mRNA_P-littoralis_Contig148.56.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.56.1
Unique NamemRNA_P-littoralis_Contig148.56.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 4.500e-129
Identity = 193/217 (88.94%), Postives = 205/217 (94.47%), Query Frame = 1
Query:  178 TQMFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
            TQ+FLG+AATLIASSTAFVAPMAVRSA P +SSS+LKMS GSDYVATLPGAPFGDGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFW FSLLGMAFIEYNTI TAF+TPSAVTGEGGLKEDY PGDLGFDPL +KP+DE AL+VM+TKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct:    4 TQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220          
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 367 bits (941), Expect = 5.340e-123
Identity = 185/215 (86.05%), Postives = 200/215 (93.02%), Query Frame = 1
Query:  184 MFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
            MFLGTAATLIASSTAFVAPMAVRSA P +S+S+LKMS GSDYVATLPGAPFGDGKIFDPL LSDGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTIT A+  PS VTGEGGL+++YSPGDLGFDPL +KP+D+  LE MQTKELNNGRLAMIGIAGMLVQELVNPADILG
Sbjct:    7 MFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221          
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 7.810e-121
Identity = 184/215 (85.58%), Postives = 197/215 (91.63%), Query Frame = 1
Query:  181 QMFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADIL 825
            QMFLGTAA LIASSTAFVAP+AVRSA P +++S+LKMS GSDYVATLPGAPF DGKIFDPL LSDGAAPG+IKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFWAFSLLGMAFIEYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP  E AL+VM+TKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    5 QMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219          
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 7.300e-107
Identity = 167/215 (77.67%), Postives = 189/215 (87.91%), Query Frame = 1
Query:  184 MFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
            MFLGTAATLIASS AFV PMAVRSA P +S+S+LKMS G+DY+ATLPGA   +GKIFD L L+DGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDP  IKP+D+  LE MQ KELNNGRLAMIGI GMLVQELVN  DILG
Sbjct:    7 MFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218          
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 6.490e-101
Identity = 168/216 (77.78%), Postives = 174/216 (80.56%), Query Frame = 1
Query:  181 QMFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
            QMF+GTAATLIASSTAFVAPMAVRS   T SS  LKMS GSDYVATLPGAPF DGKIFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE                            FWAFSLLGMAFIEYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP DE AL+VM+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    5 QMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192          
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 6.820e-99
Identity = 146/161 (90.68%), Postives = 155/161 (96.27%), Query Frame = 1
Query:  346 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAF+EYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP DE AL+VM+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196          
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 310 bits (795), Expect = 1.830e-98
Identity = 195/388 (50.26%), Postives = 205/388 (52.84%), Query Frame = 1
Query:  181 QMFLGTAATLIASSTAFVAPMAVRS-AVPTASSSSLKMSDGSDYVATLPGAPFGDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
            QMF+GTAATLIASSTAFVAP+AVRS A+ T SSSSL MS GSDYVATLPGAPF DGK                                                                                                                                                                           IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP DE AL+VM+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    5 QMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392          
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 2.080e-87
Identity = 133/160 (83.12%), Postives = 145/160 (90.62%), Query Frame = 1
Query:  346 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADIL 825
            KIFDPLGL+DGA  G+IK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFWAFSLL +A IEYNTIT A+  PS VTGEGGL+++YSPGDLGFDPL +KP D+ ALE MQTKELNNGRLAMIGIAG LVQELVNP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174          
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 4.780e-83
Identity = 137/220 (62.27%), Postives = 169/220 (76.82%), Query Frame = 1
Query:  172 TTTQMFLGTAATLIASSTAFVAPMAVR-SAVPTASSSSLKMSDGSDYVATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 828
            T+T   +G A+   AS  AF+ P     SA PT  S++ +MS GSDYV+TLPGAPF DGK++DP+GLS  A P +IKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FWA +LL +A++EY  I   F     VTGEGG++ DY PGDLGFDPLG+ P+DE  L VM+TKELN+GRLAMIGI GM+VQELV P  I G
Sbjct:   54 TSTGALVGMASWCFASCEAFIVPTPTTLSARPT--STAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271          
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 4.440e-75
Identity = 134/222 (60.36%), Postives = 169/222 (76.13%), Query Frame = 1
Query:  175 TTQMFLGTAATLIASSTAFVAPMAV-RSAVP-TASSSSLKMSDGSDYVATLPGAPFG---DGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPADIL 825
            T+Q+FLGTAATLIASS AFVAP+A  RS++   A+SS+ KM+ GSDY A+LPGAPFG   +GK FDP GL+    P  IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  YP FW  SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPLG+ P+D E   ++Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    3 TSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI4.500e-12988.94Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI5.340e-12386.05Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI7.810e-12185.58Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI7.300e-10777.67Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE6.490e-10177.78LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7S5_ECTSI6.820e-9990.68Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE1.830e-9850.26LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q7_ECTSI2.080e-8783.13Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI4.780e-8362.27Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI4.440e-7560.36Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:253224..257724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7S3
PFAMsChloroa_b-bind
Model size1443
Max annot lvl2759|Eukaryota
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
Exons4
Evalue3.9e-136
EggNOG OGs2BEWM@1|root,2S15M@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
Cds size669
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.56.1prot_P-littoralis_Contig148.56.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 253386..257112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789698.752357-UTR-P-littoralis_Contig148:253223..2533851680789698.752357-UTR-P-littoralis_Contig148:253223..253385Pylaiella littoralis U1_48UTRP-littoralis_Contig148 253224..253385 +
1680789698.8087552-UTR-P-littoralis_Contig148:257112..2577241680789698.8087552-UTR-P-littoralis_Contig148:257112..257724Pylaiella littoralis U1_48UTRP-littoralis_Contig148 257113..257724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789698.7644022-CDS-P-littoralis_Contig148:253385..2535711680789698.7644022-CDS-P-littoralis_Contig148:253385..253571Pylaiella littoralis U1_48CDSP-littoralis_Contig148 253386..253571 +
1680789698.7729275-CDS-P-littoralis_Contig148:253796..2539191680789698.7729275-CDS-P-littoralis_Contig148:253796..253919Pylaiella littoralis U1_48CDSP-littoralis_Contig148 253797..253919 +
1680789698.7869904-CDS-P-littoralis_Contig148:256189..2562731680789698.7869904-CDS-P-littoralis_Contig148:256189..256273Pylaiella littoralis U1_48CDSP-littoralis_Contig148 256190..256273 +
1680789698.7980418-CDS-P-littoralis_Contig148:256836..2571121680789698.7980418-CDS-P-littoralis_Contig148:256836..257112Pylaiella littoralis U1_48CDSP-littoralis_Contig148 256837..257112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.56.1

>prot_P-littoralis_Contig148.56.1 ID=prot_P-littoralis_Contig148.56.1|Name=mRNA_P-littoralis_Contig148.56.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp
MKSTTTQMFLGTAATLIASSTAFVAPMAVRSAVPTASSSSLKMSDGSDYV
ATLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVL
VAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITT
AFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGR
LAMIGIAGMLVQELVNPADILG*
back to top

mRNA from alignment at P-littoralis_Contig148:253224..257724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.56.1 ID=mRNA_P-littoralis_Contig148.56.1|Name=mRNA_P-littoralis_Contig148.56.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4501bp|location=Sequence derived from alignment at P-littoralis_Contig148:253224..257724+ (Pylaiella littoralis U1_48)
CGTTGTGACGTTGTTTGAGAATGCTGAGTGAGAACAAAAGTCAGTTCTTG CCCACCGCCGAGTGACACACATCCACACATTCCTCAACGCTCGACGCACA CCCACACAGGTACACTCTCTAGCAGGCATATCTTTCTCCCCTCTCACACA CCCACAGGCAAGATGAAGTCCACGACTACCCAGATGTTCCTAGGAACCGC CGCCACCCTCATCGCCTCCTCCACAGCGTTCGTCGCGCCGATGGCGGTGC GATCCGCGGTGCCTACCGCGTCCTCGTCGAGCCTCAAGATGAGCGACGGA TCAGATTACGTCGCAACCCTCCCTGGCGCTCCCTTCGGCGACGGCAAGGT GAGCATGTCACAAGTCAGGTACCTACGTTGCAGCGTTGGCCACGAACAAC TGCAACGTCGGGCGACAGGCGTTGTGCTCGTTAACACAGTATCGTCGTGA TAAACGCGGTTACGATCGGCCATATGATTCAGTATCTCATTCGATCTCAT CTGTTTTCGTGTGTTCAATCCCGATCTCATTGATTTCCCCCACACGTTCA CGTCGTGACCGCTCTCGCCACAGATCTTTGACCCCCTCGGCCTCTCCGAT GGCGCTGCCCCCGGCGAGATCAAGAAATGGCGCGAGGCCGAGATCAAGCA CGGTCGCGTGGCCATGCTCGCATCACTCGGTGTCCTCGTGGCAGAGGTGA GCTACAAACAGCAGTACGTGTCGACAGCCCAATACACGAGCTTGACGTCT GGTGATGCCGTTGACCCTATCATTCATCATACCTGCGCTCATGACGGAAA CCTGAAAACGGAATTGGGGAAAATTGTGGCCGTGAAGTCGTTGGACAAGT TTTTTCTCGTTGTATTAATCCTGACTCTGTTGTTCTCATTTGTGTCTCCT CTACACTGCTGTAATGTGTTTGTGTTGAGCCGGCCGTCACTGACGAGGAT CTCTATCCCTAAGCCTCACATTTTCCTTTCGCGGTGCTTGCCGTCGATTC ATCTCGGAAGGGCTTAGACCACTTATTATAGCTGCAAAAACCCTCCTTAG AAAAGGCCTTTTTTGATCTTTGGCGGTTTGACCACTTGTTATAGATGGAA AAAACCCCTTTTTTGATCTCAACTTTTCTAATAACTTTTTTCGATCGACC CAATCGCTCAGAAAAATCACTTTTTCTAAGCGATTCGATCGATCAGAAAA CGCTTATTGAAAAAGTTTGGGCCCTCCTCACACAGCCTCTCTCTCACGAT GGGTCGGGTGACTTGAACAACTACATACAGCGGTATTATTTTTGCAAGCC TATCGATACCTCGCGGCCCCAGATGACCTACAGAGGAGAGGGACCAGACA CACAGCTCAAGGGCGATTGCTTTGTTGTTGCCGTGGGTTCAATCGTTCGA GAGCAATGGACGGAACTCAAAAGTAGTGTGGGGTGAGGGAGTAGAGCGGG CAGGAGGAGGGAGCCGCAGCAAGCAGCAGCAGCAGGTATTTGGTATTTTG GGCCGCTACATAAGTTTGGTTTTTCATCCATCACTCTCGAACCAATTGAG CCACAGTAATCCCAAAGCCATCGCCCGTGAGCTATGCCTCTGGTCCTTGT CCTCCGGTTGTCATCTAAGGCCGCAAGGTATCAACTGGCTAGCAATAGAG GCGTTGCAGAAACCGACGAGTTGTGAAAAAATTGAGAAGAAAGGCCGTTG AGTCCAGTAAAACATACTGCTGTATATATACTTCTGTACAGCAGTACAGA CAGACGGCGGAGATTTCTTCTCTTTTTTCACGAGTGATCGGTTTCTGCAA GAGCTAGATTGCTAGCCTATTGATGCCTTGCGGCACAAGATTACCAACGG AGGAGAGGGACAAGACACACTGCTCACGGTCGATGGCTTCGGTGTTGCTT TGGCTCAATTGGTTCGATAGTTATGGAAGAGAAACCAAACTGGTGTATCT GCGCAAAATACCTTGCTGCCCTGCTCCTGCTGCGGACTTCCTTCTCTTTT CCTATTTTTTTTCACACGTCATCGACGCCTGCACTCTTTTTTTGTGAGCC TGTTGATGCCTCGCGGCCTCAAAGGGCAATCAGAGATGCACGACCATACA CACAGCCTACGGAGCATGGCTTTGATATTGCTGTGGCTTCATTCATTCGA AAGTAATCAACAAATACGTTCCAGCAGCAGCAGCAGCAGCCTGTTGAAAC GATGTCAACACCGTCTGTCTGTAAAAAAAAATTAATCCCCCACGGAAAAA ATAAAATCAATCGCTGTTATAAGAAGTGGTGCTTTTCGAAGATCCTGTTG GAATTCTTCTTATTGAAAAAGGCGGATTCTAAGGAGATTGTTTTCAGCTA CAATAAGTGGTCTTAGCATGACTCCCTCGTTGAAAATCTACTCGATTTTT TTATTTTGTTATTGTATTTCCAATTGTTGGCTTCCCAATGCTGAGGCGGC GGTCATGCTGAAATAGGTCGCCCCGGTGGACTAGTGGTCCCCTCGTTAAC CACTAGATGCAGAGGAACGGGGGTTCGATTCCCGGTGAATGTGTTCCTTT GCTACTTTGAAAGCGGCTATGCTGTTAGTAAAAGCAGATTCGGCTTCGCC GACGAGGGTAGGGACCGCGGATCCCTGCTCGCGAGAAAAAATCTCGCGCA TGTACGGCAGAAGGAAGGTGGGAGTAACTCCTCCTGTGTTGACCTTCCTC CTGTGTGACCCCGTCGATGGGCCTAGCCTGTAGCTTGAACCGTAGGGTGC AGACTAGTGTGCCAGAGAATATGGGATGACAACATGTCCGAAGTTCCAAT TGGGGACTCGAATTCGTCACGTCCACCATCCAGCTGTTGGAAAACAAGCC CCCGGTTACACCGCAGCAACTGATAGTTATCACCCCACAAATGCACTGGA TCACACGTTGCCCACGTTACCTCCTGCCCAACTCGTCTCTCCCTTTTTTC GTTTCACACTCTGCAGGAGTACCACCCGTTCTTCATGGGCCCTGACTACA TCGGCCCCGCCGTGGACCACTTCCAGGAGATCTCTGCTCAGTACCCCGAG GTGAGGGTTGCTTCATCCGATGCAAAGGGAAGTCATTATTTTCGAGAGTG GAACGACATCCTATGGTTGTCATCGACAGATGGTAAAACACGGTTTGAAG TGGCAGTGATACTTGAGTAAAGTTGTAGCGGAACCAGCCGGTTGCGATAG ATTTGTCATGTCAACAAAATGTTTCCTCTCTACACAACCTGCGACGGACC AACAAATCTTGAACGCTCTGCGGTGACTCAGAAGTTGACTCGATTTCGCT GTATGTCTCCCGGTACATCCTAATCGACAACACAAGTAGGAACACGTGCA CTGGGCAGGTGGTGCTGTCGTGCGAGTTGGGACACACCCAGACTAAGTTG TAGTTTGTGCAGCATTTCGTGTAGCGGGATGGCCAACATTCTGCGGATGA ACAGCAACAGCAACACATGCTAAGTTGTGGCGAGACGTTTCTTGCCCCCA CTGACTCACTACTTATTTCGCTGTATTACACATCTTCTGGTGTCAAAACA ACCTTAAACCTGACTTGCCCCCTTCGTCTGCCTCCCCCACCTCCCTGATG ATGCCATTTGTAGTTCTGGGCCTTCTCTCTCCTAGGAATGGCGTTCATTG AGTACAACACCATCACGACCGCCTTTGATACCCCTAGCGCCGTGACCGGC GAGGGCGGCCTCAAGGAGGACTACAGCCCGGGAGACCTCGGCTTCGACCC CCTCGGCATCAAGCCCCAGGACGAGGAGGCCCTCGAAGTGATGCAGACCA AGGAGCTCAACAACGGCCGCCTCGCCATGATCGGCATCGCCGGCATGCTG GTGCAGGAGCTTGTCAACCCGGCCGACATCCTCGGCTAACTAAATTTATA TTCCACTCCCTCCGCAGGAGTTTGCGGCGACAGGAGTGGATTGAACAGGA TTCTGGTCAAATAGTATCGATATTTTACTCAGACGTCTAGACGATTGGTA CGGATCTGAGCTGTTCATGAATCCTCTCTCGACACACATGGCGTCGGGTT GTGAACACGTGACAATTTTGTTTGATGTTTCTTTCGTGTGGTGGTGTGAG ATTATAGAAAGTCTCTCCAGGTGCTGACCGTTTGCAGGATTACAACCATC CTTCACGGAATTGGTACATGAGGAGATTTTGTAGAAAGAGTAATGATTTC CGGTTTCGCTTGTACGTCGACAATACGTTATTTGTTGTGAGTCTTCGTAA TTTTGTCTACGATTGCGTTTTTCTTTCTGACCTGCGCCTGGCTAGCAGCA GCGCATTTTGTGGCACTCGGGTGTCTGATGAGATTGGTTGCTAACGGGTC AAGTCGAAGATTTTGTACAGATCTCCGCTGCTAGCGAGTTTCGATGACAG CATGAGGAACATTTTTGGGTCTTCCACGATGGAAGGCTTTTGTCATGGTT CCATGAAAGAGGTGCGGAAAAAACTTTTTGAAAAAAAATCACTTTATCGG A
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig148:253224..257724+

>mRNA_P-littoralis_Contig148.56.1 ID=mRNA_P-littoralis_Contig148.56.1|Name=mRNA_P-littoralis_Contig148.56.1|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig148:253224..257724+ (Pylaiella littoralis U1_48)
ATGAAGTCCACGACTACCCAGATGTTCCTAGGAACCGCCGCCACCCTCAT
CGCCTCCTCCACAGCGTTCGTCGCGCCGATGGCGGTGCGATCCGCGGTGC
CTACCGCGTCCTCGTCGAGCCTCAAGATGAGCGACGGATCAGATTACGTC
GCAACCCTCCCTGGCGCTCCCTTCGGCGACGGCAAGATCTTTGACCCCCT
CGGCCTCTCCGATGGCGCTGCCCCCGGCGAGATCAAGAAATGGCGCGAGG
CCGAGATCAAGCACGGTCGCGTGGCCATGCTCGCATCACTCGGTGTCCTC
GTGGCAGAGGAGTACCACCCGTTCTTCATGGGCCCTGACTACATCGGCCC
CGCCGTGGACCACTTCCAGGAGATCTCTGCTCAGTACCCCGAGTTCTGGG
CCTTCTCTCTCCTAGGAATGGCGTTCATTGAGTACAACACCATCACGACC
GCCTTTGATACCCCTAGCGCCGTGACCGGCGAGGGCGGCCTCAAGGAGGA
CTACAGCCCGGGAGACCTCGGCTTCGACCCCCTCGGCATCAAGCCCCAGG
ACGAGGAGGCCCTCGAAGTGATGCAGACCAAGGAGCTCAACAACGGCCGC
CTCGCCATGATCGGCATCGCCGGCATGCTGGTGCAGGAGCTTGTCAACCC
GGCCGACATCCTCGGCTAA
back to top