mRNA_P-littoralis_Contig147.75.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig147.75.1
Unique NamemRNA_P-littoralis_Contig147.75.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5JVT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.720e-48
Identity = 81/128 (63.28%), Postives = 100/128 (78.12%), Query Frame = 3
Query:   18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGS---LRFPAGWQTRLYYTTLG----GQKKK 380
            MALNLEVSN+APALP++LT+DLMD+F IF   YGG   GQ S KALQC P+AWACLA+KE+ K SK+ RDR+ SRCYQE+ALPGWIK+C+ AI +S  S   LRFPAG +++LY+ TLG    G +KK
Sbjct:    1 MALNLEVSNRAPALPVELTNDLMDSFGIFCATYGGTPRGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYQEIALPGWIKLCHRAITESAESDNPLRFPAGLESKLYFPTLGVAIMGNRKK 128          
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5KHV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.170e-42
Identity = 73/136 (53.68%), Postives = 90/136 (66.18%), Query Frame = 3
Query:   18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQ-EVALPGWIKVCNLAIE-------------------------QSGGSLRFPAGWQTRL 347
            MAL+LEV+N+APALP++LT+DLMD+F IF   YGG  LGQ S KALQC P+AWACLA+KE+ K SK+ RDR+ SRCY  E+ LPGWIK+CN AI                          +S   LRFPAGW+T+L
Sbjct:    1 MALDLEVTNRAPALPVELTNDLMDSFGIFCATYGGTPLGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYHDEIELPGWIKLCNRAIASPRXMEXXXXXXXXXXXXXXXXESAESDNPLRFPAGWETKL 136          
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5KB22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB22_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.030e-36
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 3
Query:   18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAI 296
            M L+LEV+N+A ALP++LT+DLMD+F IF   YGG  LGQ S KALQC P+AWACLA+KE+ K SK+ RDR+ SRCYQE+ALPG I +C+ AI
Sbjct:    1 MVLDLEVTNRASALPVELTNDLMDSFGIFCATYGGTPLGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYQEIALPGRITLCHRAI 93          
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 7.090e-35
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 3
Query:   18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGSLRFPAGWQTRLYYTTLG-GQKKKGVPSLSPKTFMQKPAAALARFK 446
            MA+N ++S KAP L IDLT+D+M  F  +   +GG  + QA +KALQC+P+A A LA+K+   M  D R+   S+  QE+A+PGWIKVC  AI+ S G L FP GW+  LYYTTLG G+  +       +TFM+ P A   +FK
Sbjct:    1 MAINFDISMKAPPLNIDLTEDMMWGFHRYCDKFGGRKMNQAGLKALQCVPIAHAALAVKQGEDMKSDVRNAAMSKRMQEIAVPGWIKVCEAAIKDSQGELVFPHGWKDALYYTTLGTGENPR-------QTFMKNPKALFTKFK 137          
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5KFH5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH5_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.770e-27
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 3
Query:   18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGSLRFPAGWQTRLYYTTLG 365
            MA++   S KAP LPI+L++D M A   F G YG  ++ Q ++K LQ IPL  + LA+KE+ KMS   R+  AS+C QE+A+PG+IK+   A+   GG L+ P  W+  +YYT+LG
Sbjct:    1 MAVDFPKSQKAPMLPINLSEDFMFALRKFCGTYGNKTMTQPALKMLQSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSIMGGPLQMPHKWKVMVYYTSLG 116          
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5JXM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.700e-26
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 3
Query:   18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGSLRFPAGWQTRLYYTTLGGQKKKGVPSLSPKTFMQKPAAALARFKT 449
            MA++   S KAP LPI+  +D M A   F G YG  ++ Q ++K L  IPL  + LA+KE+ KMS   R+  AS+C QE+A+PG+IK+   A+    G  + P  W+  +YYTTLG    K       KTFM+KP+  L +FK+
Sbjct:  105 MAVDFPKSQKAPMLPINRPEDFMFALRKFCGTYGNKTMTQPALKMLPSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSTMEGPPQMPHKWKVMVYYTTLGSGTSKA------KTFMEKPSTVLTKFKS 242          
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5JUT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.850e-18
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 3
Query:   18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGSLRFP 326
            MA++   S KAP LPIDL++D M A   F G YG  ++ Q ++K LQ IP   + LA+KE+ KMS   R+  AS+C QE+A+PG+ K+   A+    G L+ P
Sbjct:    1 MAVDFAKSQKAPMLPIDLSEDFMFALRKFCGTYGNKTMTQPALKMLQPIPRVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGF-KLIEHALSTMDGPLQMP 102          
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: D7FUP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.680e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 3
Query:   54 ALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACL-AIKESSKMSKDAR 224
            ALP++ T+DLMDA E+ S  +GG ++G+ASMKALQC PLAWACL A  E+ +  K+ R
Sbjct:  133 ALPVERTNDLMDAIEVISDTFGGAAIGEASMKALQCFPLAWACLTANNEAEQKQKNGR 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JVT0_9PHAE1.720e-4863.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHV4_9PHAE2.170e-4253.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB22_9PHAE1.030e-3664.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV02_ECTSI7.090e-3547.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFH5_9PHAE1.770e-2745.69Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXM3_9PHAE1.700e-2641.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT5_9PHAE2.850e-1843.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUP4_ECTSI5.680e-1256.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig147contigP-littoralis_Contig147:476705..478352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size449
Hectar predicted targeting categoryother localisation
Exons2
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.9414346-UTR-P-littoralis_Contig147:476704..4767211680789694.9414346-UTR-P-littoralis_Contig147:476704..476721Pylaiella littoralis U1_48UTRP-littoralis_Contig147 476705..476721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.9558067-CDS-P-littoralis_Contig147:476721..4770701680789694.9558067-CDS-P-littoralis_Contig147:476721..477070Pylaiella littoralis U1_48CDSP-littoralis_Contig147 476722..477070 +
1680789694.9682395-CDS-P-littoralis_Contig147:478269..4783521680789694.9682395-CDS-P-littoralis_Contig147:478269..478352Pylaiella littoralis U1_48CDSP-littoralis_Contig147 478270..478352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig147.75.1prot_P-littoralis_Contig147.75.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig147 476722..478352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig147.75.1

>prot_P-littoralis_Contig147.75.1 ID=prot_P-littoralis_Contig147.75.1|Name=mRNA_P-littoralis_Contig147.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIP
LAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGSL
RFPAGWQTRLYYTTLGGQKKKGVPSLSPKTFMQKPAAALARFKT
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mRNA from alignment at P-littoralis_Contig147:476705..478352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig147.75.1 ID=mRNA_P-littoralis_Contig147.75.1|Name=mRNA_P-littoralis_Contig147.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1648bp|location=Sequence derived from alignment at P-littoralis_Contig147:476705..478352+ (Pylaiella littoralis U1_48)
GTAACAGCGTTTCCAGTATGGCACTCAATTTAGAGGTCTCCAACAAAGCG CCTGCGCTGCCAATCGACCTCACGGACGACCTCATGGATGCATTTGAGAT ATTTTCCGGGTGCTACGGCGGTTTGTCGCTCGGTCAGGCTTCCATGAAAG CCCTGCAGTGCATCCCTCTAGCCTGGGCTTGTCTCGCCATCAAAGAGTCA AGCAAGATGTCGAAAGACGCTCGTGACAGAGAGGCGTCACGGTGCTACCA GGAAGTTGCGCTTCCTGGCTGGATCAAGGTGTGCAACTTAGCAATCGAGC AGTCTGGCGGCTCTCTGCGTTTCCCAGCGGGGTGGCAAACGAGGCTCTAC TACACCACTCTTGGAGGTGCGTGCGCGCGTATAGCAGTTGGGGTAGACTG GTCACGATGATAAATCGCAGCGTGCACGGACCTCCAACCTCCATCGTGAT TGTGTTGTTTGGAGTAGCTTGTGTGCAGAGTTTAGACGGTGTACCGCGCG TACAGGTCCACAACAAAACGCTTGAAAAGCCAACGTATTTTTTTCAAAAT CCTGGTGAACCGGGCACAGCAGGAGTGACGTACGCACCCAGAAATGTGTA TGTGTGTTGTGTTTCTGTCCTATTTTATGCCAACAGCAGTCCCTCCGATC AAGGCGAGGCGTGTACTACACTTTTTCCGTGTATTCTCTTGCGGTGGTTT ATAGCGTTCTACAGTACGTGTATCTGTACAAGAATACAATATCAAACAGC GTGTATCTGTACAAGTAGGTACATACTTATTTGTTTTGTGCCCCAAACCT CCATGCTGAGTTCCACTGCTATCGCGACAAGCGTCCAGCTGTCTCTTTCG CTCGTCCACAATGAAATCGAAACTTGTGTCTACTCACGAGCGAAGCAAAG TACATACATTAAACTTAGCACCGCAACCACGATTACATGTACTTCGAAGT TTGATATTTTCGAGTAATTTATCTGTCCTCCATCAAACAGCGTGTGTGTG TGTTTGGTTTTGCATCAATCGCTGCCGAAGTTGCAGAGGCATGCAGTGGA CCCATGGTGCCGCGGCAGCAACATCTCTACAGCCGCAGGATAGCACATGC CGGCCTGAACGCTGCAACAAGCCATCTTGCACTCGACACTGTCTCTGTGC ATAGTCTACACCTAAAAATCATGACGTACAGCAGCAGTGGTCCCACGTTT GGGAGAACCGGTTCAGCGCAACTGTGATTGACAACGGTATTTAGGCAAAA GCAGTTGGCGTGATTGGGGTAAAACAATAGGGTTAGAGTTAGGGGACAGA TCGGCAGCAGTTGGAGAGGCAGCAGTACTACAAACAAGCCTGAGTCAAGG TGGAAAATCCACATGCAGCAGACAGCAGTCGCACATGCTGCGGCAGTGGT AGCTGCAACAGCACTAGCCGTGGGTGACATCAACAGCGGGCGACTAAAAG CAGCACTGCTGTTAGAAGATATTACCCAGACCTTGTGTGCAACCAAACAA TTGTGTTCGAACGGCACATCCTCTCATCTACACCGCCCAAAAACGCGGTG AATGCACCATCGCAGGCCAGAAGAAGAAGGGCGTGCCCTCCCTGTCTCCG AAGACTTTCATGCAGAAACCCGCAGCGGCTTTGGCAAGGTTCAAGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig147:476705..478352+

>mRNA_P-littoralis_Contig147.75.1 ID=mRNA_P-littoralis_Contig147.75.1|Name=mRNA_P-littoralis_Contig147.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig147:476705..478352+ (Pylaiella littoralis U1_48)
ATGGCACTCAATTTAGAGGTCTCCAACAAAGCGCCTGCGCTGCCAATCGA
CCTCACGGACGACCTCATGGATGCATTTGAGATATTTTCCGGGTGCTACG
GCGGTTTGTCGCTCGGTCAGGCTTCCATGAAAGCCCTGCAGTGCATCCCT
CTAGCCTGGGCTTGTCTCGCCATCAAAGAGTCAAGCAAGATGTCGAAAGA
CGCTCGTGACAGAGAGGCGTCACGGTGCTACCAGGAAGTTGCGCTTCCTG
GCTGGATCAAGGTGTGCAACTTAGCAATCGAGCAGTCTGGCGGCTCTCTG
CGTTTCCCAGCGGGGTGGCAAACGAGGCTCTACTACACCACTCTTGGAGG
CCAGAAGAAGAAGGGCGTGCCCTCCCTGTCTCCGAAGACTTTCATGCAGA
AACCCGCAGCGGCTTTGGCAAGGTTCAAGACC
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