mRNA_P-littoralis_Contig145.26.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.26.2
Unique NamemRNA_P-littoralis_Contig145.26.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: D7FZ49_ECTSI (NAD-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ49_ECTSI)

HSP 1 Score: 466 bits (1198), Expect = 4.000e-156
Identity = 259/386 (67.10%), Postives = 294/386 (76.17%), Query Frame = 1
Query:  325 MHKIVISGGLGLLGQRIIRHIFSTGLH-VRVLVVDTATPPVQGFDSAGSTAXXXXXXXXXXXXXXSKDEVLPGLSLKA--------------EIVRGDLACPHVAAAIKSFASGG-GCADSSATXXXXXXPSSLSLSSSLSVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCRQVGGRPRFVFASSIAAFGGGEEVMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYVKSE 1434
            M K V+SGGLGLLGQRI++HI S+G   VRV++VDTA  P+Q   S G                 +K EVL   + +                +VRGDL+   VAAAIKSFA G  G  D + T            SS+LSVFHLASVMSGQGE+DF EALRVNIDGTRSLLDTCRQ+GGRPRFVFASSIAAFGGGE+V D TKLLPQSTYGMTKACAELLVNDCTRKG+VDGRIARLPTV+VRPGPPNPAATGCFSSVPKAVL+G+HF+SPVS D  H C+ L SAV GLIR+HDASEAD G RDRAITLPAVSL+LRDLE+SA+RLARELGR  GTVSYEP++A+EAVVKAMPSAV+ SNR  NLGL+E AGA E+V++YVK E
Sbjct:    1 MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTA--PLQAAKSGGPPTAAPGITGDPAVGNGAKCEVLGSSTARGAAAPIADDSSTGAVSVVRGDLSSSDVAAAIKSFAVGDDGGGDHAETTS----------SSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLCSAVDGLIRLHDASEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTANLGLLESAGAHEIVEDYVKGE 374          
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: A0A6J4K8H2_9BACT (Epimerase domain-containing protein n=1 Tax=uncultured Armatimonadetes bacterium TaxID=157466 RepID=A0A6J4K8H2_9BACT)

HSP 1 Score: 208 bits (530), Expect = 1.320e-57
Identity = 122/248 (49.19%), Postives = 158/248 (63.71%), Query Frame = 1
Query:  697 SVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCRQVGGRPRFVFASSIAAFGGG----EEVMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYVK 1428
            S+FHLAS++SG+ E+ FD+ALRVN+DG R+L +  R++GGR R VFASSIA FGG     E   D TKL PQ+TYGMTKA  EL++ND TRKG+ DGR ARLPTVI+RPG PN AA+G  S + +  LNG     PV  D  HP     + V  LI +HD   A +G RDRAI LPA S+T R  E++  ++ARELG   G +   P+  I+ +V   P AV  S RA  LGL        ++ +Y++
Sbjct:   89 SIFHLASMVSGECEERFDDALRVNLDGGRNLFEAARELGGRTRLVFASSIACFGGDAAMPEPCTDQTKLTPQTTYGMTKAVCELMINDYTRKGFFDGRSARLPTVIIRPGKPNTAASGWASGMFREPLNGATCSLPVRRDQRHPMTGHRTVVDSLIAVHDLPSASIG-RDRAIGLPATSVTPRLAERALRQVARELGLPLGAIEERPDPRIQGIVDHWPVAVDGS-RALALGLPPVPPLQTIIRDYLE 334          
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: A0A2S6UCI5_9PROT (Putative epimerase/dehydratase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6UCI5_9PROT)

HSP 1 Score: 202 bits (515), Expect = 9.550e-56
Identity = 118/251 (47.01%), Postives = 162/251 (64.54%), Query Frame = 1
Query:  694 LSVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCRQVGGRPRFVFASSIAAFGGG---EEVMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYVKSEW 1437
            + VFHLASV+S  GEQDFD A+RVN DG R +L+  R   G PR V ASS+A FGG    E V + T+++PQ+TYGMTKA  EL++ND TRKG++DGR ARLPTVI+RPG PN AA+G  S V +  L+G+ +V PV+ D     I   SA+ GL  + DA    +G  DR + LP  +  + D+  +  R+A E G + G V+ +P+ AIEA+VK+ P A++ S RA  LGL  D     ++ EY+ ++W
Sbjct:   70 IGVFHLASVVSAGGEQDFDLAMRVNFDGGRHILEALRARKGTPRIVLASSLAVFGGPDMPEAVTEMTRVVPQTTYGMTKAIGELMINDYTRKGFIDGRAARLPTVIIRPGAPNAAASGFASGVFREPLSGQDYVLPVAMDTRMMVIGARSAIAGLTGLMDADGEGLGA-DRVVNLPNNAYAVTDMIAALERVAAENGITFGPVTPKPDPAIEAIVKSWPLAMEDS-RARALGLPADESLEAIIREYI-ADW 317          
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: A0A2E6QK31_9PROT (NAD-dependent epimerase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QK31_9PROT)

HSP 1 Score: 202 bits (515), Expect = 1.130e-55
Identity = 114/248 (45.97%), Postives = 163/248 (65.73%), Query Frame = 1
Query:  694 LSVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCRQVGGRPRFVFASSIAAFGGG---EEVMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYVK 1428
            +SVFHLASV+SG GE+DFD A+RVN+DG+R++ + CR+ G  PR VFAS++A FGG    + V D TK +PQ+TYGMTKA  EL++ND TRKG+ DGR ARLPTVI+RPG PN A +G  S + +  LNG  +V     +   P IS+  AV+G I +H+A    +G  DRA+ LP++S+T+ ++  S  R+A +  R  G +  EP+  +E+V    P     ++RAT+LGL  D    ++V  Y++
Sbjct:   78 ISVFHLASVVSGGGEKDFDLAMRVNLDGSRAVFEACRKRGSTPRMVFASTLATFGGSAMPKTVGDTTKQVPQTTYGMTKAACELMINDYTRKGFFDGRSARLPTVIIRPGKPNLALSGFASGIFREPLNGIDYVCAAGLETRMPVISVRMAVEGFIALHEAPGDAIG-EDRAVGLPSLSVTVAEMIDSLQRVAGD--RPLGAIKVEPDPLVESVCSTWPFYTD-NSRATSLGLPLDESLDDIVRGYIE 321          
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: A0A4D9D647_9STRA (Epimerase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D647_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.600e-55
Identity = 115/251 (45.82%), Postives = 161/251 (64.14%), Query Frame = 1
Query:  694 LSVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCR------QVGGRP-RFVFASSIAAFGGGEEVMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYV 1425
            +++FHLASVMSG+GE++FD+ + VN+DGT++LL+  R      +VG +P RFVF SS AAFG   EV D TKL PQSTYGMTKA  EL+VND TRKG+VDGR  RLPTVIVRPG  N A+TGCFS+V + +L G  +V P      HP IS    ++GL+ + +     +G  DR++ LPA+  T+ +L     ++A+  G   G VS + +  +  +V   P  ++ S RA +LGL  D     ++++YV
Sbjct:  101 VTIFHLASVMSGEGEEEFDKCVAVNLDGTQNLLEKARALHASGRVGEKPVRFVFPSSFAAFGPHPEVSDETKLTPQSTYGMTKAVGELMVNDYTRKGWVDGRTGRLPTVIVRPGNKNGASTGCFSAVVRELLMGHDYVIPYDPRQTHPVISTRRTIKGLLALAEVEGESLGG-DRSVNLPALQTTMEELLFHTRQIAQGRGIPMGEVSVKIDPWVSGIVGRFPQVMR-SPRAESLGLPRDGSVEAVIEDYV 349          
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: A0A843RJW1_9PROT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RJW1_9PROT)

HSP 1 Score: 199 bits (505), Expect = 3.180e-54
Identity = 118/248 (47.58%), Postives = 155/248 (62.50%), Query Frame = 1
Query:  694 LSVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCRQVGGRPRFVFASSIAAFGGGEE---VMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYVK 1428
            +SVFHLASV+SG GE+DFD A+RVN+ G  ++ + CR    +PR VFASSIA FGG      V D  K  PQ+TYG TKA  ELLVND TRKG+ DGR ARLPTVIVRPG PN AA+   S + +  LNGE    PVS D + P +   S V GLI +H+A  A +G  DRA++LP+ ++T+RD+  S  R+A    R  G + ++P+  I+ +    P       RAT LGL  DA    +V+ Y++
Sbjct:   80 VSVFHLASVVSGGGEKDFDLAIRVNLTGGLNVFEACRARACQPRLVFASSIAVFGGSTMAPVVGDHAKQTPQTTYGATKAICELLVNDYTRKGFFDGRSARLPTVIVRPGKPNAAASSFVSGLFREPLNGEVCRIPVSEDTVMPLLGYRSIVGGLIALHEAESAALGD-DRAVSLPSFTVTVRDMIDSLKRVAG--ARKLGEIVFQPDPFIQRICDGWPRDASYE-RATKLGLPRDASLDAIVENYIE 323          
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: UPI001F0D324E (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001F0D324E)

HSP 1 Score: 198 bits (503), Expect = 3.480e-54
Identity = 116/248 (46.77%), Postives = 159/248 (64.11%), Query Frame = 1
Query:  694 LSVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCRQVGGRPRFVFASSIAAFGGG---EEVMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYVK 1428
            +SVFHLASV+SG GE DFD A+RVN+ G  ++ + CR   G PR VFASSIA FGG      V D  K  PQ+TYGMTK   ELLVND TRKG++DGR ARLPTVIVRPG PN AA+   S + +  LNGE    PV+ + + P +   S V G I +H+A    +G  DRA++LP+ ++++ ++ ++ +R+A   GRS G + +EP+  IEA+    P      +RAT LGL +DA    +V+ Y++
Sbjct:   60 ISVFHLASVVSGGGELDFDLAMRVNLHGGLNVFEACRARSGLPRLVFASSIAVFGGAGMPAVVGDHVKQTPQTTYGMTKTICELLVNDYTRKGFLDGRSARLPTVIVRPGKPNQAASSFVSGLFREPLNGEVCRIPVAPETMMPVLGYRSIVGGFIALHEADGEALGD-DRAVSLPSFTVSVAEMIEALNRVAS--GRSLGEIVFEPDPFIEAICAGWPQDAS-HDRATALGLPKDASLDVIVENYIE 303          
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: A0A849E7C3_9HYPH (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Anderseniella sp. TaxID=1872568 RepID=A0A849E7C3_9HYPH)

HSP 1 Score: 196 bits (497), Expect = 4.610e-53
Identity = 112/248 (45.16%), Postives = 158/248 (63.71%), Query Frame = 1
Query:  694 LSVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCRQVGGRPRFVFASSIAAFGGG---EEVMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYVK 1428
            +SVFHLASV+SG GE+DFD A+RVN+ G  ++ +  R     PR VFASSIA FGG    + V D  K  PQ+TYGMTKAC ELL+ND TRKG++DGR ARLPTVIVRPG PN AA+   S V +  L GE    PV  + + P +   + V+G++ +H+     +G  DRA++LP++ +T+ D+  +  R+A    R  G ++ EP+  IEA+V++ P A   + RA  LGL +D    ++V  Y++
Sbjct:   80 ISVFHLASVVSGGGEKDFDLAIRVNLTGGMNIFEALRARASTPRLVFASSIAVFGGDHMPDVVGDHGKQTPQTTYGMTKACCELLINDYTRKGFLDGRSARLPTVIVRPGVPNAAASSFASGVFREPLKGEPCALPVKLETVMPVLGYRNIVEGILALHELPSEKLGD-DRAVSLPSMDVTVADMVDALKRVAHN--RKLGEITVEPDPFIEAIVRSWPVATDDA-RALALGLPKDNSLDDIVHHYIE 323          
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: A0A437QH10_9PROT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QH10_9PROT)

HSP 1 Score: 195 bits (495), Expect = 8.860e-53
Identity = 114/247 (46.15%), Postives = 155/247 (62.75%), Query Frame = 1
Query:  694 LSVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCRQVGGRPRFVFASSIAAFGGG---EEVMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYV 1425
            + VFHLASV+SG GE+DFD A+RVN+DG R +L+ CR +G  PR +F SSIA FGG    + V D  K  PQ+TYGMTKA  EL++ND TRKG++DGR ARLPTVI+RPG PN AA+  FS + +  L G     PV  D  HP I   + V G++ +++A    +G  DRA TLP+ S T+ +L  +  R+A +  R  G  + EP+  I+ +VK  P A   ++RA  LGL  D    ++V  Y+
Sbjct:   80 IGVFHLASVVSGGGEKDFDLAMRVNLDGGRYVLEACRALGSAPRVLFTSSIATFGGAAMPDVVGDLVKQTPQTTYGMTKAVLELMINDYTRKGFLDGRSARLPTVIIRPGKPNAAASSFFSGMFREPLAGVECKIPVPPDVRHPVIGYRTVVDGILALYEADSDAIGD-DRAFTLPSTSATVAELMDALDRVAGD--RPLGKRTVEPDPFIQDIVKNWPRAAG-ADRALALGLPHDNSLDDIVRAYI 322          
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Match: UPI001D04B801 (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001D04B801)

HSP 1 Score: 196 bits (497), Expect = 1.390e-52
Identity = 143/392 (36.48%), Postives = 196/392 (50.00%), Query Frame = 1
Query:  301 PGS---VHARNMHKIVISGGLGLLGQRIIRHIFSTGLHV----------RVLVVDTATPPVQGFDSAGSTAXXXXXXXXXXXXXXSKDEVLPGLSLKAEIVRGDLACPHVAAAIKSFASGGGCADSSATXXXXXXPSSLSLSSSLSVFHLASVMSGQGEQDFDEALRVNIDGTRSLLDTCRQVGGRPRFVFASSIAAFGGG---EEVMDGTKLLPQSTYGMTKACAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNGEHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSLTLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATNLGLVEDAGAFEMVDEYVK 1428
            PGS      R   K+VI+GG G +GQR+ + +   G              +L+ D A PP +                         DE       + +I+ GD++ P   AA+                              +SVFHLASV+SG GE+DFD ALRVN+ G  ++ + CR     PR VFASSIA FGG      V D  K  PQ+TYG TKA  ELLVND TRKG+ DGR ARLPTVIVRPG PN AA+   S + +  LNGE    PVS D + P +   + V G I +H+A  AD+   DRA +LP+ ++T+RD+  +  R+A +  R  G + ++P+  I+ +    P       RAT LGL +DA    +V+ Y++
Sbjct:   32 PGSWRRERGRQAVKVVITGGTGFIGQRLAQALLQRGGLTAPSGSQEPIDELLLFDVAEPPQR---------------------PAWADE-------RVKILSGDISDPAQVAALVDR-------------------------DDISVFHLASVVSGGGEKDFDLALRVNLTGGLNVFEACRARASLPRVVFASSIAVFGGAGMAPVVGDHAKQTPQTTYGATKAICELLVNDYTRKGFFDGRSARLPTVIVRPGKPNAAASSFVSGLFREPLNGETCRIPVSEDTVMPVLGYRAIVGGFIALHEADGADLDD-DRAFSLPSFTVTVRDMIDALRRVAGD--RKLGEIVFKPDPFIQRICDGWPKDASYE-RATKLGLPKDASLEAIVENYIE 366          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.26.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ49_ECTSI4.000e-15667.10NAD-dependent epimerase/dehydratase n=1 Tax=Ectoca... [more]
A0A6J4K8H2_9BACT1.320e-5749.19Epimerase domain-containing protein n=1 Tax=uncult... [more]
A0A2S6UCI5_9PROT9.550e-5647.01Putative epimerase/dehydratase n=2 Tax=Alphaproteo... [more]
A0A2E6QK31_9PROT1.130e-5545.97NAD-dependent epimerase n=1 Tax=Rhodospirillaceae ... [more]
A0A4D9D647_9STRA2.600e-5545.82Epimerase domain-containing protein n=3 Tax=Monodo... [more]
A0A843RJW1_9PROT3.180e-5447.58NAD-dependent epimerase/dehydratase family protein... [more]
UPI001F0D324E3.480e-5446.77NAD-dependent epimerase/dehydratase family protein... [more]
A0A849E7C3_9HYPH4.610e-5345.16NAD-dependent epimerase/dehydratase family protein... [more]
A0A437QH10_9PROT8.860e-5346.15NAD-dependent epimerase/dehydratase family protein... [more]
UPI001D04B8011.390e-5236.48NAD-dependent epimerase/dehydratase family protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:105617..110821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZ49
PFAMsEpimerase
Model size2148
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.94e-161
EggNOG OGsCOG0451@1|root,KOG2774@2759|Eukaryota
Ec32 ortholog descriptionNAD-dependent epimerase/dehydratase, N-terminal domain
Ec32 orthologEc-02_006280.1
DescriptionL-threonine 3-dehydrogenase activity
Cds size1122
COG categoryGM
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.26.2prot_P-littoralis_Contig145.26.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 105941..110119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789681.305423-UTR-P-littoralis_Contig145:105616..1059401680789681.305423-UTR-P-littoralis_Contig145:105616..105940Pylaiella littoralis U1_48UTRP-littoralis_Contig145 105617..105940 +
1680789681.4097507-UTR-P-littoralis_Contig145:110119..1108211680789681.4097507-UTR-P-littoralis_Contig145:110119..110821Pylaiella littoralis U1_48UTRP-littoralis_Contig145 110120..110821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789681.3155997-CDS-P-littoralis_Contig145:105940..1063911680789681.3155997-CDS-P-littoralis_Contig145:105940..106391Pylaiella littoralis U1_48CDSP-littoralis_Contig145 105941..106391 +
1680789681.3266232-CDS-P-littoralis_Contig145:106928..1070531680789681.3266232-CDS-P-littoralis_Contig145:106928..107053Pylaiella littoralis U1_48CDSP-littoralis_Contig145 106929..107053 +
1680789681.3377013-CDS-P-littoralis_Contig145:107555..1076111680789681.3377013-CDS-P-littoralis_Contig145:107555..107611Pylaiella littoralis U1_48CDSP-littoralis_Contig145 107556..107611 +
1680789681.3565931-CDS-P-littoralis_Contig145:107984..1080991680789681.3565931-CDS-P-littoralis_Contig145:107984..108099Pylaiella littoralis U1_48CDSP-littoralis_Contig145 107985..108099 +
1680789681.373464-CDS-P-littoralis_Contig145:108794..1089191680789681.373464-CDS-P-littoralis_Contig145:108794..108919Pylaiella littoralis U1_48CDSP-littoralis_Contig145 108795..108919 +
1680789681.3872256-CDS-P-littoralis_Contig145:109477..1095711680789681.3872256-CDS-P-littoralis_Contig145:109477..109571Pylaiella littoralis U1_48CDSP-littoralis_Contig145 109478..109571 +
1680789681.399884-CDS-P-littoralis_Contig145:109963..1101191680789681.399884-CDS-P-littoralis_Contig145:109963..110119Pylaiella littoralis U1_48CDSP-littoralis_Contig145 109964..110119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.26.2

>prot_P-littoralis_Contig145.26.2 ID=prot_P-littoralis_Contig145.26.2|Name=mRNA_P-littoralis_Contig145.26.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=374bp
MHKIVISGGLGLLGQRIIRHIFSTGLHVRVLVVDTATPPVQGFDSAGSTA
AGSGDRGGGDGDGGSKDEVLPGLSLKAEIVRGDLACPHVAAAIKSFASGG
GCADSSATAAATTTPSSLSLSSSLSVFHLASVMSGQGEQDFDEALRVNID
GTRSLLDTCRQVGGRPRFVFASSIAAFGGGEEVMDGTKLLPQSTYGMTKA
CAELLVNDCTRKGYVDGRIARLPTVIVRPGPPNPAATGCFSSVPKAVLNG
EHFVSPVSSDFLHPCISLSSAVQGLIRMHDASEADMGTRDRAITLPAVSL
TLRDLEKSASRLARELGRSSGTVSYEPENAIEAVVKAMPSAVQVSNRATN
LGLVEDAGAFEMVDEYVKSEWQR*
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mRNA from alignment at P-littoralis_Contig145:105617..110821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.26.2 ID=mRNA_P-littoralis_Contig145.26.2|Name=mRNA_P-littoralis_Contig145.26.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5205bp|location=Sequence derived from alignment at P-littoralis_Contig145:105617..110821+ (Pylaiella littoralis U1_48)
TTACGCAATTGACTGGAGGAAAGGTGCCCAGTTCAGAATTCTACACTCAC CCTTGTACGAAGAAGTTGCTATTCGGTCACCCCACAGAGAAAACGAGCCT CGAGCCTCGGGCAATGCGAGTTTCTTAAAGTGGTGGCCGCACCTGTACGC ATATCCTGCACTCCTGGCTGCGTCATGCTTTTCAGCACTTATTCGGCGTG ATCCGTCTCTGCACCATACACGCATGTGACCGTAGCAGCCCAACCAATTT GGGAGTCCGCCAAACACATTCCCATTCCTTTCGAAGGCGTTTGATCCTAA CCTGGTTCCGTGCATGCCAGGAACATGCACAAGATCGTGATATCGGGAGG CTTGGGCCTGCTGGGGCAAAGGATCATTCGGCACATTTTTTCCACTGGCC TTCACGTCCGCGTGCTGGTGGTGGACACGGCTACTCCTCCTGTACAGGGG TTCGATAGTGCTGGCTCCACTGCTGCTGGCAGTGGTGATAGAGGTGGGGG TGACGGCGATGGCGGCAGCAAGGACGAAGTATTGCCAGGCCTGTCATTGA AAGCTGAGATCGTGAGGGGGGATCTCGCGTGCCCCCATGTGGCGGCTGCG ATCAAGAGCTTCGCGAGTGGCGGCGGTTGTGCCGATAGTAGTGCGACGGC AGCAGCAACAACAACACCATCATCTCTGTCCTTGTCTTCATCTCTGTCCG TGTTTCATCTAGCGTCTGTCATGAGCGGGCAAGGGGAACAAGACTTTGAC GAGGCCCTACGCGTCAATATCGACGGTGCGGATGAAACAATTGTTTGCAA TTCAAAACAAAAGTGGCTGAAGTATTTGTAAAGGCCGGGCGCGGAGAAAA ATCTTGCCTAATATCAACGGGAACAAAACTTCAACGAGGCTCTCCGTGTC AATATCGACGGTACGGATGATGAATGGTTTGCATAATATAAAATGACCAA AGTATCTGGAAAGGCCCAGCGCGGTGCCAAATCTTGGCTTATCTCGGCGT CTTCAGAGGTACAGCAGTATTACTACAGATCACGGGTGTAAGACTCGCAA AAGTGTGATAGAAGCGCCAGCAAGGGAAGTCCCAGGAAGCGTGTACAGTG TCCGGTGGTCTTGTTCTTAGAGCGCAGGCTTGGGTCGGCGGGCCTTGACA ACTGCTGTGAGCCCACTCCGCTAAGATATCCGCGCTTATTAACAAAACAT GCGCTTCCCCCTTTTTTTTGTATATTTTCCCGGTTTTTTCTTCCGTCCGT ATGTGTGAATGGATGAATGGATGAATGAATGAAAAAATGAATTGGTGGGT GGATGGATGAAGGCACCAGGTCGCTACTGGACACGTGTCGCCAGGTGGGA GGCAGGCCCCGGTTTGTGTTCGCAAGCTCCATCGCCGCCTTCGGGGGAGG CGAAGAAGTGATGGATGGGACCAAGCTTCTCCCTCAGGTTTGATACATTT TGACATACACACCTAGGTTTGTCGATATGGCAGGCACGCATATCGTCAGG TATAACCATGACTACATTGGCCAGGAGGCAGTGTGAATGCTCTCAGTCTG TGTCGGCTTTTGTGCGAGGATCTACAGCTGCAGCAATAGTAGTTTGGCAG CACTTTGGATGGGGGGGGGCGGGAAGGTGTTCGTCTGTTCGACGCACGCT ACAAAACAGTTTTGAACACGCCATCGTCCGCCATCCGGCTAAGGAGGCAT GCTGTCCTTCCCTTGCTTACGAAAACCTCACGCCGAAAGCGCTTGCTCTG CTACCATCTTGAGGTTGGGGTCTTTCAAAGAAATCACCGTGACGATGTCG AGTTTCAACCTCGGCGGGTTTTGCACCTCGTCGTTTCGTCGGTTGCTCCT CTCGATCGCCCCACGGCGTAATCTTATTCCTACTTATCGAACGAATGGTG CGCCGTGCATTCCTCGGCGTGATCGAATGGTGAAGACAGAGTACCTACGG GATGACGAAGGCCTGCGCGGAGCTGCTCGTCAACGACTGCACCAGGTGCC GTTTATTTTGTTGGGAGCGGTGTATGCAAGCTTGCGCACGAGAGGAAGCA TTTTGAGCTTTTCTCAATGCTCGTGAGGCTGCTGTGTGCGTGTGGGTGCT GCAGAACAATAATGGTCGTACGAGCTGTCATCTCAGAAGACGCACATGCG TCGGGAGCATCGTTGTCGGTGTGGCCAGTCACTGCGTTACGCGCGCGCCT CGGTCTCTGTGTAAGTGTTTGTTTTGCCCATTCAGAACCCAAAAAGAAAA ATTTCGGGAGTTTTCCACGTCGCTATGTAGTCCAAGTTGGCGTCATCGCT GTTCAAATTTCAGCATATCTCTTGCGTTGAGGTTTTCGTGCTACTTTCGT TTGTGTCGGTGTCCGCAGAAAGGGGTACGTCGACGGCCGCATCGCACGGC TACCGACGGTGATCGTCAGGCCAGGCCCTCCCAACCCAGCGGCGACGGGC TGCTTCAGTTCGGTACCGAAAGCCGTATTGAATGTAAGTACTTTTTTTTG GGTGTGATTGTATAAACCAACATTGTGTGTGGGTGTGTATCGTGGTGTGT GTGTCTTTGTGTGTATTTGTATGCCGGCGGCTTTCGCGTGAAAATTTTCA ATGGGTAAGTTCCGCCGAAAACAGGTGCTTCTCGTTGCTTGTCTCATGCG CCATTGGTTCGCTTTCTGCACGTACGTAAGCGACACATCTGTGACCAGAG TTCGCGACATGGGCGCCGGTCGTCGTAATGCCGAAACGCTGTACCTCGGC CGGTTTTGTGTATTGTTTATGACTTCGTGCCTTGTCCTCGTTTTTAATAA TCCCGGTCCATTGCAATGGAAGCAGCGGCAGCAGAAAGAGCACACATGGT GACTTCCAGCGATAATGATATATTACGGGAATTGTTGATTGGACAAAGCA ACACATGCCCCATCGCTCTTCGACCCTACAAATGCACGCAGCAGAACCAT GCCCACACGACAGTTTGCCTCTGCACTACCTGAGGTTGGTATTTTCACTC ATTGTTCATTGACATGGGCACAGAAAGTGGTGTAGCTGGAGAACCCAAGC TTTGGACATATTCTGAAAGCTTTGTCCCCAACATGCCTACGTGACGGACA TTACCACCCGCCTGTTTCCCCCGCGTATTTGCGCCGCTTGTTTGCGCCCT ACCGTTGTCGGTCACGCTATGGATGCAGGGGGAGCACTTTGTCTCGCCGG TGTCCTCCGATTTTCTGCACCCCTGCATAAGCCTCTCCTCGGCTGTTCAG GGCTTGATTCGTATGCACGACGCATCCGAGGCCGACATGGGAACGAGAGA TCGGTCAGTGCACCACATACAGTTCCAATTATGAATCTCTTGATTGATCT CTGCTGGTTGTATACGGTGGCCAGTCATGTTTCCGCACAGACTAAATAGC GTGGTGGATACTGTTCACTATAAATTTTCCAGCTATGACAAGTTTCTCGT CCGCCCGCTAGGTAAGGGATTCAGGGGGCGGGAGGATGCGCGTAGGAGAG TGTGTTCGCACAGCAAAGATGCGGTCAATATCGTACGTGTTCGTTGTTGT TGGGTAAAAATACTCAGATCAGATCAGCGTTTCATGTATCTCTTTTATCG TGGCAAAAAATGCCTTCGATTGTGGAGGAATTGTCAACCACGGTGAAATG CCTTGAGTGTGTAGATTATGATGCCACCCCGTCCAGGATAGTTAGTCCAC CTTTGCGCTAAAATCCGCTCTTACGTTTGTCTGGTTCTATACGCCCTGGG TCTCTGATGGGATACTTCAGAGGTCTTTTGACTCTGACATGCATACGTTT GTCTTGCCCCGCCCCCCCGCCTCCCGCGCGATTCGTTTTGTTTTCTCCGT TCGGTCTACAGCGCGATAACCCTACCGGCAGTAAGTCTTACCCTGCGCGA CCTCGAGAAAAGTGCGTCGCGGCTTGCTCGAGAGCTTGGCCGATCTTCCG GGACGGTGAGTCGTTACGTACAGTTTCCAGTGTCTGGAAGCATGTAGCAA TTTTGTTCCTGCGTTTGCCCTGGGAGAGCACTCCCAAGAAACCTGACGTA CAACCCGATTTGATTACTCCATCCCTCCTGTATAGCAACACATTTGGTAC TCCTGCCGTACTGCTGTCGTACTGCTGTCGTACTGCCGTTTACATATGTA CAAGCTGGTAGTATCGCACCTGAAGGAGAATCTATCAAGGTCAGGAATAT GCCACACCATCGATCCCGCCAATTTTTTAAACATGAGTAAGTACATCGCG AAGTCACAAAACACCAAGCATCCATGGTGTGCGGGCTCGGTGCCGCCTTC CCGCCATATCTCTCGATCCCGCCTCGTATGCATTTTTCCCCTACAAGGTT TCGTACGAGCCAGAAAACGCGATTGAGGCCGTAGTGAAGGCGATGCCGTC GGCTGTACAGGTATCCAACAGGGCTACCAACCTCGGACTAGTTGAAGATG CAGGGGCATTCGAGATGGTTGACGAATATGTGAAGAGCGAATGGCAAAGA TAGCCGATGACAAGCAGTGCGTCATACGGGTGGAGAAGATAACCGATGGC GAACAGCAGTGTATAATGTGGGATGCTCCCATTGCAAACATCAATCAGTA CCGTTTTCTCGGTTTGGCTTCGAGGCTGGTGTCGACACGACAACGGGACG TCGCCCTCGACCAAGAGGATACCTGTGAACATTTTCACATTATGTACGTC CTGCGTAGACTAATTAATGATCGGTGAGCTTTCGTATCATACGCTCACGA CTCGCAACGAACGCTTGATTGACCAGACAACTGCTGTTTGCTGTGTGTAG GACTCTCACAAAGAGTCTCGGCGGTTGATGAGGCCTTGTTCTCTTTGTGT TGTGTAGTTTGAGAGAGGGCTTAGACGCTGGAGCTCTCTTGGGGTTGGTT CGGGAGTGCCCCAATCGACCCCTTCGATGGATGAAGAAATACTTGAGAGT AGAGCAGACTACTGCTGTAGTATGTTAGAAAGAAGGATTCATTGTTTTTT GGTAAGACTAAATGAACATTGATCATTGTGCACTAGCTCTTGTCCAGTCA TTCCTCTCGACATGAAAACCACGCATCATGTGTGCTACTACGGGTGTTAA CCTTTACTTCGAAGTATTATTTTTCTTGCTAGCTCCATTGCGTTCCACCA AAACACTGACTTCTGTCTTGCAATCCTTCATGACATGAAAAAAAAACAAT TCTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig145:105617..110821+

>mRNA_P-littoralis_Contig145.26.2 ID=mRNA_P-littoralis_Contig145.26.2|Name=mRNA_P-littoralis_Contig145.26.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1122bp|location=Sequence derived from alignment at P-littoralis_Contig145:105617..110821+ (Pylaiella littoralis U1_48)
ATGCACAAGATCGTGATATCGGGAGGCTTGGGCCTGCTGGGGCAAAGGAT
CATTCGGCACATTTTTTCCACTGGCCTTCACGTCCGCGTGCTGGTGGTGG
ACACGGCTACTCCTCCTGTACAGGGGTTCGATAGTGCTGGCTCCACTGCT
GCTGGCAGTGGTGATAGAGGTGGGGGTGACGGCGATGGCGGCAGCAAGGA
CGAAGTATTGCCAGGCCTGTCATTGAAAGCTGAGATCGTGAGGGGGGATC
TCGCGTGCCCCCATGTGGCGGCTGCGATCAAGAGCTTCGCGAGTGGCGGC
GGTTGTGCCGATAGTAGTGCGACGGCAGCAGCAACAACAACACCATCATC
TCTGTCCTTGTCTTCATCTCTGTCCGTGTTTCATCTAGCGTCTGTCATGA
GCGGGCAAGGGGAACAAGACTTTGACGAGGCCCTACGCGTCAATATCGAC
GGCACCAGGTCGCTACTGGACACGTGTCGCCAGGTGGGAGGCAGGCCCCG
GTTTGTGTTCGCAAGCTCCATCGCCGCCTTCGGGGGAGGCGAAGAAGTGA
TGGATGGGACCAAGCTTCTCCCTCAGAGTACCTACGGGATGACGAAGGCC
TGCGCGGAGCTGCTCGTCAACGACTGCACCAGAAAGGGGTACGTCGACGG
CCGCATCGCACGGCTACCGACGGTGATCGTCAGGCCAGGCCCTCCCAACC
CAGCGGCGACGGGCTGCTTCAGTTCGGTACCGAAAGCCGTATTGAATGGG
GAGCACTTTGTCTCGCCGGTGTCCTCCGATTTTCTGCACCCCTGCATAAG
CCTCTCCTCGGCTGTTCAGGGCTTGATTCGTATGCACGACGCATCCGAGG
CCGACATGGGAACGAGAGATCGCGCGATAACCCTACCGGCAGTAAGTCTT
ACCCTGCGCGACCTCGAGAAAAGTGCGTCGCGGCTTGCTCGAGAGCTTGG
CCGATCTTCCGGGACGGTTTCGTACGAGCCAGAAAACGCGATTGAGGCCG
TAGTGAAGGCGATGCCGTCGGCTGTACAGGTATCCAACAGGGCTACCAAC
CTCGGACTAGTTGAAGATGCAGGGGCATTCGAGATGGTTGACGAATATGT
GAAGAGCGAATGGCAAAGATAG
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