mRNA_P-littoralis_Contig148.51.3 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 365 bits (938), Expect = 1.230e-120 Identity = 179/219 (81.74%), Postives = 203/219 (92.69%), Query Frame = 3
Query: 138 ISTQMFLGTAATLIASSSAFVAPMAVRSVAPTASSPSLKMSTGSDYVASLPGAPFSDGKIFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADILG 794
++TQ+FLG+AATLIASS+AFVAPMAVRS AP +SS +LKMS GSDYVA+LPGAPF DGKIFDPL L+DGA+ D+K WREAE+KHGRVAMLA+LG+LVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFW FSLLGMAFIEYNTI TA+ +PSAVTGEGGLKEDY PGDLGFDPLN+KP+ + AL+VM+TKELNNGRLAMIG+AGMLVQEL+NPADILG
Sbjct: 2 VATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 363 bits (931), Expect = 1.440e-119 Identity = 180/221 (81.45%), Postives = 200/221 (90.50%), Query Frame = 3
Query: 132 MSISTQMFLGTAATLIASSSAFVAPMAVRSVAPTASSPSLKMSTGSDYVASLPGAPFSDGKIFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADILG 794
M S+ MFLGTAATLIASS+AFVAPMAVRS AP +S+ +LKMS GSDYVA+LPGAPF DGKIFDPL L+DGA ++KLWREAE+KHGRVAMLA +G++VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTIT AYA PS VTGEGGL+++YSPGDLGFDPLN+KPK Q LE MQTKELNNGRLAMIG+AGMLVQELVNPADILG
Sbjct: 1 MVASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 346 bits (888), Expect = 4.710e-113 Identity = 174/223 (78.03%), Postives = 198/223 (88.79%), Query Frame = 3
Query: 138 ISTQMFLGTAATLIASSSAFVAPMAVRSVAPTASSPSLKMSTGSDYVASLPGAPFSDGKIFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADILG*FLF 806
+++QMFLGTAA LIASS+AFVAP+AVRS AP +++ +LKMS GSDYVA+LPGAPFSDGKIFDPL L+DGA D+K WREAE+KHGRVAMLA+LGILVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFWAFSLLGMAFIEYNTI TA+ +PSAVTGEGGLKEDY PGDLGFDPLN+KP + AL+VM+TKELNNGRLAMIG+AGML QELVN DIL F F
Sbjct: 2 VASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 224
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 328 bits (841), Expect = 4.360e-106 Identity = 165/221 (74.66%), Postives = 192/221 (86.88%), Query Frame = 3
Query: 132 MSISTQMFLGTAATLIASSSAFVAPMAVRSVAPTASSPSLKMSTGSDYVASLPGAPFSDGKIFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADILG 794
M+ S+ MFLGTAATLIASS+AFV PMAVRS AP +S+ +LKMS G+DY+A+LPGA +GKIFD L LADGA+ ++KLWREAE+KHGRVAMLA +G++VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FWA+SLLGMAFIEYNTI AYA PS VTGEGGL+++YSPGDLGFDP IKPK Q LE MQ KELNNGRLAMIG+ GMLVQELVN DILG
Sbjct: 1 MAASSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 295 bits (755), Expect = 1.340e-93 Identity = 156/219 (71.23%), Postives = 175/219 (79.91%), Query Frame = 3
Query: 138 ISTQMFLGTAATLIASSSAFVAPMAVRSVAPTASSPSLKMSTGSDYVASLPGAPFSDGKIFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADILG 794
+++QMF+GTAATLIASS+AFVAPMAVRSV T SSP LKMS GSDYVA+LPGAPFSDGKIFDPLGL+DGA D+K WREAE+KHGRVAMLA+LG++VAE FWAFSLLGMAFIEYNTI TA+ +PSAVTGEGGLKEDY PGDLGFDPLN+KP + AL+VM+TKELNNGRLAMIG+AGML QELVNPADILG
Sbjct: 2 VASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 285 bits (729), Expect = 1.170e-89 Identity = 133/161 (82.61%), Postives = 150/161 (93.17%), Query Frame = 3
Query: 312 KIFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADILG 794
+IFDPLGL+DGA D+K WREAE+KHGRVAMLA+LG++VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAF+EYNTI TA+ +PSAVTGEGGLKEDY PGDLGFDPLN+KP + AL+VM+TKELNNGRLAMIG+AGML QELVNPADILG
Sbjct: 36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 283 bits (725), Expect = 2.500e-89 Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 3
Query: 312 KIFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADIL 791
KIFDPLGLADGA V D+KLWREAE+KHGRVAMLA+LG+LVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFWAFSLL +A IEYNTIT AYA PS VTGEGGL+++YSPGDLGFDPLN+KP Q ALE MQTKELNNGRLAMIG+AG LVQELVNP +IL
Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 290 bits (742), Expect = 8.400e-89 Identity = 181/391 (46.29%), Postives = 203/391 (51.92%), Query Frame = 3
Query: 138 ISTQMFLGTAATLIASSSAFVAPMAVRSVA-PTASSPSLKMSTGSDYVASLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADILG 794
+++QMF+GTAATLIASS+AFVAP+AVRSVA T SS SL MS GSDYVA+LPGAPFSDGK IFDPLGL+DGA D+K WREAE+KHGRVAMLA+LG++VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTI TA+ +PSAVTGEGGLKEDY PGDLGFDPLN+KP + AL+VM+TKELNNGRLAMIG+AGML QELVNPADILG
Sbjct: 2 VASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 257 bits (656), Expect = 1.030e-77 Identity = 126/223 (56.50%), Postives = 168/223 (75.34%), Query Frame = 3
Query: 129 MMSISTQMFLGTAATLIASSSAFVAPMAVR-SVAPTASSPSLKMSTGSDYVASLPGAPFSDGKIFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADILG 794
+M ST +G A+ AS AF+ P S PT S + +MS GSDYV++LPGAPF+DGK++DP+GL+ A+ +D+K WREAE+KHGRVAMLA++G+LVAE +HP F+GPDYIGPA+ HF+EI+A++P+FWA +LL +A++EY I +A VTGEGG++ DY PGDLGFDPL + P+ + L VM+TKELN+GRLAMIG+ GM+VQELV P I G
Sbjct: 51 VMVTSTGALVGMASWCFASCEAFIVPTPTTLSARPT--STAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 243 bits (621), Expect = 4.200e-73 Identity = 132/223 (59.19%), Postives = 167/223 (74.89%), Query Frame = 3
Query: 138 ISTQMFLGTAATLIASSSAFVAPMAV--RSVAPTASSPSLKMSTGSDYVASLPGAPF---SDGKIFDPLGLADGANVKDVKLWREAELKHGRVAMLAALGILVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAYASPSAVTGEGGLKEDYSPGDLGFDPLNIKPKSQEALEVMQTKELNNGRLAMIGVAGMLVQELVNPADIL 791
+++Q+FLGTAATLIASS+AFVAP+A S+A A+S + KM+ GSDY ASLPGAPF ++GK FDP GLA + + +K WREAELKHGRV+MLAA+GILV+E +HP FMGP YIGPAV+H Q+I+ YP FW SL +AFIE TI A+ + S VTG G LK +Y PGDLGFDPL + PK E ++Q++EL+ GR AMIGV GM+VQE+V+ IL
Sbjct: 2 VTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.51.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig148.51.3 >prot_P-littoralis_Contig148.51.3 ID=prot_P-littoralis_Contig148.51.3|Name=mRNA_P-littoralis_Contig148.51.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp MMSISTQMFLGTAATLIASSSAFVAPMAVRSVAPTASSPSLKMSTGSDYVback to top mRNA from alignment at P-littoralis_Contig148:236441..240198- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig148.51.3 ID=mRNA_P-littoralis_Contig148.51.3|Name=mRNA_P-littoralis_Contig148.51.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3758bp|location=Sequence derived from alignment at P-littoralis_Contig148:236441..240198- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig148:236441..240198- >mRNA_P-littoralis_Contig148.51.3 ID=mRNA_P-littoralis_Contig148.51.3|Name=mRNA_P-littoralis_Contig148.51.3|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig148:236441..240198- (Pylaiella littoralis U1_48)back to top |