mRNA_P-littoralis_Contig1476.7.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1476.7.4
Unique NamemRNA_P-littoralis_Contig1476.7.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 5.890e-38
Identity = 73/138 (52.90%), Postives = 86/138 (62.32%), Query Frame = 3
Query:    3 QRMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALAMWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
            QRM++ V R LA A+  K FDV   +CDGA EHRS Q  A    F  + +G  E SFA F V F HPVH   +FNMSDP HILKKI NA WHSD+  KQR L MWC  +    K  +FSLKT +R Y  VE D DS++
Sbjct:  716 QRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMT 853          
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.320e-36
Identity = 72/138 (52.17%), Postives = 84/138 (60.87%), Query Frame = 3
Query:    3 QRMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALAMWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
            QRM++   R LA A+  K FDV    CDGA EHRS Q  A    F  + +G  E SFA F V F HPVH   +FNMSDP HILKKI NA WHSD+  KQR L MWC  +    K  +FSLKT +R Y  VE D DS++
Sbjct:  625 QRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMT 762          
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.540e-33
Identity = 60/85 (70.59%), Postives = 66/85 (77.65%), Query Frame = 3
Query:  162 EKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALAMWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
            +++   FPVAF HPVH GPIFNMSDPPHILKKIAN CWHSD   K+R LAMWC DE GN  LVRFSL T ER Y  VENDG++LS
Sbjct:  362 QRNSVSFPVAFPHPVHLGPIFNMSDPPHILKKIANTCWHSDQDSKKRELAMWCGDEEGNTDLVRFSLATAERVYNQVENDGNTLS 446          
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.700e-31
Identity = 63/136 (46.32%), Postives = 84/136 (61.76%), Query Frame = 3
Query:    6 RMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDA--EKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALA-MWCTDEHGNEKLVRFSLKTGERAYRLVENDG 404
            RM+  +  +L  A+  K FDV   VCDGA EHRS Q       F  +++GD+  EK   +F VAF+HP HGGP+FNMSDP H+LKK+ NA WHSD+  KQR L  +W  +   + + V FSLKT E+ ++  E  G
Sbjct:   88 RMLDDIMTSLYQAHSDKNFDVIGTVCDGAAEHRSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIPSKQRDLKKLWYNEAAEDYEWVSFSLKTLEKVWKEEEAGG 223          
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.070e-26
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 3
Query:    6 RMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDA--EKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALA-MWCTDEHGNEKLVRFSLKTGERAYRLVE 395
            RM+  +   L  A++ K FDV   VCDGA EHRS Q    T  F  +++ D+  E+   ++PVAF+HP H GP+FNMSDP H+LKK+ NA W+S L  K+R L  +W        +L  FSLKT E+A+R  E
Sbjct:  474 RMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRSFQQHFATTTFSEWAKSDSVFEQRHKDYPVAFKHPHHDGPVFNMSDPVHLLKKVVNALWYSGLDSKERHLQNLWWNPLTDAPELASFSLKTLEKAWREEE 606          
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.690e-24
Identity = 52/107 (48.60%), Postives = 63/107 (58.88%), Query Frame = 3
Query:   96 EHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALAMWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
            + RS Q  A    F  + +G  E SF  F V   HPVH   +FNMSDP HILKKI NA WHSD+  KQR L MWC  +    K  +FSLKT +R Y  VE D +S++
Sbjct:  554 DSRSFQTHAAISGFCRWIKGPQEGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNNSIT 660          
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.690e-23
Identity = 64/141 (45.39%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    6 RMVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDA--EKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRALA--MWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLS 416
            RM+  +   L  A+  K  DV   VCDGA EHRS Q +  T  FG ++   +  E+ FA+FP+AF HP HG P+FNMS PPH+L  + NA W+S L  KQR L    W  D    E  V FSLKT E  +   E  G SLS
Sbjct:  259 RMLDEIMLRLYEAHPDKKIDVIGTVCDGAGEHRSFQTKLATSTFGEWADPKSRLEERFADFPMAFNHPHHGEPVFNMSGPPHLLX-VVNALWYSSLPSKQRHLKNLFWNRDTEEFE-WVSFSLKTLETVWVNEERGGGSLS 397          
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.500e-22
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 3
Query:   90 AQEHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQR 302
            A+  RS QLRA T +F AF+QGD E+SF+ FPVA RH VH GP+FN+SDPPH++KKIAN  WHSDL G  R
Sbjct:  313 AKPVRSFQLRAATVEFSAFAQGDDEESFSNFPVALRHSVHLGPMFNVSDPPHLVKKIANTLWHSDLTGAIR 383          
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6H5KYD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18
Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  177 EFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRAL-AMWCTDEHGNEKLVRFSLKTGERAYRLVENDG 404
            +F VAFRHP HG P+FNMS+P H+LKK+ NA WHS LA KQR L  +W   +   E+ V FSLKT E  +   E  G
Sbjct:    5 DFKVAFRHPQHGRPVFNMSEPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEEEEWVSFSLKTLEEVWNQEEAGG 81          
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Match: A0A6J8CJA5_MYTCO (THAP9 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CJA5_MYTCO)

HSP 1 Score: 51.6 bits (122), Expect = 7.430e-5
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 3
Query:   57 GFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFR---HPVHGGPIFNMSDPPHILKKIAN 266
            GF +   +CDGA E+R+            F +  AE SF  +P A     +PV+GGPIF MSDPPH++KK+ N
Sbjct:  690 GFTILLSICDGASENRN------------FIKSCAE-SFPGYPQAQHLCINPVNGGPIFFMSDPPHLIKKLRN 749          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1476.7.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE5.890e-3852.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.320e-3652.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR14_9PHAE1.540e-3370.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK65_ECTSI1.700e-3146.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP1_9PHAE3.070e-2645.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE1.690e-2448.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE3.690e-2345.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE8.500e-2264.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYD6_9PHAE1.350e-1853.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6J8CJA5_MYTCO7.430e-542.47THAP9 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1476contigP-littoralis_Contig1476:9360..10066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.8400445-UTR-P-littoralis_Contig1476:9359..93671680789695.8400445-UTR-P-littoralis_Contig1476:9359..9367Pylaiella littoralis U1_48UTRP-littoralis_Contig1476 9360..9367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.849246-CDS-P-littoralis_Contig1476:9367..94591680789695.849246-CDS-P-littoralis_Contig1476:9367..9459Pylaiella littoralis U1_48CDSP-littoralis_Contig1476 9368..9459 +
1680789695.8654616-CDS-P-littoralis_Contig1476:9747..100661680789695.8654616-CDS-P-littoralis_Contig1476:9747..10066Pylaiella littoralis U1_48CDSP-littoralis_Contig1476 9748..10066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1476.7.4prot_P-littoralis_Contig1476.7.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1476 9368..10066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1476.7.4

>prot_P-littoralis_Contig1476.7.4 ID=prot_P-littoralis_Contig1476.7.4|Name=mRNA_P-littoralis_Contig1476.7.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MVMTVARALATANQFKGFDVGCLVCDGAQEHRSHQLRAGTFKFGAFSQGD
AEKSFAEFPVAFRHPVHGGPIFNMSDPPHILKKIANACWHSDLAGKQRAL
AMWCTDEHGNEKLVRFSLKTGERAYRLVENDGDSLST
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mRNA from alignment at P-littoralis_Contig1476:9360..10066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1476.7.4 ID=mRNA_P-littoralis_Contig1476.7.4|Name=mRNA_P-littoralis_Contig1476.7.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=707bp|location=Sequence derived from alignment at P-littoralis_Contig1476:9360..10066+ (Pylaiella littoralis U1_48)
TACAGCGAATGGTGATGACAGTTGCGCGCGCGCTGGCAACTGCGAACCAA TTCAAGGGGTTCGACGTCGGGTGCTTGGTGTGCGATGGGGCGCAAGAACA GTGAGTCCACACAATGTTGGGTCAGCAGTTTGTGCTTCCTAGCACGTATC TGGCTGGGGTTGTTGTTTTGAGCGACCCCACCCGCATGCTGCACGCCTCA GGATGGGCAACGGTCGCAGGTGTATTCTGCACAAAATCGGCTGAACGGTG TGTGCGCGGGAGTTCCACCCCTCGCCCTCGGACCCCATCACCCTCCCTTC CCACTTACACGTCCCCCTCTCCCTCCTTCCCTGTGCGCATTTACCACTTC TCGGCCGCTCTCCGTAATATATGCGCTACATATCATAGCCGCTCCCATCA GCTGCGAGCCGGCACGTTCAAGTTCGGCGCATTCTCACAAGGCGATGCCG AGAAATCCTTCGCGGAGTTCCCGGTCGCCTTCCGTCATCCTGTCCACGGA GGCCCGATTTTCAACATGAGCGACCCTCCGCATATCCTGAAGAAGATCGC AAACGCCTGCTGGCACAGTGACCTCGCCGGTAAGCAGCGTGCCCTCGCGA TGTGGTGCACCGACGAACACGGCAACGAGAAGTTGGTTCGTTTCTCGCTG AAGACCGGCGAGAGAGCGTACCGGCTTGTCGAGAACGACGGCGACAGCCT TTCCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1476:9360..10066+

>mRNA_P-littoralis_Contig1476.7.4 ID=mRNA_P-littoralis_Contig1476.7.4|Name=mRNA_P-littoralis_Contig1476.7.4|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig1476:9360..10066+ (Pylaiella littoralis U1_48)
ATGGTGATGACAGTTGCGCGCGCGCTGGCAACTGCGAACCAATTCAAGGG
GTTCGACGTCGGGTGCTTGGTGTGCGATGGGGCGCAAGAACACCGCTCCC
ATCAGCTGCGAGCCGGCACGTTCAAGTTCGGCGCATTCTCACAAGGCGAT
GCCGAGAAATCCTTCGCGGAGTTCCCGGTCGCCTTCCGTCATCCTGTCCA
CGGAGGCCCGATTTTCAACATGAGCGACCCTCCGCATATCCTGAAGAAGA
TCGCAAACGCCTGCTGGCACAGTGACCTCGCCGGTAAGCAGCGTGCCCTC
GCGATGTGGTGCACCGACGAACACGGCAACGAGAAGTTGGTTCGTTTCTC
GCTGAAGACCGGCGAGAGAGCGTACCGGCTTGTCGAGAACGACGGCGACA
GCCTTTCCACC
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