mRNA_P-littoralis_Contig1476.7.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 146 bits (368), Expect = 5.890e-38 Identity = 73/138 (52.90%), Postives = 86/138 (62.32%), Query Frame = 3
Query: 3 QRMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALAMWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
QRM++ V R LA A+ K FDV +CDGA EHRS Q A F + +G E SFA F V F HPVH +FNMSDP HILKKI NA WHSD+ KQR L MWC + K +FSLKT +R Y VE D DS++
Sbjct: 716 QRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMT 853
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.320e-36 Identity = 72/138 (52.17%), Postives = 84/138 (60.87%), Query Frame = 3
Query: 3 QRMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALAMWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
QRM++ R LA A+ K FDV CDGA EHRS Q A F + +G E SFA F V F HPVH +FNMSDP HILKKI NA WHSD+ KQR L MWC + K +FSLKT +R Y VE D DS++
Sbjct: 625 QRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMT 762
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.540e-33 Identity = 60/85 (70.59%), Postives = 66/85 (77.65%), Query Frame = 3
Query: 162 EKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALAMWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
+++ FPVAF HPVH GPIFNMSDPPHILKKIAN CWHSD K+R LAMWC DE GN LVRFSL T ER Y VENDG++LS
Sbjct: 362 QRNSVSFPVAFPHPVHLGPIFNMSDPPHILKKIANTCWHSDQDSKKRELAMWCGDEEGNTDLVRFSLATAERVYNQVENDGNTLS 446
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI) HSP 1 Score: 122 bits (306), Expect = 1.700e-31 Identity = 63/136 (46.32%), Postives = 84/136 (61.76%), Query Frame = 3
Query: 6 RMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDA--EKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALA-MWCTDEHGNEKLVRFSLKTGERAYRLVENDG 404
RM+ + +L A+ K FDV VCDGA EHRS Q F +++GD+ EK +F VAF+HP HGGP+FNMSDP H+LKK+ NA WHSD+ KQR L +W + + + V FSLKT E+ ++ E G
Sbjct: 88 RMLDDIMTSLYQAHSDKNFDVIGTVCDGAAEHRSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIPSKQRDLKKLWYNEAAEDYEWVSFSLKTLEKVWKEEEAGG 223
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE) HSP 1 Score: 112 bits (281), Expect = 3.070e-26 Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 3
Query: 6 RMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDA--EKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALA-MWCTDEHGNEKLVRFSLKTGERAYRLVE 395
RM+ + L A++ K FDV VCDGA EHRS Q T F +++ D+ E+ ++PVAF+HP H GP+FNMSDP H+LKK+ NA W+S L K+R L +W +L FSLKT E+A+R E
Sbjct: 474 RMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRSFQQHFATTTFSEWAKSDSVFEQRHKDYPVAFKHPHHDGPVFNMSDPVHLLKKVVNALWYSGLDSKERHLQNLWWNPLTDAPELASFSLKTLEKAWREEE 606
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.690e-24 Identity = 52/107 (48.60%), Postives = 63/107 (58.88%), Query Frame = 3
Query: 96 EHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALAMWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
+ RS Q A F + +G E SF F V HPVH +FNMSDP HILKKI NA WHSD+ KQR L MWC + K +FSLKT +R Y VE D +S++
Sbjct: 554 DSRSFQTHAAISGFCRWIKGPQEGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNNSIT 660
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE) HSP 1 Score: 103 bits (258), Expect = 3.690e-23 Identity = 64/141 (45.39%), Postives = 79/141 (56.03%), Query Frame = 3
Query: 6 RMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDA--EKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALA--MWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
RM+ + L A+ K DV VCDGA EHRS Q + T FG ++ + E+ FA+FP+AF HP HG P+FNMS PPH+L + NA W+S L KQR L W D E V FSLKT E + E G SLS
Sbjct: 259 RMLDEIMLRLYEAHPDKKIDVIGTVCDGAGEHRSFQTKLATSTFGEWADPKSRLEERFADFPMAFNHPHHGEPVFNMSGPPHLLX-VVNALWYSSLPSKQRHLKNLFWNRDTEEFE-WVSFSLKTLETVWVNEERGGGSLS 397
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE) HSP 1 Score: 100 bits (248), Expect = 8.500e-22 Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 3
Query: 90 AQEHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQR 302
A+ RS QLRA T +F AF+QGD E+SF+ FPVA RH VH GP+FN+SDPPH++KKIAN WHSDL G R
Sbjct: 313 AKPVRSFQLRAATVEFSAFAQGDDEESFSNFPVALRHSVHLGPMFNVSDPPHLVKKIANTLWHSDLTGAIR 383
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5KYD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD6_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18 Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 3
Query: 177 EFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRAL-AMWCTDEHGNEKLVRFSLKTGERAYRLVENDG 404
+F VAFRHP HG P+FNMS+P H+LKK+ NA WHS LA KQR L +W + E+ V FSLKT E + E G
Sbjct: 5 DFKVAFRHPQHGRPVFNMSEPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEEEEWVSFSLKTLEEVWNQEEAGG 81
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6J8CJA5_MYTCO (THAP9 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CJA5_MYTCO) HSP 1 Score: 51.6 bits (122), Expect = 7.430e-5 Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 3
Query: 57 GFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFR---HPVHGGPIFNMSDPPHILKKIAN 266
GF + +CDGA E+R+ F + AE SF +P A +PV+GGPIF MSDPPH++KK+ N
Sbjct: 690 GFTILLSICDGASENRN------------FIKSCAE-SFPGYPQAQHLCINPVNGGPIFFMSDPPHLIKKLRN 749 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1476.7.4 >prot_P-littoralis_Contig1476.7.4 ID=prot_P-littoralis_Contig1476.7.4|Name=mRNA_P-littoralis_Contig1476.7.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp MVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDback to top mRNA from alignment at P-littoralis_Contig1476:9360..10066+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1476.7.4 ID=mRNA_P-littoralis_Contig1476.7.4|Name=mRNA_P-littoralis_Contig1476.7.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=707bp|location=Sequence derived from alignment at P-littoralis_Contig1476:9360..10066+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1476:9360..10066+ >mRNA_P-littoralis_Contig1476.7.4 ID=mRNA_P-littoralis_Contig1476.7.4|Name=mRNA_P-littoralis_Contig1476.7.4|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig1476:9360..10066+ (Pylaiella littoralis U1_48)back to top |