mRNA_P-littoralis_Contig147.75.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5JVT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT0_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.720e-48 Identity = 81/128 (63.28%), Postives = 100/128 (78.12%), Query Frame = 3
Query: 18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGS---LRFPAGWQTRLYYTTLG----GQKKK 380
MALNLEVSN+APALP++LT+DLMD+F IF YGG GQ S KALQC P+AWACLA+KE+ K SK+ RDR+ SRCYQE+ALPGWIK+C+ AI +S S LRFPAG +++LY+ TLG G +KK
Sbjct: 1 MALNLEVSNRAPALPVELTNDLMDSFGIFCATYGGTPRGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYQEIALPGWIKLCHRAITESAESDNPLRFPAGLESKLYFPTLGVAIMGNRKK 128
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5KHV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV4_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.170e-42 Identity = 73/136 (53.68%), Postives = 90/136 (66.18%), Query Frame = 3
Query: 18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQ-EVALPGWIKVCNLAIE-------------------------QSGGSLRFPAGWQTRL 347
MAL+LEV+N+APALP++LT+DLMD+F IF YGG LGQ S KALQC P+AWACLA+KE+ K SK+ RDR+ SRCY E+ LPGWIK+CN AI +S LRFPAGW+T+L
Sbjct: 1 MALDLEVTNRAPALPVELTNDLMDSFGIFCATYGGTPLGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYHDEIELPGWIKLCNRAIASPRXMEXXXXXXXXXXXXXXXXESAESDNPLRFPAGWETKL 136
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5KB22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB22_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.030e-36 Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 3
Query: 18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAI 296
M L+LEV+N+A ALP++LT+DLMD+F IF YGG LGQ S KALQC P+AWACLA+KE+ K SK+ RDR+ SRCYQE+ALPG I +C+ AI
Sbjct: 1 MVLDLEVTNRASALPVELTNDLMDSFGIFCATYGGTPLGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYQEIALPGRITLCHRAI 93
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI) HSP 1 Score: 135 bits (340), Expect = 7.090e-35 Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 3
Query: 18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGSLRFPAGWQTRLYYTTLG-GQKKKGVPSLSPKTFMQKPAAALARFK 446
MA+N ++S KAP L IDLT+D+M F + +GG + QA +KALQC+P+A A LA+K+ M D R+ S+ QE+A+PGWIKVC AI+ S G L FP GW+ LYYTTLG G+ + +TFM+ P A +FK
Sbjct: 1 MAINFDISMKAPPLNIDLTEDMMWGFHRYCDKFGGRKMNQAGLKALQCVPIAHAALAVKQGEDMKSDVRNAAMSKRMQEIAVPGWIKVCEAAIKDSQGELVFPHGWKDALYYTTLGTGENPR-------QTFMKNPKALFTKFK 137
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5KFH5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH5_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.770e-27 Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 3
Query: 18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGSLRFPAGWQTRLYYTTLG 365
MA++ S KAP LPI+L++D M A F G YG ++ Q ++K LQ IPL + LA+KE+ KMS R+ AS+C QE+A+PG+IK+ A+ GG L+ P W+ +YYT+LG
Sbjct: 1 MAVDFPKSQKAPMLPINLSEDFMFALRKFCGTYGNKTMTQPALKMLQSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSIMGGPLQMPHKWKVMVYYTSLG 116
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5JXM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM3_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.700e-26 Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 3
Query: 18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGSLRFPAGWQTRLYYTTLGGQKKKGVPSLSPKTFMQKPAAALARFKT 449
MA++ S KAP LPI+ +D M A F G YG ++ Q ++K L IPL + LA+KE+ KMS R+ AS+C QE+A+PG+IK+ A+ G + P W+ +YYTTLG K KTFM+KP+ L +FK+
Sbjct: 105 MAVDFPKSQKAPMLPINRPEDFMFALRKFCGTYGNKTMTQPALKMLPSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSTMEGPPQMPHKWKVMVYYTTLGSGTSKA------KTFMEKPSTVLTKFKS 242
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: A0A6H5JUT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT5_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 2.850e-18 Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 3
Query: 18 MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACLAIKESSKMSKDARDREASRCYQEVALPGWIKVCNLAIEQSGGSLRFP 326
MA++ S KAP LPIDL++D M A F G YG ++ Q ++K LQ IP + LA+KE+ KMS R+ AS+C QE+A+PG+ K+ A+ G L+ P
Sbjct: 1 MAVDFAKSQKAPMLPIDLSEDFMFALRKFCGTYGNKTMTQPALKMLQPIPRVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGF-KLIEHALSTMDGPLQMP 102
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Match: D7FUP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP4_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 5.680e-12 Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 3
Query: 54 ALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPLAWACL-AIKESSKMSKDAR 224
ALP++ T+DLMDA E+ S +GG ++G+ASMKALQC PLAWACL A E+ + K+ R
Sbjct: 133 ALPVERTNDLMDAIEVISDTFGGAAIGEASMKALQCFPLAWACLTANNEAEQKQKNGR 190 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig147.75.1 >prot_P-littoralis_Contig147.75.1 ID=prot_P-littoralis_Contig147.75.1|Name=mRNA_P-littoralis_Contig147.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp MALNLEVSNKAPALPIDLTDDLMDAFEIFSGCYGGLSLGQASMKALQCIPback to top mRNA from alignment at P-littoralis_Contig147:476705..478352+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig147.75.1 ID=mRNA_P-littoralis_Contig147.75.1|Name=mRNA_P-littoralis_Contig147.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1648bp|location=Sequence derived from alignment at P-littoralis_Contig147:476705..478352+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig147:476705..478352+ >mRNA_P-littoralis_Contig147.75.1 ID=mRNA_P-littoralis_Contig147.75.1|Name=mRNA_P-littoralis_Contig147.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig147:476705..478352+ (Pylaiella littoralis U1_48)back to top |