGWQIGMDVFEQYVQVYHKRREQSVDDMFSHSTDGANNHFELDFEVRATFDREMTKLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL 1143
            TE + ++ +   A+   + ++ +    +   ++     P +    + ++  AL   L+P R  E+    A M  S+V    D +M    ++  LG D   L   LK   QGVVL   G    K    + L+TKDVRSADGWQ+ + V +  V + H RREQS+D         A+NHFE  FEV  TFD ++ ++ A  LR+  L  + TM+ E+R  L S     ++IL
Sbjct:  139 TESTAARPVGAEAKMSAIESQAEEAGGAGYNNEESTRVPAQPPSDVHQVVRALTAILDPTR-KELNLEAARMYDSQVQSGMDPQMACADMVNALGADDSPLVRLLKFTTQGVVLAAKGAILDKIGTEQHLMTKDVRSADGWQVAITVIDSVVMIRHVRREQSLD-----LWGDASNHFEYTFEVACTFDTKLERIFATDLRILDLTLADTMESELRRTLTSAFTTGLLIL 362          
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Match: A0A7S3V399_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V399_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.860e-18
Identity = 74/226 (32.74%), Postives = 119/226 (52.65%), Query Frame = 1
Query:  439 VRRIWQRPATEGSLSKDLPRLARRVTVRTRRDGG---VSSPCPSQAQAMCP---EETWGVISRLTTALVRELEPERLAE-VERGLADMASRVTGTTDLEMVVPGLIRLLGGDSKALSALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFEQYVQVYHKRREQSVDDMFSHSTDGANNHFELDFEVRATFDREMTKLTAAGLRVQRLVCSPTMQPE 1095
            ++ ++ R     S  KDL RL  R+++  R  G    V +P  S+  A       E   ++S L+T L++  E + +AE   R L ++  R  G  +   +V  ++ L+G DS++   LK ++Q +VL G   MK ++T+ + TKDVR  DGW I + + E +VQV H R+E         + +  +N +++++EVR TFDR M  LTAA LR+  L     M  E
Sbjct:   79 MKSVFDRNIETLSTYKDLGRLISRLSLLLRIPGQGDVVLNPIKSERTAGLSGGEAEIVAIVSLLST-LLKFFEEKHIAESFVRQLKEVRERY-GEVENRHLVKEMVALIGTDSRSARVLKCINQSIVLQGTFEMKSTLTKTVTTKDVREEDGWLIVVTLAE-FVQVKHTRKEHCT----YATRNEPHNRWDIEWEVRLTFDRNMEDLTAAQLRITNLHLGDAMDEE 297          
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Match: A0A7S4DYT7_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DYT7_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 8.490e-9
Identity = 65/244 (26.64%), Postives = 112/244 (45.90%), Query Frame = 1
Query:  421 EAFTTGVRRIWQRPATEGSLSKDLPRLARRVTVRTRRDGGVSSPCPSQAQAMCPEETWGVISRLTTALVRELEP-ERLAEVERGLADMASRVTGTTDLEMVVPGLIRL----LGGDSKALSALKMVDQGVVLLGVHHMKGSVTRGLLT--KDVRSADGWQIGMDVFEQYVQVYHKRREQSVDDMFSHSTDGANNHFELDFEVRATFDREMTKLTAAGLRVQRLVCSPTMQPEMRVQLESRILGD 1131
            + F       W+   T   + KDLPRL RR+ V T +  GV       ++     + W  +  +   +   +E  E LA++E+ L D         D   + P L  +    LG DSK +   K V Q +++  +  +  +V + L    KDV+  +GW+I + + E  V V H R EQS+     HS      HFE ++ +R +FD+ M  L A  +R+  +  +P M  +++  + + + G+
Sbjct:  291 DVFVEQFAATWKSARTV--VYKDLPRLVRRIRVHTPK--GVQFEGSDDSK-----DLWETVCSVIVVVATAMETKETLAKLEKALKDQ-----NVQDTAEIFPSLRSIFEDTLGLDSKTMKVFKTVHQSILVPAMVKLADTVFKPLQQNFKDVKRREGWKIQIHLGEA-VYVIHNRIEQSL-----HSRQDPQ-HFECEWTLRLSFDKNMEDLRAVFVRIVDVNTNPNMPKDLQDTVITALKGE 513          
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Match: L8GWR0_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWR0_ACACA)

HSP 1 Score: 66.2 bits (160), Expect = 8.430e-8
Identity = 50/186 (26.88%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  601 ISRLTTALVRELEPERLAEVERGLADMASR--VTGTTDLEMVVPGLIRLLGGDSKALSALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFEQYVQVYHKRREQSVDDMFSHSTDGAN-----NHFELDFEVRATFDREMTKLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMI 1137
            +S L   +   LEP   A   +   D   +     T D+ M++  +++  G   +  S LK + QGV+L     +K  VT+ +LTKDVR+ DGW++ + +      V H RRE S+         GA      N F  ++ +   F+  +T+L A  LR+  L   P    E + +L        +
Sbjct:  256 LSSLVCRIAEALEPRETALQVKNSFDFYKKNGTAETMDMGMIMQAILKN-GVGPRTESILKAIHQGVILTTAFEIKHKVTKSILTKDVRTKDGWRVHVHLAPNGAVVTHTRREMSI---------GARGPEPENEFVFEWRLSMFFNAALTELEAVKLRLTDLQFGPQTTAENKQKLNQTFFNGQL 431          
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Match: A0A7S0MTD2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MTD2_9CRYP)

HSP 1 Score: 53.9 bits (128), Expect = 7.180e-5
Identity = 37/126 (29.37%), Postives = 59/126 (46.83%), Query Frame = 1
Query:  706 DLEMVVPGLIRLLGGDSKALSALKMVDQGVVLLGVHHMKGSVTRG--------LLTKDVRSADGWQIGMDVFEQYVQVYHKRREQSVDDMFSHSTDGANNHFELDFEVRATFDREMTKLTAAGLRV 1059
            DLE  +  L   L      +   K+++Q  +   +  +K S            L+TKDVRSADGW+I +D+ +  + V H RREQS+      S + +   + + + +   F R+M  LT   L V
Sbjct:   18 DLEPYIRELFSSLDETGPTIRVFKLINQAALAAAITPLKLSAASRSANLRADMLMTKDVRSADGWRISIDIGDHEICVTHIRREQSL------SGEASPEGWSMTWRLAIFFPRDMADLTRTTLEV 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G7V4_ECTSI1.660e-10784.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L330_9PHAE4.270e-10286.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SSQ3_9STRA1.340e-2737.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R5GCW9_9STRA1.440e-2337.50Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S2DNQ4_9STRA2.470e-1831.74Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3V399_9STRA9.860e-1832.74Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S4DYT7_9EUKA8.490e-926.64Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
L8GWR0_ACACA8.430e-826.88Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7S0MTD2_9CRYP7.180e-529.37Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:450342..459490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7V4
Model size1906
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.13e-113
EggNOG OGs2E713@1|root,2SDP3@2759|Eukaryota
Cds size867
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.127.1prot_P-littoralis_Contig148.127.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 450621..458730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789701.433788-UTR-P-littoralis_Contig148:450341..4506201680789701.433788-UTR-P-littoralis_Contig148:450341..450620Pylaiella littoralis U1_48UTRP-littoralis_Contig148 450342..450620 +
1680789701.500529-UTR-P-littoralis_Contig148:458730..4594901680789701.500529-UTR-P-littoralis_Contig148:458730..459490Pylaiella littoralis U1_48UTRP-littoralis_Contig148 458731..459490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789701.443378-CDS-P-littoralis_Contig148:450620..4506721680789701.443378-CDS-P-littoralis_Contig148:450620..450672Pylaiella littoralis U1_48CDSP-littoralis_Contig148 450621..450672 +
1680789701.4526372-CDS-P-littoralis_Contig148:455053..4552521680789701.4526372-CDS-P-littoralis_Contig148:455053..455252Pylaiella littoralis U1_48CDSP-littoralis_Contig148 455054..455252 +
1680789701.4677253-CDS-P-littoralis_Contig148:455817..4560671680789701.4677253-CDS-P-littoralis_Contig148:455817..456067Pylaiella littoralis U1_48CDSP-littoralis_Contig148 455818..456067 +
1680789701.4793198-CDS-P-littoralis_Contig148:456781..4569131680789701.4793198-CDS-P-littoralis_Contig148:456781..456913Pylaiella littoralis U1_48CDSP-littoralis_Contig148 456782..456913 +
1680789701.4891098-CDS-P-littoralis_Contig148:458496..4587301680789701.4891098-CDS-P-littoralis_Contig148:458496..458730Pylaiella littoralis U1_48CDSP-littoralis_Contig148 458497..458730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.127.1

>prot_P-littoralis_Contig148.127.1 ID=prot_P-littoralis_Contig148.127.1|Name=mRNA_P-littoralis_Contig148.127.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=289bp
MNATSIGYQDGRAGVAAGLCGRWPWGSSAADDVDGSRWANPGSEDESEAF
TTGVRRIWQRPATEGSLSKDLPRLARRVTVRTRRDGGVSSPCPSQAQAMC
PEETWGVISRLTTALVRELEPERLAEVERGLADMASRVTGTTDLEMVVPG
LIRLLGGDSKALSALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQ
IGMDVFEQYVQVYHKRREQSVDDMFSHSTDGANNHFELDFEVRATFDREM
TKLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL*
back to top

mRNA from alignment at P-littoralis_Contig148:450342..459490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.127.1 ID=mRNA_P-littoralis_Contig148.127.1|Name=mRNA_P-littoralis_Contig148.127.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9149bp|location=Sequence derived from alignment at P-littoralis_Contig148:450342..459490+ (Pylaiella littoralis U1_48)
CCCATACAACATCAGCAGTACCCCGCCTCAGCAGCAGTCGGACCATCTAC ACCACCCTCTCTCTGATGCATATGGAGCATATCCTATAGATACTCTGAAC CTCGAAGACCGCTACATGATTTTTCCGTTTCGTTGGATTTCCTCACTGCC CTCCCCCCACTGGCATCAACATACATATCCTCCTTTCCATCCTCAGTTCA ACCTCGCAAAATTCGGCTGCACCGGTGCACAGATCTACACCAGCGGTAGT GGCGAAGGATTTAGAGGAGTGCGAGCGATATGAACGCCACCAGCATCGGC TACCAGGATGGTAGGGCTGGCGTTGCTGCCGGTGAGTTACTAGCTTCCAT TTTTGGGGTGTGGATCTTTAATTTTGTGGTGATGTGTCTCTGGGCTCCAG GTTTATTTTCTTCGTATGACACCCAAGTACTTCGAAGTACAAGTATATTT TATATTTTCCGTTCATCGGTGTTCATCGGTATGATGAACTGATCCTGCGC ATATAATTAAGACTCTATAATTAATGCTGTACGAGTATATTGTACCAGGT ATATATATGTGACGAGAAGTGCTCGAACCTACAACTGCTCGTTCGTGTAG ATGAGTTGTTCCGGTGAAAAACGTACAGCATCAGTGCACACGGTACAAAG TAATACTCCGGAGTATACTTCGAAAACAATCTGTACGTACGTAAATATAA TACGAGATCGATACATCAGTAGATCAATCCCCGATCGCCGATGGCCGTAG ATCACCGAACGCGAGAGGCACGTGAAAGCCCACAAATAACTGGGTTGTTG CGCATTGCGTGCCCTTCACCTGTCTAAAGTATGGATGCGGGGTGATGGCG CCCTGAATATTATTTCCTGGGCGGTACTTGTGGTTGCTGCACCCGTCGTC CCTGTACGTAGATGTGGAAGCTATACTTCTGTAGATGTGGACGACGGTGC ACAACTGCTTCCTCCTGTGTGATCGTGGAAGACTGCAGTCCGGTAGTTAT TACTCCGAGTATATCATATATACGAATTGCAGTAGCCACAGCAGCAGCCA AGAAGATCGCTTGCTTTTGAATTCAATCCGTCACGTACATAGTGTTGTTG TTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCA CAAACCAGGCACATATCGTGCTAGGAGGAAAAAATAAAAATAAAATAAAT GGACTATGATCACCCACAGTCAAATCAGATATGGTACCGCTGGGGTACGA TCTGTGGTGGCCAAAGTACCAAACAAAATACAGAAAAAAAAATAACAGGT TCGAAAGAAAAACAAAAATTGGAAACAGTCCGACAAACAAAAAATAACCA AGACAAACCTCAACCATGACCATATACTTCGAAGTACTTCGTACATCGAA CCAGGGCCCAGGGCCATGACAGACCAAGGCAAAGGCAAACCAGGGCGATG GTCCAGTAACTATGGCCCCGGATTAACGGGGAATTGAAAAAAACGAAAAT GCGAAAAAGAAAACGAAATTGGGCTCTGATTGGTCCGAGAAAAAAAGAGA AAGAGGCGTTATTTTCTTCGAAAGAGGCGTGTCTCCAATTCAGCACACAC CGAGCAGGCGGTATTTCGTTTTTTTCTTCGCGAAAATAAAGTGTTTTGGA CCTTTTTTTTTTTGCGAAAACGAAAACGAAATGCCGGAGTGTCGTAGCTT GGGGAGGCTTGATTCAACAGCCTCCCAGGCTCCATGGCAACCAAGAAGTC GGCGCAACAGCCAGCTCGCAACAGCTAGGTAGCAAGAGCAGGACACGACA GCGATATAGGCAAGGAGAGAACGCTCGCTCACGGAACACACTCGCAGGAG AACTTCTGCTGTCGTCATGTGTTGTTTGTTGCACATCACACCGCATCCGT TGCAAACTATGCGCGCGCTAGGGTTTGTACTTCATGTTTGGCGTTGTCTC TTCTTATTCGGGTCCTCGGTGTCCCTGTGGAAAAACTCGTTAATACCCAA CAACGATTATTTTTTTATTTTTTCCATAAGAACGAAGTTCTTTCGTTTTC TTTTTCGCAATTTCGTTTTTTCAATTCCCCGTCAATACGGGCTCTACATG ATCAATATACGAAAGACAAAAAAAAAGAAGATACGGGGAGGGCACAAAGA CTGAGGGGGTGCACTCGTACACAAACACAACAGGCCGCCAAACAAAGAGG AAGCAGGGGAACGAAAAGGGAAAAGAAAAAAAAGAGACAAAGAGGAATAA AATACATACATTATGTATGTATGGTACAGTACGGGATCCGCTGCTGTGCC CTTTGACGCTTTGTGTCACAACAAAGGGAGATGGAGGCTTCCGCTTATGG ACTTCTTCATGGATGATATAAGAACACATAAGCTTTTGTAAATCCTTCTT AGCATTTTCTTTGCTCTCCTTGGGCTGAGAACGGCCGAGATTGACAGCTG ACTGTATTTTGCGAACTGTTCAGCGAACAGCCCAACTGCAAAACGTCAGC AAAACGTCAGCTGGCGGAAGCTGCCGGAAAACGGAAACAGCCCAAGCGCC CGTCAGCAAGAAGAGCAAAGAGCTTTCAGCTTTCGCCAGCTGCTGAACTT TTGAAAGAAAACAGCCCAAGCGCACGTCAGCAAGGAGCAAACAGCTTTCA GCTCTCAGCCAGACTACTACTTCTGTACCAAGCAATCACGAACAGGTCTC GCATGTAATGTATGTGTGGAGGAAGCACAGGTCTCGCGCGTGTACTATGT GTAGCAAGCTTGGTTTCGCCCAGTACCCCACTTTTTGCAGACACAGACAG TAGTCTCCCAATGCCAAGCAACGCAGGCGGCTAGACTACATATATGGACG CACAGCAGTAGTATAGTCATGCACACGTGTGTACATAGCGATCAAGCCCA GATCGCCTCGCATCTCACTTTTGCCGCGCTCGATGTCCAGCATCGCGTAC CTGATGCTACACTGCTGTGACAACCAGCCAGAGCGAAAAAGAAAAGTCAA ACGCGCGCTACGTACGGACGGGTGACTGCTGTGTGAGACCTGTTTTTTCT TTGTGATAGTGAGACAACCAGATAGATAGACAAATGCTGCTTTCAGTGCT TCCGCGCGGAGCTCCATATCTATCTGCACATGTCTGAGAGTGAGTGTCGG ATTGGCTGGTTGAGGCTTGCGGTTGTGAGCTCGTGGCATGAGAACCGGGA TTAACGGAAGGCCAAAAAAAACGAAATAGCGGAAACAAAAACGAAATAAC TTCGTTCTTCAGGAAAACAAAATAAAAAACTCCATTTCGGTATCGCTTTC CTGCTGCGAGGAGCTGGAGCAGCGGAATAGAGGAGATAACGCCAAAAATG ATGTAAACCCAGAGCGCGCGGGGCCCGATTTCAAATAACGCAGTGGAATG CATCGTGTCAGCGTGTGGGTATCGTAGACGGCCGTGTGCTGTCTGTTGCA CTGACTGGCGGGTATGACGGCTTGGCGCTGTCTACTGCCCTGCTGTAGTG TGTGGATTGGGCCTCGCTCTGTTCGGCTTGGTGTCTGTTGCACCGCCGTG TACCGCAGTCGCAATCTCTGTGAAGGAGTTCGCTGCCTGGGAGGCTCATG GGCAAGCCTCCCAGGTTACCAAACTCCATGCATTTCGTTTTCGTTTTCGC AAAAAAACAGGTCCGAAATACTTTATTTTGCGAAATCGAAAACGAAGGAA CGCCTCCCCGGAGGACGTTGAAACGAAAACACGCCTCTTTCGTTTTTTTC CCGACCAATCAAAGCCCAATTTCGTTTTCGTTTTCGCTATTTCGTTTTTT TTGGCCTTCCGTTAATCCCGGCTCTGAAAGCGGTGCCCTGGAGAAATGAA AAGTTCGTGTGTTTTGCGGCGAGACGAGCGTGTGTATCCCATAGTCGATC CGGCTCTCCGCGCTCCGCCATACACGGACATTGCCACTTCTCTACAGGAG GCATCCCCTGATATACATGCCACTGTCGATCACGAGCGTAATTTTGAGAG GCACCACTTCCCTCCGTGCGGAGTTATCCCTATCGTTGGGGTTGATGCTG TGCTGCAAAGCTGGGTCAAAAATTAAAATAAAAAAGGGGGTCGTCGGTGG TGTGGATTTTCTAGGAGGGGTGGGGGGCGGGTGTAAAACAACCCAGCTTA ACGAGGTGGGGGGGGTTGAACCGTGAACCGTTACAGGCAGTAAGTAGTCT CCCGTTTTTTATTTGTCTCTCCGACACACCACACACAGCAGGCGCTTCCG CAAAATAAATGTGTCTTCGGCTTAGTCTTGAATCACCCCCTATCGCACTC TTTATACCCTCATTCATTAGCTCACTCTGAAAGGGGGTCTTGTATACTTG TAGGATATACCATACGTTGTTCCCGTTTGATCTCAACCTTTTTACTCTTG GTACGTATCATCTCATGTGTGTAAAGCATCATGGAACTTTCAAACCGGGC TTTCTCTGTTGACGTATGTATTTGTTTCGAACGTCATTTACCGGTTACCG GTACGCCACCTGTACCTACCGCTGCAGAACCCGGCTGCTGTACCTGTGAT ATGTATAAATGTAAAACACTTGAGTGGACAGCAGTGGGCAGCAGTAGTAG TGGGTCGTAGACGGAGATACCTCGAGCTCTCTGCGGTATGAAATACGAAG TAAATACTGTTGTTGCGTACTCCTGCTCTTTGAAGACACGCACCACACCA CTGACGCCACAGGACTTTGCGGGCGGTGGCCGTGGGGAAGCTCCGCTGCT GATGATGTTGACGGATCTCGATGGGCGAATCCAGGCAGCGAGGACGAAAG CGAGGCCTTCACCACGGGCGTACGCAGGATTTGGCAACGGCCTGCGACTG AAGGAAGCCTGTCTAAAGATCTACCGAGACTGGCGCGAAGGGTGACAGTC AGAACACGCAGGTGTGTTCCGCCGGGGGGATTTACACAGATATGAGGAAG GTTTACACTCTCCCTTTCAATATTTCAATATTTCGTACATATCATACAGC ACAGCAGTCTCGTTTTTGCTGTTGTTGATTCTCACATTAACTCACCACCG CCGCAGTCTAGCCCGTGTTCACAAACCTATGTAGACCTGAAGACCTGAAG ACCTGGCCAAATAATTACCTGGTCTCATCATGGGGTGCTGCCGCTGCTGC TGCAACTGCATGTATCAACAAAATCGCTTCTGATGGCGATATCGTCGTAC ACTTTCATCGTACTACTGCTGTATACCACAAGTGATTCTACTGCTGTATC GACAAGGGTGCAACAGAGCGCAGAGCCCAATGATACGCAAGACGCACGTT TTTCTCACCGGCGGGAAAATAATTCGCCGCATTTCCCGCAAACCTCCGCG AAATTCCCCAGTAATCGTAGTCAGTAATCAGCCTGTATCAGTGTGCCTTT GACCATGAGACATGTGATGTGGTATATGCTTCGTGTCATACGTGGCCATT TGCGCGGTCGGTGTGCGTTGTCGCAGGGATGGCGGCGTGTCGTCGCCTTG TCCTTCACAAGCCCAGGCAATGTGCCCGGAGGAGACGTGGGGGGTGATTT CGCGCCTGACAACAGCCCTCGTGCGCGAGCTGGAACCTGAGAGGCTGGCA GAGGTGGAGAGGGGACTCGCTGACATGGCGTCTAGAGTGACGGGCACAAC CGACCTCGAAATGGTGGTGCCCGGGCTCATCCGACTGCTGGGCGGGGACA GCAAAGCCCTGAGCGCCCTGAAGATGGTAAGGGAGTGAATGCCTCACATG GGTGTACGTACTTAGTCCCGCTTGACGCGATCTCTCTTGCGTTGATACAA CGAAGGTATCTCACTATGGAATTCGCCTTGGTCTGGCCGTGGGAGGTTGC GTCCCTGCTCCAGCTAACGGTTCGTTCCCGTGTACACACACTCAACACCT ACGCACACATTTACGCGTCGGCGGCAGCAGCGAGGCATCTCTTGCGTGTC GCAGTTTGAATTGATGGTGTCTCCCACTGCACACCAAATGATGCCGTGAG AAAGCATTCCAGATACTGGACCGCACTCAAGCAACCCAACACGAACATTT CGTCTGTTTTTCCTAAAGTCCTGTGGTTAGCGGTGTTATTATCAGAGCGC TCAATTTCGAAATTTCGAACGTCCAATTTCGAATTTCGGATAGTCGGAAA TTTCGCATTTGAAATTTGAATCCTTCGTAATGATTTTGAAATTTCAAAGG ATTCAAATTCGAAATTTTGGAGCTTTTCGAAATGGTTTTGAACTGATTAT TGTTCACCGAATCGCTCCGAAATTTCGAAATTCCAAAAAAAGAATTCGAA GGATGTGCGCTGATGATAACACCCCTTAGGGTTTTGGTGCAGCACCCATC TGTGGTTGTTCGTGAGCATGAGAACATTCGCGAGATTGTCTTTTTTCGAG GGCCTAATGACTCGTTGCCGTGTTGTCGTGTGCGTCCTAGGTGGACCAGG GTGTGGTGCTGCTCGGAGTGCATCACATGAAGGGTAGTGTCACGCGGGGG CTGCTAACGAAGGACGTGCGCTCGGCAGACGGTTGGCAAATCGGGATGGA CGTGTTCGAGCAATACGTGCAGGTGCGATCATGTCACCGATTGCACAACG TTTAATGTGTCTATCATTGTCATCGCCGTGTTGTGTTTTATGGTGCCGTA ATATTAATCGTCTATTCAGTGTTGGCGTGCGATGTGGCGAGGTGATGGTG TATGATGGCGGTATTGGTAATTTACTGCACTGATGTCGTTGGCCTCCTGC TATACTATCATCCAGACGATTTGTTGTCTCTTTTTGAGTTACTGTAGTGG TTGCGGAACAGGCCGCACCCTCCGCTCTCAGCAATCTACAAGATGCTCCG ACCCCCTGGCTACTGAGTCAAGCTCCCGATTGGGTTGGAGATCGCGATTC TGATGGGTCGACACTCTTCATTTGTGTGTGTGCTTTTGGTGATGTGTATT AAACGTGTGCCGCATGGGCGGCTTCGACGTGCTGATTTTACGTGAAACTG GACGGGACGAAGCAGCGGTTTTGGATCGACTGATTCAACAAGTAGCTAAA GAGCACCCGAAATCACACACTGGGTACCTCACACCAGGAGAAAGGCGTTG GGCTAGAACAAATCCGTTGGTTATCGCGTACAGCGGCGGCCTGGGCGTCT CTACGAGCATACATGCATATCACGCAGGCTACCTCAGAAACTGCTTCTTT ACCGTCAGGATAATTTTTTCCACGAGTCTATATTCGAGTCAAATCAGCGT ACTGGATTCGGATATAATTTTGTCGTGCGGGGCGTCCTGACCTGAGAGGC GATCTCAGTAGAGGACAGTCTGCATAAGCGACGAGTGTATTGGCACGTTC AGATCTGCTGCTGGCTAAGACATGGAAGGCTGCTGCAGTGGCTCGAAAAG TCCGCGAACTGGACCGACACCACACACCTTCCAGTACTACCTTGCCCACC GCTACAGACCCCAACTTCCTGAACCGCGGGTCTCCTGTAGTAGCCCATGC CAAGAGCTGCCACGGATGACGCACAATTCAGAAGATTGGTGCTTATGGGA CCGAGTACAGCCGCATCAAACGTTTGATTTCGGTCCAGTTTGCGGAGTTT TTGAGCGGTTGCAGCGACCCTAGATATCTCCTCCCCAGCAGCATATACTT CGAAGTATCAGAAGGCATGCCGACACACACGTCGCCTCTAGAGTTCTCTA AGTTGGAATCTCAGGTCTAGACTCGTGCGGCGGGAAGTTGGCTTTCGTGT TCAAGGCTCTTGTTGTCTTGGATTTGGTCTGAAAAATATGTACCGCCCTT GTCGGGCCACCCTTAGCTGCAAGAAATACCGATGGGAAATACGCAGGAGG AGGAGCAGGGAGCACCCAACTGAAAAGTTTTGACGCGATTTATTGCAGCC CCGACGTGGAGGGGTCCGAACGCGCGGGGGGTTGTGCCCTTTCAACGGTG ACCCGGAAATACGCCCGGGTTCTTTTGAGCACTGGTTCGATGGCTTCATG CGTAATCTAGGGTGGTGACACCACAGCAGACTACTTCGTTTGTGCTTTGC TGTCATGTTGCGTCGTCGCACAGCATGGCCATGGCCACCTCACTCGCCAC CGCTTGCAACCGTGTCGGCTGACTGTATCGTTTTGCTCGAATTCTTATGG AACAGGTGTATCACAAGCGGCGGGAGCAATCTGTCGATGACATGTTCTCG CACTCCACAGATGGGGCGAACAACCACTTCGAGTTGGACTTCGAGGTTCG GGCGACGTTTGACCGCGAAATGACCAAACTCACGGCTGCGGGGCTGCGCG TGCAGCGGCTAGTTTGCTCGCCGACAATGCAGCCAGAGATGAGAGTGCAA CTCGAGTCTCGCATCCTCGGAGATATGATAATCTTGTGAATAATGTTTTT CATGGTGCGTTCTGATGGCGGCTCGTGATATCGTCCACTCCCTAGGCGAG CCAGCCCATCCCGTATAAAATGATTTTAGCGTGCTTTGTCTTGCGGGCCG TGTGGTGTTGGCGTGCCTGTGTGTATGTAGCCGAGAGTGCATGCAATATC CCGGCTTTTAGATGCCAGCACTGGTTACTGTACATCTGTACGCCTAATTG TAAACTGTATTCGTTTGTGTGTCGTCCTTGTTCTTGATTCCATGGGCCTT GTTCATCCGTCTCTTTGGCATCCTTACCCCCCTCCAAGAGCTTTTCGACG CAGTAGATTTTCCGTGTTGGGGCCGTTGAAAGGCGGCTTAGTGTGGATAG ATTTATTTAAGCGGTAGATCGGGCGCCTTTTCCCATACTCCCGATATCGT CGCACCGTGTAGGTACGTAAGGTACCTAGCTTCAGATTTCGGAAGATCGA CTGAGAATAGTATTGACTTATTTCTTTGTCTCATGTCTCGTGTAAAATAC ACATATGGTACCTTCTTGGCGATTTCACTCACGAGGTTGGACCCTGGATG GCACTGATGGGCGCTGCGGCTGTCGCTGTGCGCCGTCACTTAAGCACGTG GCAATTTGTCTCGTATGTGTTGGTCTCACACATGTAGTATTCACCCACGG GTTTGTGACAGTTTTTCACCAAGTTGGTGTACAGTCACTCACGTCCAAAA TCACCGCAATCTGCCGCTGGAGCTTAGCTGCGGAAGCGTTTCAGCGTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig148:450342..459490+

>mRNA_P-littoralis_Contig148.127.1 ID=mRNA_P-littoralis_Contig148.127.1|Name=mRNA_P-littoralis_Contig148.127.1|organism=Pylaiella littoralis U1_48|type=CDS|length=867bp|location=Sequence derived from alignment at P-littoralis_Contig148:450342..459490+ (Pylaiella littoralis U1_48)
ATGAACGCCACCAGCATCGGCTACCAGGATGGTAGGGCTGGCGTTGCTGC
CGGACTTTGCGGGCGGTGGCCGTGGGGAAGCTCCGCTGCTGATGATGTTG
ACGGATCTCGATGGGCGAATCCAGGCAGCGAGGACGAAAGCGAGGCCTTC
ACCACGGGCGTACGCAGGATTTGGCAACGGCCTGCGACTGAAGGAAGCCT
GTCTAAAGATCTACCGAGACTGGCGCGAAGGGTGACAGTCAGAACACGCA
GGGATGGCGGCGTGTCGTCGCCTTGTCCTTCACAAGCCCAGGCAATGTGC
CCGGAGGAGACGTGGGGGGTGATTTCGCGCCTGACAACAGCCCTCGTGCG
CGAGCTGGAACCTGAGAGGCTGGCAGAGGTGGAGAGGGGACTCGCTGACA
TGGCGTCTAGAGTGACGGGCACAACCGACCTCGAAATGGTGGTGCCCGGG
CTCATCCGACTGCTGGGCGGGGACAGCAAAGCCCTGAGCGCCCTGAAGAT
GGTGGACCAGGGTGTGGTGCTGCTCGGAGTGCATCACATGAAGGGTAGTG
TCACGCGGGGGCTGCTAACGAAGGACGTGCGCTCGGCAGACGGTTGGCAA
ATCGGGATGGACGTGTTCGAGCAATACGTGCAGGTGTATCACAAGCGGCG
GGAGCAATCTGTCGATGACATGTTCTCGCACTCCACAGATGGGGCGAACA
ACCACTTCGAGTTGGACTTCGAGGTTCGGGCGACGTTTGACCGCGAAATG
ACCAAACTCACGGCTGCGGGGCTGCGCGTGCAGCGGCTAGTTTGCTCGCC
GACAATGCAGCCAGAGATGAGAGTGCAACTCGAGTCTCGCATCCTCGGAG
ATATGATAATCTTGTGA
back to top