prot_P-littoralis_Contig148.54.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig148.54.1
Unique Nameprot_P-littoralis_Contig148.54.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length246
Homology
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 5.730e-42
Identity = 87/121 (71.90%), Postives = 97/121 (80.17%), Query Frame = 0
Query:    6 AVTLIASSSAFVAPMAVRSVAPASSSSSLKIQTTGSAYIATLPHAPFSR-QIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHTFLLGLDDIGPAVDHFQEISARFPEF 125
            A TLIASS+AFVAPMAVRS APASSSS+LK+ + GS Y+ATLP APF   +IF    LSDGADP DIKKW   EIKH RVAM ASLGVLVAE+YH   +G D IGPAVDHFQEISA++PEF
Sbjct:   11 AATLIASSTAFVAPMAVRSAAPASSSSALKM-SAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEF 130          
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 8.250e-39
Identity = 83/126 (65.87%), Postives = 98/126 (77.78%), Query Frame = 0
Query:    1 MLHSTAVTLIASSSAFVAPMAVRSVAPASSSSSLKIQTTGSAYIATLPHAPFSR-QIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHTFLLGLDDIGPAVDHFQEISARFPEF 125
            M   TA TLIASS+AFVAPMAVRS APASS+S+LK+ + GS Y+ATLP APF   +IF    LSDGA+P +IK W   EIKH RVAM A++GV+VAE+YH   +G D IGPAVDHFQEISA+FPEF
Sbjct:    7 MFLGTAATLIASSTAFVAPMAVRSAAPASSASALKM-SAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEF 131          
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.260e-38
Identity = 84/126 (66.67%), Postives = 97/126 (76.98%), Query Frame = 0
Query:    1 MLHSTAVTLIASSSAFVAPMAVRSVAPASSSSSLKIQTTGSAYIATLPHAPFSR-QIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHTFLLGLDDIGPAVDHFQEISARFPEF 125
            M   TA  LIASS+AFVAP+AVRS APAS++S+LK+ + GS Y+ATLP APFS  +IF    LSDGA P DIKKW   EIKH RVAM ASLG+LVAEEYH   +G D IGPA+ HFQEISA+FPEF
Sbjct:    6 MFLGTAAALIASSTAFVAPVAVRSAAPASAASALKM-SAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEF 130          
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 7.400e-36
Identity = 78/125 (62.40%), Postives = 97/125 (77.60%), Query Frame = 0
Query:    1 MLHSTAVTLIASSSAFVAPMAVRSVAPASSSSSLKIQTTGSAYIATLPHAPFSRQIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHTFLLGLDDIGPAVDHFQEISARFPEF 125
            M   TA TLIASS+AFV PMAVRS APASS+S+LK+ + G+ Y+ATLP A  + +IF    L+DGADP +IK W   EIKH RVAM A++GV+VAE+YH F +G D IGPAVDHFQEI+A+FP+F
Sbjct:    7 MFLGTAATLIASSAAFVTPMAVRSAAPASSASALKM-SAGTDYLATLPGA--NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQF 128          
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.370e-23
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 0
Query:   55 QIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHTFLLGLDDIGPAVDHFQEISARFPEF 125
            QIF    LSDGA P DIKKW   EIKH RVAM ASLGV+VAE+YH F +G D IGPAVDHFQEISA+FPEF
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEF 106          
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.230e-23
Identity = 57/95 (60.00%), Postives = 65/95 (68.42%), Query Frame = 0
Query:   39 TGSAYIATLPHAPFSRQIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHTFLLGLDDIGPAVDHFQEISARFPEFRTSFLISI 133
            T S Y+ T    P   +IF    L+DGA+  DIK W   EIKH RVAM ASLGVLVAEEYH F +G D IGPAVDHFQEISARFPEF    L+++
Sbjct:    2 TSSLYVGTRSLLP---KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLAL 93          
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.660e-22
Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 0
Query:    1 MLHSTAVTLIASSSAFVAPMAVRSVAPASSSSSLKIQTTGSAYIATLPHAPFSR-QIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHTFLLGL 105
            M   TA TLIASS+AFVAPMAVRSV    SS  LK+ + GS Y+ATLP APFS  +IF    LSDGA P DIKKW   EIKH RVAM ASLGV+VAE +   LLG+
Sbjct:    6 MFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKM-SAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEFWAFSLLGM 110          
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.750e-22
Identity = 62/125 (49.60%), Postives = 82/125 (65.60%), Query Frame = 0
Query:   11 ASSSAFVAPMAVR-SVAPASSSSSLKIQTTGSAYIATLPHAPFSR-QIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHTFLLGLDDIGPAVDHFQEISARFPEFRTSFLISI 133
            AS  AF+ P     S  P S+++ +   + GS Y++TLP APF+  +++    LS  ADP DIKKW   EIKH RVAM AS+GVLVAE +H   LG D IGPA+ HF+EI+ARFP+F    L++I
Sbjct:   68 ASCEAFIVPTPTTLSARPTSTAARM---SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAI 189          
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.720e-22
Identity = 68/110 (61.82%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    1 MLHSTAVTLIASSSAFVAPMAVRSVAPASSSSSLKIQTTGSAYIATLPHAPFSR-QIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEE-YHTFLLGLDDI 108
            M   TA TLIASS+AFV PMA+RSVA   SSS  K+ + GS Y+ATLP APFS  +IF    LSDGA P DIKKW   EIKH RVAM ASLGV+VAEE Y    LG D +
Sbjct:    6 MFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKM-SAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEEDYMPGDLGFDPL 114          
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.060e-21
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 0
Query:   55 QIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHTFLLGLDDIGPAVDHFQEISARFPEF 125
            QIF    LSDGA P DIKKW   EIKH RVAM ASLGV+VAE+YH F +G D IGPAVDHFQEISA+FPEF
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEF 302          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.54.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI5.730e-4271.90Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI8.250e-3965.87Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI1.260e-3866.67Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI7.400e-3662.40Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI3.370e-2373.24Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI4.230e-2360.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE1.660e-2263.21LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G5B4_ECTSI1.750e-2249.60Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JYI8_9PHAE2.720e-2261.82LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JWB4_9PHAE1.060e-2173.24LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..205
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 55..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:247196..252798 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.54.1mRNA_P-littoralis_Contig148.54.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig148 246582..253104 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig148.54.1 ID=prot_P-littoralis_Contig148.54.1|Name=mRNA_P-littoralis_Contig148.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
MLHSTAVTLIASSSAFVAPMAVRSVAPASSSSSLKIQTTGSAYIATLPHA
PFSRQIFGTPRLSDGADPIDIKKWLGTEIKHKRVAMPASLGVLVAEEYHT
FLLGLDDIGPAVDHFQEISARFPEFRTSFLISIIHRVQRHYQGVRVAQRR
DRRGRPQGGLQLGRPRLRPPEHQVQVRGVVHPHADQGAQQRAPNHDQHRW
HAGSRAGQSGQPLRLYFGKIFLFLRRKTNLFDGRVRMSFYNSGHG*
back to top