mRNA_P-littoralis_Contig148.56.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 382 bits (981), Expect = 4.500e-129 Identity = 193/217 (88.94%), Postives = 205/217 (94.47%), Query Frame = 1
Query: 178 TQMFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
TQ+FLG+AATLIASSTAFVAPMAVRSA P +SSS+LKMS GSDYVATLPGAPFGDGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFW FSLLGMAFIEYNTI TAF+TPSAVTGEGGLKEDY PGDLGFDPL +KP+DE AL+VM+TKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct: 4 TQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 367 bits (941), Expect = 5.340e-123 Identity = 185/215 (86.05%), Postives = 200/215 (93.02%), Query Frame = 1
Query: 184 MFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
MFLGTAATLIASSTAFVAPMAVRSA P +S+S+LKMS GSDYVATLPGAPFGDGKIFDPL LSDGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTIT A+ PS VTGEGGL+++YSPGDLGFDPL +KP+D+ LE MQTKELNNGRLAMIGIAGMLVQELVNPADILG
Sbjct: 7 MFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 361 bits (927), Expect = 7.810e-121 Identity = 184/215 (85.58%), Postives = 197/215 (91.63%), Query Frame = 1
Query: 181 QMFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADIL 825
QMFLGTAA LIASSTAFVAP+AVRSA P +++S+LKMS GSDYVATLPGAPF DGKIFDPL LSDGAAPG+IKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFWAFSLLGMAFIEYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP E AL+VM+TKELNNGRLAMIGIAGML QELVN DIL
Sbjct: 5 QMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 325 bits (834), Expect = 7.300e-107 Identity = 167/215 (77.67%), Postives = 189/215 (87.91%), Query Frame = 1
Query: 184 MFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
MFLGTAATLIASS AFV PMAVRSA P +S+S+LKMS G+DY+ATLPGA +GKIFD L L+DGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FWA+SLLGMAFIEYNTI A+ PS VTGEGGL+++YSPGDLGFDP IKP+D+ LE MQ KELNNGRLAMIGI GMLVQELVN DILG
Sbjct: 7 MFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 309 bits (792), Expect = 6.490e-101 Identity = 168/216 (77.78%), Postives = 174/216 (80.56%), Query Frame = 1
Query: 181 QMFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
QMF+GTAATLIASSTAFVAPMAVRS T SS LKMS GSDYVATLPGAPF DGKIFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE FWAFSLLGMAFIEYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP DE AL+VM+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct: 5 QMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 304 bits (779), Expect = 6.820e-99 Identity = 146/161 (90.68%), Postives = 155/161 (96.27%), Query Frame = 1
Query: 346 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
+IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAF+EYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP DE AL+VM+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct: 36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 310 bits (795), Expect = 1.830e-98 Identity = 195/388 (50.26%), Postives = 205/388 (52.84%), Query Frame = 1
Query: 181 QMFLGTAATLIASSTAFVAPMAVRS-AVPTASSSSLKMSDGSDYVATLPGAPFGDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
QMF+GTAATLIASSTAFVAP+AVRS A+ T SSSSL MS GSDYVATLPGAPF DGK IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP DE AL+VM+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct: 5 QMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 274 bits (701), Expect = 2.080e-87 Identity = 133/160 (83.12%), Postives = 145/160 (90.62%), Query Frame = 1
Query: 346 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADIL 825
KIFDPLGL+DGA G+IK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFWAFSLL +A IEYNTIT A+ PS VTGEGGL+++YSPGDLGFDPL +KP D+ ALE MQTKELNNGRLAMIGIAG LVQELVNP +IL
Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 266 bits (681), Expect = 4.780e-83 Identity = 137/220 (62.27%), Postives = 169/220 (76.82%), Query Frame = 1
Query: 172 TTTQMFLGTAATLIASSTAFVAPMAVR-SAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
T+T +G A+ AS AF+ P SA PT S++ +MS GSDYV+TLPGAPF DGK++DP+GLS A P +IKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FWA +LL +A++EY I F VTGEGG++ DY PGDLGFDPLG+ P+DE L VM+TKELN+GRLAMIGI GM+VQELV P I G
Sbjct: 54 TSTGALVGMASWCFASCEAFIVPTPTTLSARPT--STAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 244 bits (624), Expect = 4.440e-75 Identity = 134/222 (60.36%), Postives = 169/222 (76.13%), Query Frame = 1
Query: 175 TTQMFLGTAATLIASSTAFVAPMAV-RSAVP-TASSSSLKMSDGSDYVATLPGAPFG---DGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADIL 825
T+Q+FLGTAATLIASS AFVAP+A RS++ A+SS+ KM+ GSDY A+LPGAPFG +GK FDP GL+ P IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+ YP FW SL +AFIE TI A+ T S VTG G LK +Y PGDLGFDPLG+ P+D E ++Q++EL+ GR AMIG+ GM+VQE+V+ IL
Sbjct: 3 TSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig148.56.1 >prot_P-littoralis_Contig148.56.1 ID=prot_P-littoralis_Contig148.56.1|Name=mRNA_P-littoralis_Contig148.56.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp MKSTTTQMFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVback to top mRNA from alignment at P-littoralis_Contig148:253224..257724+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig148.56.1 ID=mRNA_P-littoralis_Contig148.56.1|Name=mRNA_P-littoralis_Contig148.56.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4501bp|location=Sequence derived from alignment at P-littoralis_Contig148:253224..257724+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig148:253224..257724+ >mRNA_P-littoralis_Contig148.56.1 ID=mRNA_P-littoralis_Contig148.56.1|Name=mRNA_P-littoralis_Contig148.56.1|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig148:253224..257724+ (Pylaiella littoralis U1_48)back to top |