mRNA_P-littoralis_Contig148.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.50.1
Unique NamemRNA_P-littoralis_Contig148.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: A0A6H5KD56_9PHAE (SufE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD56_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 1.100e-135
Identity = 243/324 (75.00%), Postives = 267/324 (82.41%), Query Frame = 1
Query:   64 MIARAALLLAALATSVCSVGQAFVTSNVAVGSAAGGSFSDRAAAVAAPTXXXXXXXXXXAAESARPRRTSLLMSTSTDLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELKDGLIYYYTDSNAMITKGLASLL-AMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALALGGESALRAALEDATPAEEPVK-EEPKESGAITARIVEKLQALEPLQLEIVDDSGGEESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKIVHAVTLVTKTPEEAGM 1029
            M+ARAA+L  AL+TSVCSVG++FVT NVAV    GG+FS   AA AA +     XXXXX       R  + LMSTSTDLK+LGLTPELER+TK+FR CPTDKMRQMQLLHL QMGDKMDP LQTE+NKVLGCLSTVYVAAE+KDGLIYY TDS+AMITKG A LL AMGLSGN PEAIQ VKPEFIQVAGLQASL AGRNNGFINML+TMKGKALALGGESA+RAA+E A PA E    EE +ESG + +R+ EKLQ LEPL+L I D+SGGEESK  I IVSKSFEG+  LKRHRSVYGLMADEMKIVHAVTL TKTPEEAGM
Sbjct:    1 MVARAAILSVALSTSVCSVGESFVTPNVAV--VPGGAFSSHRAAQAARSRRPAAXXXXXXRSG---RDDAPLMSTSTDLKQLGLTPELERLTKVFRSCPTDKMRQMQLLHLTQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKGSARLLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLAAGRNNGFINMLRTMKGKALALGGESAIRAAMEQAAPAAETAAPEEAEESGTMASRVTEKLQKLEPLKLVIEDESGGEESKFMIKIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEAGM 319          
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: A0A836CLM4_9STRA (Cysteine desulfuration protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM4_9STRA)

HSP 1 Score: 224 bits (571), Expect = 4.260e-63
Identity = 137/276 (49.64%), Postives = 172/276 (62.32%), Query Frame = 1
Query:  250 SARPRRTSLLMSTSTDLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELKDGLIYYYTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALALGGESALRAAL----------------EDATPAEEPVKEEPKESGAITARIVEKLQALEPLQLEIVDDSGGEESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKIVHAVTLVTKTPEEAGM 1029
            SAR R   LLMST+  ++ELGLT ELER+ K FR  P DKMR  QLL +A  G ++  + +T  NKV GCLSTV+V A++K G +Y+  DS+A +TKGL S+L  GLSGN    IQ VKPEFIQVAGLQ SLT GRNNGFINML TMK KAL                            +D   AE P K        +T  I+ KLQAL P++L++ D+S  +E K  I++VS +FEG+  +KRH+ V+  +ADEMK VHAV L TKTP E G+
Sbjct:   51 SARRRAAPLLMSTAPSIQELGLTRELERLVKAFRSMPDDKMRYKQLLFMAAQGAELPSEFKTTDNKVQGCLSTVHVVAKMKQGKVYFEGDSDAQLTKGLLSILIRGLSGNAAADIQSVKPEFIQVAGLQTSLTPGRNNGFINMLSTMKRKALQAEXXXXXXXXXXXXXXXXXXXXADSEGDDMGVAEVPGK-------PMTTAIMRKLQALRPVRLQVEDESE-DEQKFYIAVVSSAFEGLPLVKRHQLVHLTIADEMKQVHAVQLSTKTPAEMGL 318          
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: M2XAG5_GALSU (Cysteine desulfuration protein SufE (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAG5_GALSU)

HSP 1 Score: 176 bits (446), Expect = 1.660e-45
Identity = 115/268 (42.91%), Postives = 156/268 (58.21%), Query Frame = 1
Query:  274 LLMSTSTDLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELKDGLIYYYTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALA----LGGESALRAALEDATPAEE--PVKEEPKESGAITARIVEKLQALEPLQLEIVDDS------------GGEESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKI-VHAVTLVTKTPEE 1020
            L +    D K+LGLTPEL R+ K F   P  K+R  QLL+LAQ  + +    +T +NKV GCLSTV+V  +  +  I++  DS+A +TKGL +LL  GL+G   E I+R+ PEF+ VAGL  SLT GRNNGF+NML+TMK KA      L G S       D  P  +  P   E   SG I + IVEKLQ L+P +LE+ DDS               E+  ++ +VS +F G+  +KRH+ VY L+  E+K  +HA+ +  KTP E
Sbjct:   57 LQIRCQVDEKKLGLTPELARLVKSFAAAPDPKLRVQQLLYLAQTLEPLPFQYKTNENKVPGCLSTVHVVGDCDNEKIFFKGDSDAQLTKGLLALLIKGLNGCTVEEIERISPEFVTVAGLSVSLTPGRNNGFLNMLQTMKNKAKEAASKLNGVSREGRNYSDRVPKTQASPSTAETA-SGPIYSAIVEKLQKLKPSRLEVHDDSFQHAGHVGAKGLRSSETHFSVYVVSDAFVGLSLVKRHQLVYTLLGQELKEGLHALRIQAKTPSE 323          
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: A0A7S1T9Y1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T9Y1_9RHOD)

HSP 1 Score: 174 bits (442), Expect = 2.620e-45
Identity = 113/255 (44.31%), Postives = 149/255 (58.43%), Query Frame = 1
Query:  295 DLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELK-DGLIYYYTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALALGGESALRAALEDATPAEEPVKEE--PKESGAITARIVEKLQALEPLQLEIVDDS-----------GGEESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKI-VHAVTLVTKTP 1014
            +L  LGLTPELER+T+ F   P  KMR  QLL +AQ    MD  L T +NKV GCLSTVYV A    DG ++   DS+A +TKGL +LL  GL G   E I+RV PEFIQ +GL  SLT GRNNGF+NML  +K KA A      + + +E  +   +PV E   P ++G I  RI +KL  L+P +L I D S              E+  +I I S +FE +  ++RHR +Y L+A E+   VHA+ +  +TP
Sbjct:   46 ELDALGLTPELERLTRQFSMVPDPKMRYQQLLFMAQELPSMDTSLMTSENKVPGCLSTVYVHASRNGDGTVHLVGDSDAQLTKGLIALLIQGLDGKTVEEIERVSPEFIQASGLAVSLTPGRNNGFLNMLAKIKAKARA-----CIDSPVEVLSATPDPVVERNIPPDAGPIYRRIAQKLSVLKPTELVISDKSKQHSGHPGNLQAKTETHFSIRIRSTAFEPLTPVQRHRVIYTLLAQELNDGVHALQIDAQTP 295          
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: A0A7S2ZLB0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLB0_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 8.630e-43
Identity = 109/269 (40.52%), Postives = 152/269 (56.51%), Query Frame = 1
Query:  256 RPRRTSLLMSTSTDLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELKDGL--IYYYTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALALGGESALRAALEDATPAEEPVKEEPKESGAITARIVEKLQALEPLQLEIVDDS--------GGEESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKI----VHAVTLVTKTPEE 1020
            R R  +++ +   ++  L LTP LE+M    +  P  K+R  QLLH A     M+P+L+TE NKV GCLSTV+V AE+      +Y+  DS+A +TKGL S+L  GLSG+    I++V P+FI+ +GL  SLT GRNNGFINMLK MK KA  L  E+A           E+ V+ E       TA I   L  L P++LE+ D S         G+E+ + I +VS++FE M  + RH+ +Y L+   M      VHA+ + TK P E
Sbjct:   23 RKRLGTIMTAADVEMSSLNLTPALEKMVSSLKMFPDSKVRYQQLLHYASTLGPMEPELKTEMNKVPGCLSTVFVHAEMNPDTRKVYFKGDSDAQLTKGLVSMLVNGLSGSTALQIEKVNPDFIKASGLTVSLTPGRNNGFINMLKLMKRKAAVLDEEAAGLGPRSTGQTDEDAVEFEVPGKPRATA-IGRALMQLNPIELEVEDFSESHKGHAHAGDETHIRIKVVSEAFEDMPLVLRHKVIYTLLDSFMDKGSGGVHALQMDTKAPGE 290          
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: A0A7S3Q629_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q629_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.220e-41
Identity = 103/274 (37.59%), Postives = 156/274 (56.93%), Query Frame = 1
Query:  274 LLMSTSTDLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELKDG-----LIYYYTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALAL-------GGESALRAALEDATPAEEPVKEEPKESGAITARIVEKLQALEPLQLEIVDDSGGE-------------ESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKIVHAVTLVTKTPEE 1020
            L M+ +++++ LGLTPELE+MTK F   P +K+R  QLL++A     +DP L   +NKV GCLSTVYV    +D      ++ +  DS+  +TKGL +LL  G+SG   E IQ+V PEFI  A +  SLT GRNNGF+NML  MK KA +        GGE A  A  E    + + +  +P  +      ++E L  L+P+ LE++DDS                ES   +++V++ F+GM  +KRH+ +Y ++ + M  +HA+++  K P +
Sbjct:   48 LSMADTSEIEALGLTPELEKMTKAFGSIPDEKLRYKQLLYMANQLKPLDPKLMVSENKVPGCLSTVYVDCTARDNEEGETVLDFVGDSDGQLTKGLVALLVRGMSGCTAEQIQKVDPEFINAAKITQSLTPGRNNGFLNMLAVMKAKATSYSVGADNSGGEEA-DADTEGVISSFDEIAGKPMYND-----MMESLLKLKPVTLELIDDSASHAGHAGSKGWEESGESHFVLNMVAEVFDGMPLVKRHQLIYLVLGETMDKIHALSINAKAPSQ 315          
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: A0A4D9DCV6_9STRA (SufE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCV6_9STRA)

HSP 1 Score: 162 bits (411), Expect = 6.290e-41
Identity = 106/267 (39.70%), Postives = 155/267 (58.05%), Query Frame = 1
Query:  262 RRTSLLMSTSTDLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELKDGLIYYYTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALALGGESALRAALEDATPAEEPVKEEPKESGAITARIVEKL-QALEPLQLEIVDDSG-----------GEESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKIVHAVTLVTKTPEEAG 1026
            + T+ + ST  D   LGLTP L  +++ F+    ++ R   LL LA     M    +  +NKV GCLSTVYV A ++DG +Y+  DS+A +TKGL +LL  G+SG   E IQ VKPEFI+ AG+ ASLT GRNNGF+NML  +K KA+    +       E A   +E +      +  + +  ++KL   L+P +LE+ DDS            G ES  ++ IV+  FEG+  ++RH+ VY ++A EM+ +HA+++  KTP EAG
Sbjct:   51 KTTTYMSSTDIDESSLGLTPRLFEVSRAFQ-LMDERTRVQNLLALASSMKPMKDFRKLPENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDI------ARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG 310          
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: A0A1Z5K9T0_FISSO (SufE domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T0_FISSO)

HSP 1 Score: 157 bits (397), Expect = 1.720e-39
Identity = 109/260 (41.92%), Postives = 144/260 (55.38%), Query Frame = 1
Query:  286 TSTDLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYV---AAELKDGLIY--YYTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALALGGESALRAALEDATPAEEPVKEEPKESGAITARIVEKLQALEPLQLEIVD----------DSGGEESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKIVHAVTLVTKTPEE 1020
            T TD   + LTPEL ++   F     DK+R  QLL++A     +DP     +NKV GCLSTVYV   A +  DG+I   +  DS+ ++TKGL +LL  GLSGN  E IQ V P FIQ  G+ ASLT GRNNGF+NML  MK KA        L A  +   P+E        E     A IV+ LQAL+P+ L++ D           S   E+   + IV+ +FEG+  +KRH+ VY L+ D M  +HA+ +  KTPEE
Sbjct:   16 THTD-NPMRLTPELLKIANAFESIGDDKLRYKQLLYMATQLSPIDPSQAIPENKVPGCLSTVYVDGTAVDKGDGVIRIEFVGDSDGLLTKGLVALLVRGLSGNTAEDIQNVDPGFIQKTGIAASLTPGRNNGFLNMLNVMKIKA------KQLEANYQATGPSESATTTAGDEKPMYQA-IVQGLQALKPVSLKLEDVSYQHAGHREASKDGETHFNLEIVASAFEGLNLVKRHKLVYMLLGDVMPRIHALQISAKTPEE 267          
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: A0A7S0BG18_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BG18_9RHOD)

HSP 1 Score: 156 bits (395), Expect = 5.490e-39
Identity = 108/270 (40.00%), Postives = 149/270 (55.19%), Query Frame = 1
Query:  256 RPRRTSLLMSTSTDLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELKDGL--IYYYTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALALGGESA-LRAALEDATPAEEPVKEEPKESGAITARIVEKLQALEPLQLEIVDDS--------GGEESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKI----VHAVTLVTKTPEE 1020
            R R  ++L +   ++  L LTP LE+M    +  P  K+R  QLLH A     M+P+L+TE NKV GCLSTV+V A +      +Y+  DS+A +TKGL S+L  GLSG+    IQ+V PEFI+ +GL  SLT GRNNGF+NMLK MK KA  L  E+A L    +  T  +    E P +  A    I   L  L P +LE+ D S         G+E+ + I +VS +F+ M  + RH+ +Y L+   M      VHA+ +  K P E
Sbjct:   23 RKRTGTVLTAADVEMSSLNLTPALEKMVSSLKIFPDSKVRYQQLLHYATTLGPMEPELKTEANKVPGCLSTVFVHAVINPDTRKVYFKGDSDAQLTKGLVSMLVNGLSGSTALQIQKVNPEFIKSSGLTVSLTPGRNNGFMNMLKLMKHKAELLDEEAAGLGPGSKGQTDGDAVEFEVPGKPRATA--IGRALMQLNPTELEVEDFSESHKGHAHAGDETHIRIKVVSDAFQDMSLVLRHKVIYKLLDSFMDKGDGGVHALQIDAKAPAE 290          
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Match: A0A7S2NSI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSI8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 6.760e-39
Identity = 101/265 (38.11%), Postives = 149/265 (56.23%), Query Frame = 1
Query:  280 MSTSTDLKELGLTPELERMTKMFRKCPTDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELKDGL----IYYYTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRNNGFINMLKTMKGKALALGGESALRAALEDATPAEEPVK---EEPKESGAITARIVEKLQALEPLQLEIVDDS-------GGE----ESKLTISIVSKSFEGMMSLKRHRSVYGLMADEMKIVHAVTLVTKTPEE 1020
            M TS+ L    LTPELE MT  F + P +K+R  QL+ LAQ    M  +L+ + NKV GCLSTV+V A L D +    + Y  DS+ ++TKGL +LL  GLSGN  E I +V P+F+  AG+ ASLT GRNNGF+NML TMK +A  +   +   A  E    +   +    +E +      A +   +  L+P  + +VD+S       G +    ES   + IV++ F+G+  +KRH+ +Y ++ + M  +HA+ +   TPEE
Sbjct:   27 MVTSSALNAENLTPELEMMTAAFARMPDEKLRYKQLMFLAQKLAPMPDNLKIDANKVPGCLSTVHVHATLDDSVEPPVVNYTGDSDGILTKGLVALLVRGLSGNTAEVIDKVTPDFVNTAGISASLTPGRNNGFLNMLATMKKQANEVTAGATTTATNEXXEISSASIVTSFDEQEGRPMYNAMMSTLINFLKPTSINLVDNSHQHAGHAGSKGYDGESHFELEIVAECFDGLALVKRHQLIYTILGEIMPKIHALQIKANTPEE 291          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD56_9PHAE1.100e-13575.00SufE domain-containing protein n=3 Tax=Ectocarpus ... [more]
A0A836CLM4_9STRA4.260e-6349.64Cysteine desulfuration protein n=1 Tax=Tribonema m... [more]
M2XAG5_GALSU1.660e-4542.91Cysteine desulfuration protein SufE (Plastid) n=1 ... [more]
A0A7S1T9Y1_9RHOD2.620e-4544.31Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2ZLB0_9RHOD8.630e-4340.52Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3Q629_9STRA2.220e-4137.59Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A4D9DCV6_9STRA6.290e-4139.70SufE domain-containing protein n=2 Tax=Monodopsida... [more]
A0A1Z5K9T0_FISSO1.720e-3941.92SufE domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S0BG18_9RHOD5.490e-3940.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2NSI8_9STRA6.760e-3938.11Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:230236..236272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7R0
Preferred namebola1
PFAMsBolA,SufE
Model size2467
Max annot lvl2759|Eukaryota
KEGG koko:K22066
Hectar predicted targeting categorychloroplast
Exons4
Evalue1.06e-152
EggNOG OGsCOG0271@1|root,KOG2313@2759|Eukaryota
Ec32 ortholog descriptioncysteine desulfuration protein
Ec32 orthologEc-06_000700.1
Descriptionprotein maturation by iron-sulfur cluster transfer
Cds size972
COG categoryT
BRITEko00000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.50.1prot_P-littoralis_Contig148.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 230296..234837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789698.3732324-UTR-P-littoralis_Contig148:230235..2302951680789698.3732324-UTR-P-littoralis_Contig148:230235..230295Pylaiella littoralis U1_48UTRP-littoralis_Contig148 230236..230295 +
1680789698.4312527-UTR-P-littoralis_Contig148:234837..2362721680789698.4312527-UTR-P-littoralis_Contig148:234837..236272Pylaiella littoralis U1_48UTRP-littoralis_Contig148 234838..236272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789698.3884726-CDS-P-littoralis_Contig148:230295..2306901680789698.3884726-CDS-P-littoralis_Contig148:230295..230690Pylaiella littoralis U1_48CDSP-littoralis_Contig148 230296..230690 +
1680789698.3980806-CDS-P-littoralis_Contig148:233075..2332731680789698.3980806-CDS-P-littoralis_Contig148:233075..233273Pylaiella littoralis U1_48CDSP-littoralis_Contig148 233076..233273 +
1680789698.4101217-CDS-P-littoralis_Contig148:233681..2338491680789698.4101217-CDS-P-littoralis_Contig148:233681..233849Pylaiella littoralis U1_48CDSP-littoralis_Contig148 233682..233849 +
1680789698.4199545-CDS-P-littoralis_Contig148:234626..2348371680789698.4199545-CDS-P-littoralis_Contig148:234626..234837Pylaiella littoralis U1_48CDSP-littoralis_Contig148 234627..234837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.50.1

>prot_P-littoralis_Contig148.50.1 ID=prot_P-littoralis_Contig148.50.1|Name=mRNA_P-littoralis_Contig148.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=324bp
MMIARAALLLAALATSVCSVGQAFVTSNVAVGSAAGGSFSDRAAAVAAPT
ATPGSRPSSRAAESARPRRTSLLMSTSTDLKELGLTPELERMTKMFRKCP
TDKMRQMQLLHLAQMGDKMDPDLQTEKNKVLGCLSTVYVAAELKDGLIYY
YTDSNAMITKGLASLLAMGLSGNPPEAIQRVKPEFIQVAGLQASLTAGRN
NGFINMLKTMKGKALALGGESALRAALEDATPAEEPVKEEPKESGAITAR
IVEKLQALEPLQLEIVDDSGGEESKLTISIVSKSFEGMMSLKRHRSVYGL
MADEMKIVHAVTLVTKTPEEAGM*
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mRNA from alignment at P-littoralis_Contig148:230236..236272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.50.1 ID=mRNA_P-littoralis_Contig148.50.1|Name=mRNA_P-littoralis_Contig148.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6037bp|location=Sequence derived from alignment at P-littoralis_Contig148:230236..236272+ (Pylaiella littoralis U1_48)
CACGTACTACCCCACGACCTAGCCAAACGTACCGCGAGACCACGACGCCG AAGCTCATCAATGATGATTGCACGAGCGGCACTTTTATTAGCAGCGCTAG CGACCAGCGTGTGCTCGGTCGGGCAAGCGTTCGTTACGTCAAATGTTGCA GTAGGGTCGGCAGCAGGCGGCTCGTTTTCAGACCGTGCGGCAGCAGTAGC AGCACCAACAGCAACCCCAGGCTCGAGACCGTCATCTCGTGCTGCCGAAT CAGCACGCCCACGACGTACGTCCCTTCTCATGTCGACGTCGACTGATCTG AAGGAGTTGGGTTTGACTCCCGAGTTGGAGCGAATGACGAAGATGTTCAG AAAGTGTCCCACCGACAAAATGCGACAAATGCAGCTTCTCCACCTGGCGC AGATGGGAGACAAAATGGACCCAGACCTCCAGACCGAGAAGAACAAGGTG TTGGGGTAAGTCGTCGCGACCCCCGTGAGAGTAAGGGATTTAGTTAGAAA AGTTTATCGCTCGCGCAGAGATTCTTCCTCAAGCGGATCTCGAACGTGTG CTACAGCAGCTAGTTGTAGGGCATCTACCCGTCTGAATAATTCACCCCGT TCATGCCCTCAAACATCATGTGTCGTTGCTGGAGTCCGGGCCTGCTGTTT GAACGACAACGATTCACGCCTGTGACACCGGGCGGGAAAGGTGCCGCTGT AGTTGGGATTGGCGCTGCCTCTGGTTGGTCGAGCCACAGATCGCGTCCGC GGTGCTAGGTTCTAGGTTCGTAATGACGGGGCTTGCTGTTACTGTACTGC ACCCGCAAGAGAAAACTCGTCCCGAATTTCGAATTTCACGTTGCACCAGT TGGAAGGGAGTTGGTGCAGAAGCTGAAGGCTGTGCTTGGCAACATCCAAA TGTCCCGTGTGTCCAAAAATGTCCAATTGTCGAGTGTCGGTTACAGCAGT TATGATAGTCTATGCTGCTCTTCAAAAAAAGCCGACAACACGAACGAACG CAACTAGCCACTGCTGCTCTATCATAGGGCACACCAGGGGCACACCCACA CACACTGAAACCTGTATACACGCGTGTTGATCGCTGACATGAACGACACC CAGCTGGCAGGGTACTTTACTGCTGTAGTGCCCCGCCTGTGCATCAGTCC ACCGGCTCCTGGCAGCGCCGATGGTGGCTGCCTCTGCACACATAATGGCG CTGACCTTTTTCCGTTGCAATATCGTCTCAAGCTGTCTAATCAAACTTCA GAATGCCCGGTATGGGGTAGGTAGCCGGGAGGCACACCTCAACATAATTC CTCTGACTTCACGGAACTTCGACTCGAGCTATCACATGCCCGTGGTCCTC TGTAGTCGGCTGTGGGCAACTTTGATACCGAGCGATAGCAACTAAACCAG CCCTCCTTTCTCGTACCCCGCCGATGAGTATGCCCGATATCTTGGCCATG GATGGCTGCTTTTTGTCGAAGCTGAGCAACCCAGGGGTGTTCTGGAAGCA TCAACAGAGTTTAGTTTCCCTCCCGCTCGTGTGTTCACACGACCCCCGAG CTGACTTTCCGTCGGTGGCGTATCCCCCGGCACACATTCCATCACACCAG AAAGGTCTTGGCGTTTTGGAGTTCGAAGGGACAGCGGGAGAATGTTTCCC AAAGAAATGGCTGACGCCAATCGTTGCTAGAGCGTCTGGTTGATAAACAT ACGAGGTTTCCATTTGGGGACCGGAAAAGCAAAAACACGCGAAATATCCA AGTAGCTGAGAATGCATCTCCTTTCAACACAGCAAAGATGTTGCACCGAT TCTACCCCGACTGCTTGTGCTTGCGCCCCAGACACTGTTGCCGAATGGTA CGGGGTGCATTGCTCGTTCTGACTGTGACATTCCAAGCTCTCTCGGCTGC GTTGAGGCTCCACTGACATGGGCGGTGACAAAACCCCCAGAGAAAACCCT GATTTTTTATCTGAAATATCGTTTGAGTCTTTGACAAAAGAGCTTATTTT GACGAGGCTCAAACAAGTGCTGCTGCCCGTGCGTGCGCGATCGTATCAGG AGAGAACGTCATGTAGAAACGTGTGCGTCGGCGCGTTCATATCTGGTGCT GGGGCTTACATATCGAAGGTCGCAGCAGTGGCTCAAAACTCAGCAGGATC TCATGAAAAACTCCGCAATCCGGGCGGACACCAAACGTTTGACGCGGTTG TACTCGCCGCAATTGGCACTAATCTTCTGAACTACGGTTCGTCCGAGGTA GCAAGTGGCATAGGCTACTGCTGTTGACCCGTAGTTCAAGAGGTTTGGGT AGGTGGCGGCGAGTACAGCAGTAGAAGATAGCAAAGCAGTGGACGATATT TTTTGGAATTCGTCCAGTTCGCGGACTTTCTGAACCACTGCTGCGGCCTT CGATATGTGAGTCCCAGCAGCAGATCTGAATGCGCCGACGCACACGTAGC TACTATATGACGTTCTTGTCTGGTCGGAACTAGGCGATCGTGCACGGACA GCAGCCCTTATTTGATTGAGGAAAATGATCAAAATAAGAAATTAAGCTAT TTTGACTTGATTTTAGGCTGGTTGAAATATTTATCTCAAAGTTTGTCCAG GAGATTGGAGGTACAATCGTGATATGCATGTAAAAAGAAGCTCCTGCCGC CGCTGTCTGTGATGAGTAACAGTTTCTCTTCAACCGACGCCTTCTTACTG GTGTGGGGTACCCAGTGTGTGATGGATAGTCAGAGCCCCTTCGCTGTTTT TCAAAATCTGTGCCTCTCAACAACCTGTCGTCCCTGGATCATTAAGCAAC GCATTACTCGCGCCGGCGTTCTTCTTGTTTGGAAATTCAGGTGCCTCTCC ACCGTGTACGTGGCAGCAGAGCTGAAGGACGGGTTGATCTACTATTACAC GGATTCGAACGCGATGATCACCAAGGGCTTGGCCAGCCTTCTCGCGATGG GTCTGTCGGGCAACCCGCCAGAAGCCATCCAGCGAGTGAAGCCGGAGTTT ATCCAAGTGGCCGGTCTCCAGGCCAGCCTTACTGCCGGGTACGTTCGTAT GCCTCAGGCCCGTTCGCGACGGGCCCCCCCTGCTGTTCTGGTCGTGTGCT CGTGCGTAGAGCTGCAGACCAGGTGGACCAGGCGGTCGACTGGCTAGAAA GAGATGTTTCATGCACTCAAAACCACGGCAAAAAGCGGTTGCGAAGATGT ACGCCCCCTCGATGAACAGTGTATTCTGTGCGGGGGGACAGTCGCCAGCA ATTTAACTCCAAGGGTAACAAACGTGGGGGCAAAAATACATATGCCTTCT TCGCTTCTCTCGTCTCCTGTAACATGCTGCGTGTCAGCGATATGTCGCCG TTTTTATGGCGTTGATCCGACATGCACAGCTCCGACTTGTTGACGCGCTA CACGTTCTGCACCGGCTCTTGTTTTTTGTCCACATCATATATTCAGGCGA AACAACGGATTTATCAACATGCTTAAAACGATGAAGGGGAAGGCGCTTGC TCTAGGCGGCGAGTCCGCCTTGCGGGCAGCATTGGAGGACGCAACGCCGG CTGAAGAGCCGGTGAAGGAGGAGCCGAAGGAGAGCGGGGCAATTACGGCA CGGATTGTCGAAAAGTAAGTACCCGCCGTGTACAGCTGATGTGCCATGAA ATGCTGTAACAGCATTGGTTGAGTACTGGTAGCCCTCCAGACAAATCCAG AGTTGCGATATCTCGGGCCGCGGGTGATTTGCTCTGTTTCAGCGTTGACG ATAGACGAGGCACCCTCGATTTGCTCCATGTATGTCTAAAATTTGACCAC TACCCTTTCAAGTATTGGTTACCCATGCCATGCCTTTCCTTTGATTGGCC CACTGAAAAACATTTTGTTGAATTACAGCTGCTGGTGTTGCCGATAGTTG AAAAACAGGCTATTGTTATTTTTTTTCCATGTCGTAACTTGTGAAATCTG GCTTGCGCGTGAAATAAGCAGAAACTGAAAGAACGAAAGGCCGACACAAT GACGAGGAATGATTGAACGATAGTTATGCGCTGTTCAGTCCGCAGGGGTG GTACTTGGACGCCTCATCGTTCGAGCATTTCAAAACCAATCCAACGGTAC CCCGCTACTAGCCAAGTAGGAACAAGAGGTCCGGTACGATGCTCACAGTC AGCCGTGGCGGAGTCGAGGGCGCGACGGATGGCAGTCATTCTCTAAGAGA ACACGATACCTTAGACCCAACCCTCCATGTTCATCTCCCCGTTAGTCTAG TCACGCACCCGACGATCCATAGTCATTTCGTGCGTCTTATTCCGTGCTAG AGGCGATTCCCCCCACGAGCAGAAGGGCTCTTCACTGAGTCATCTCACTA ATATACTCGTGCGTGCATTATCCGCCTCCCGATGTTTGCAGGCTGCAAGC ATTGGAGCCACTGCAGCTGGAAATCGTGGACGACTCGGGAGGGGAAGAGT CGAAGTTGACGATCAGCATCGTCAGCAAGTCATTTGAGGGGATGATGTCG CTGAAGCGCCACCGGTCTGTGTACGGCCTCATGGCAGACGAGATGAAAAT CGTGCACGCCGTTACCCTCGTTACCAAAACCCCGGAAGAGGCTGGCATGT AGAAAACACACCGTCGAAAAAATCAGCAATATTGTGCTGGTTTTGACTGG ATCCGGCAGCACAACTTAAGTGCAAACACGTCAGCAAGTTTCGATTTTAT GCTCGTGTTGCACGCTTGTCTAGTTTTTTACACCAGAAATCTCGTCGCAC GCGTGTGGGGACTGCGACAGCAGTTGTCTACTACCATATATGTGAAGGTG GTCTAAATTTCAGAGCTTGCGGCTTAGTAGATCGACCCGAGGGTCGTGGG AGATGACTAATCGTATAAACTTGGTGCCGCCGGCGGCTTGGTTTTTTTAT CACGCCGAATTGCTCATCTAGTCTCCTTGGCATTTTTGCTTGCGTCACCG GACTGGACGGTGATTTCGGGCTTTGGCTCGCGTCGTGTTGTTGTCTCGTG GTGTTTTGAGTGGCTTGATAGCGACCGATGTCTCCTTGTATGACAGTCGG GATCGTGGTGTAGTTGGTTGAGTTTCTGTTCCATTACTAGTTGGAATTTG AAAACCCGATCTCCCAAATTTTGAAGACGCGGCGGAACGTGGCAAACCAG AACGCGCACATAGCTTTCGGTATTTTATTTCCGTTAGGTATTTCGTTCTT GTATGTTGCCTTTTGAGAGTCGTTCCAACTCGAGTTGCAAGGCTTGTGCA GGTTTTCTTCGGCTGCGCGAGCAACCTCAACCGGTCGATATAGAAATGAT CACCATACATCCCAACTTACTCTGGGTTGATGATGAATGCACACTTCGTA TATGTATATGTGTGCAGCATTGTCGGTTCTCCGCGTTGCACTGCTGTGTC CGTTCAAAGTGAAAACTGTTGGCGTAAGTCTCACTGGAACCCATGTTGCC GCGGCAGAACGCAGGGGCGTAGTAAACACAGCATGGTCTGCAGACGTGGA TTGAGTTGGAAGGAACGCTACGAGTAGTCACGACGAATGAGGCAGTGTCC AATCTGCGTTGGGGGACGCTCAGTGTCAACATGTGCCCGCCCGCCACGTG GGACGTTAGAAATTGAAAACCAAGAGAGTTTTGTGATGGTCGTGAACTCA CAGTTTTTTTTACAACCCCATGATGCAACCCACAACACAAAGTTCCTGTC TGTGCCGCATCATCAAAGTTGACGGAAACAAAACTGGAGTATCAGTGGAC ACATCACCAATGCCCCATGACAACACTTCCACCAGAGTGGTTTTCGAGGA AACGTCGTGAGACTGTATTAGTGTCGCGTGTAGGCAGCAGGCGATGTGTA TACAAGGATCAAACCCCTCAAAGTAATTACCCAACGCACAGAGTCTGTCC GTCGTATCCAAATTATGCACCCTCCGTGAACGGGACGCGGTTGACTTGTG TTTTTTCCGTCTCGTCGAATTTTCTGTCTTGAAAAATGTACTCAACTCAA TTGTGCCCCAAGAGATTTTACGTAAAACGAAATCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:230236..236272+

>mRNA_P-littoralis_Contig148.50.1 ID=mRNA_P-littoralis_Contig148.50.1|Name=mRNA_P-littoralis_Contig148.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig148:230236..236272+ (Pylaiella littoralis U1_48)
ATGATGATTGCACGAGCGGCACTTTTATTAGCAGCGCTAGCGACCAGCGT
GTGCTCGGTCGGGCAAGCGTTCGTTACGTCAAATGTTGCAGTAGGGTCGG
CAGCAGGCGGCTCGTTTTCAGACCGTGCGGCAGCAGTAGCAGCACCAACA
GCAACCCCAGGCTCGAGACCGTCATCTCGTGCTGCCGAATCAGCACGCCC
ACGACGTACGTCCCTTCTCATGTCGACGTCGACTGATCTGAAGGAGTTGG
GTTTGACTCCCGAGTTGGAGCGAATGACGAAGATGTTCAGAAAGTGTCCC
ACCGACAAAATGCGACAAATGCAGCTTCTCCACCTGGCGCAGATGGGAGA
CAAAATGGACCCAGACCTCCAGACCGAGAAGAACAAGGTGTTGGGGTGCC
TCTCCACCGTGTACGTGGCAGCAGAGCTGAAGGACGGGTTGATCTACTAT
TACACGGATTCGAACGCGATGATCACCAAGGGCTTGGCCAGCCTTCTCGC
GATGGGTCTGTCGGGCAACCCGCCAGAAGCCATCCAGCGAGTGAAGCCGG
AGTTTATCCAAGTGGCCGGTCTCCAGGCCAGCCTTACTGCCGGGCGAAAC
AACGGATTTATCAACATGCTTAAAACGATGAAGGGGAAGGCGCTTGCTCT
AGGCGGCGAGTCCGCCTTGCGGGCAGCATTGGAGGACGCAACGCCGGCTG
AAGAGCCGGTGAAGGAGGAGCCGAAGGAGAGCGGGGCAATTACGGCACGG
ATTGTCGAAAAGCTGCAAGCATTGGAGCCACTGCAGCTGGAAATCGTGGA
CGACTCGGGAGGGGAAGAGTCGAAGTTGACGATCAGCATCGTCAGCAAGT
CATTTGAGGGGATGATGTCGCTGAAGCGCCACCGGTCTGTGTACGGCCTC
ATGGCAGACGAGATGAAAATCGTGCACGCCGTTACCCTCGTTACCAAAAC
CCCGGAAGAGGCTGGCATGTAG
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