mRNA_P-littoralis_Contig145.23.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.23.2
Unique NamemRNA_P-littoralis_Contig145.23.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5K6P0_9PHAE (C2H2-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P0_9PHAE)

HSP 1 Score: 470 bits (1210), Expect = 1.240e-159
Identity = 251/365 (68.77%), Postives = 284/365 (77.81%), Query Frame = 2
Query:   59 MSLSSPLSHALLKELRKLKDA--------KERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGAPSQHPPDAAAPAAKKRKF-DRGKKDRERAAHGTLGGNILNAFAIGSGKPIERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHSLISKWAKEEDENVRLAADDVMKNLMAKQQPK 1126
            MSLS+PLSH LLK+L KL++         K+RGLILDRHFET+K HVK GNSVA  RWDAIE+   L+QT VF+EEEW+TQIDGE QGI SSTR S    QDAGGARGAPS HPP A A AA KRK  DRGK+ R+RAA G LGGNI+NAFA GSGKPIERTRGGV E VSGI+FPPPAP  R  CPHCPMTFVNEQGLG HV TQHS ANM NGLRLQRMLG+ P G V PW +AGPGRCW VK+DGATGAASFVLQRK F  +DL+SDGF   D+K K TRGA +   Y FRFKA+V+ QLR+LQE A +L++ EQLTP QYLE  LKV++SLI KWA++E   V+ AADDV K L+AK QPK
Sbjct:    1 MSLSNPLSHGLLKDLGKLQERVSSTXQELKQRGLILDRHFETIKAHVKAGNSVAKERWDAIENAWGLKQTGVFNEEEWITQIDGEAQGITSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRGKQARDRAAQGVLGGNIINAFARGSGKPIERTRGGVIEHVSGINFPPPAPERRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQPWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKCKLYDFRFKAYVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKHQPK 363          
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5K4R4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R4_9PHAE)

HSP 1 Score: 485 bits (1249), Expect = 6.970e-159
Identity = 255/361 (70.64%), Postives = 285/361 (78.95%), Query Frame = 2
Query:   59 MSLSSPLSHALLKELRKLKDAKERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGAPSQHPPDAAAPAAKKRKF-DRGKKDRERAAHGTLGGNILNAFAIGSGKPIERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHSLISKWAKEEDENVRLAADDVMKNLMAKQQPKGTHP 1138
            MSLS+PLSH LLK+L KL + K+RGLILDRHFET+K HVK GNSVA  RWDAIE+   L QT VF+EEEW+TQIDGE QGI SSTR S    QDAGGARGAPS HPP A A AA KRK  DRGK+ R+RAA G LGGNI+NAFA GSGKPIERTRGGV E VSGI+FPPPAP  R  CPHCPMTFVNEQGLG HV TQHS ANM NGLRLQRMLG+ P G V PW +AGPGRCW VK+DGATGAASFVLQRK F  +DL+SDGF   D+K K TRGA +R RY FRFK HV+ QLR+LQE A +L++ EQLTP QYLE  LKV++SLI KWA++E   V+ AADDV K L+AKQQPK   P
Sbjct:    1 MSLSNPLSHGLLKDLGKLSELKQRGLILDRHFETIKAHVKAGNSVAKERWDAIENAWGLEQTGVFNEEEWITQIDGEAQGITSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRGKQARDRAAQGVLGGNIINAFARGSGKPIERTRGGVTEHVSGITFPPPAPERRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQPWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKRKRYDFRFKTHVVIQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFP 359          
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE)

HSP 1 Score: 486 bits (1250), Expect = 8.530e-159
Identity = 255/361 (70.64%), Postives = 286/361 (79.22%), Query Frame = 2
Query:   59 MSLSSPLSHALLKELRKLKDAKERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGAPSQHPPDAAAPAAKKRKF-DRGKKDRERAAHGTLGGNILNAFAIGSGKPIERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHSLISKWAKEEDENVRLAADDVMKNLMAKQQPKGTHP 1138
            MSLS+PLSH LLK+L KL + K+RGLILDRHFET+K HVK GNSVA  RWDAIE+   L+QT VF+EEEW+TQIDGE QGI SSTR S    QDAGGARGAPS HPP A A AA KRK  DR K+ R+RAA G LGGNI+NAFA GSGKPIERTRGGV E VSGI+FPPPAP  R  CPHCPMTFVNEQGLG HV TQHS ANM NGLRLQRMLG+ P G V PW +AGPGRCW VK+DGATGAASFVLQRK F  +DL+SDGF   D+K K TRGA +R RY FRFKAHV+ QLR+LQE A +L++ EQLTP QYLE  LKV++SLI KWA++E   V+ AADDV K L+AKQQPK   P
Sbjct:    1 MSLSNPLSHGLLKDLGKLSELKQRGLILDRHFETIKAHVKAGNSVAKERWDAIENAWGLKQTGVFNEEEWITQIDGEAQGITSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRWKQARDRAAQGVLGGNIINAFARGSGKPIERTRGGVTEHVSGINFPPPAPERRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQPWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFP 359          
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5KBV2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV2_9PHAE)

HSP 1 Score: 477 bits (1227), Expect = 3.060e-158
Identity = 252/368 (68.48%), Postives = 288/368 (78.26%), Query Frame = 2
Query:   41 LPCRGIMSLSSPLSHALLKELRKLKDAKERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGA--PSQHPPDAAAPAAKKRKFDRGKKDRERAAHGTLGGNILNAFAIGSGKPIERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHSLISKWAKEEDENVRLAADDVMKNLMAKQQPKGTHP 1138
            LP +GIMSLS+PLSH LLK+L KL + K RGLILDRHFET+K HVK GNSVA  RWDAIES   L+Q  +F E EW+ QIDGE+QGI SSTRLSL  QQDA  ARGA  PSQHPP AAA  A+ RK DRGK  RERA+ GTLG NI NAF+IGSG+PIERTRGGVKE VSGISFPPPAP SRR C HCPMT VNEQGLG HV TQHS+ANM NG+RL+RML ++  G VLPWE AGPGRCW VK+D ATGAASFVLQRK FL +DL+SDGF   D++ K TRGA +R RY +RFKA+ +NQLRIL++ A +LW+ E+ TP QYLE  LKVH+S I KWAK+E   V  AADDV K+L+AKQQ K   P
Sbjct:  220 LPHQGIMSLSNPLSHGLLKDLGKLAELKGRGLILDRHFETIKTHVKAGNSVAKERWDAIESAWGLKQNGIFDEGEWIAQIDGEIQGITSSTRLSLSSQQDASSARGAAAPSQHPPAAAADTAR-RKVDRGKHARERASKGTLGDNIWNAFSIGSGQPIERTRGGVKEFVSGISFPPPAPESRRSCLHCPMTIVNEQGLGIHVRTQHSSANMSNGVRLRRMLWKNLEGRVLPWEGAGPGRCWHVKVDDATGAASFVLQRKRFLDLDLESDGFM--DRETKETRGAPKRRRYDYRFKANAVNQLRILEDNAADLWKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQSKRWFP 584          
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5K1E6_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E6_9PHAE)

HSP 1 Score: 442 bits (1137), Expect = 1.140e-150
Identity = 229/317 (72.24%), Postives = 254/317 (80.13%), Query Frame = 2
Query:   59 MSLSSPLSHALLKELRKLKDAKERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGAPSQHPPDAAAPAAKKRKF-DRGKKDRERAAHGTLGGNILNAFAIGSGKPIERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYL 1006
            MSLS+PLSH LLK+L KL + K+RGLILDRHFET+K HVK GNSVA  RWDAIE+   L+QT VF+EEEW+TQIDGE QGI SSTR S    QDAGGARGAPS HPP A A AA KRK  DRGK+ R+RAA G L GNI+NAFA GSGKPIERTRGGV E VSGI+FPPPAP  R  CPHCPMTFVNEQGLG HV TQHS ANM NGLRLQRMLG+ P G V PW +AGPGRCW VK+DGATGAASFVLQRK F  +DL+SDGF   D+K K TRGA +R RY FRFKAHV+ QLR+LQE A +L++ EQLTP QYL
Sbjct:    1 MSLSNPLSHGLLKDLGKLSELKQRGLILDRHFETIKAHVKAGNSVAKQRWDAIENARGLKQTGVFNEEEWITQIDGEAQGITSSTRPSFLTSQDAGGARGAPSSHPPPATAAAAGKRKVADRGKQARDRAAQGVLSGNIINAFARGSGKPIERTRGGVTEHVSGINFPPPAPERRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQPWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYL 315          
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5JIJ5_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ5_9PHAE)

HSP 1 Score: 463 bits (1192), Expect = 4.490e-150
Identity = 243/362 (67.13%), Postives = 283/362 (78.18%), Query Frame = 2
Query:   59 MSLSSPLSHALLKELRKLKDAKERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGA--PSQHPPDAAAPAAKKRKFDRGKKDRERAAHGTLGGNILNAFAIGSGKPIERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHSLISKWAKEEDENVRLAADDVMKNLMAKQQPKGTHP 1138
            M LS+P SH LLK+L KL + K RGLILDRHFET+K HVK GNSVA  RWDAIES   L++  +F E +W+ QIDGE+QGI SSTRLSLP QQDA  ARGA  PSQHPP AAA  A+ RK +R K  RERAA GTLGG+I NAF+IGSG+PIERTRGGVKE VSGISFPPPAP SRR CPHCPMTF+NEQGLG HV TQHS+A M NG+RL+RML ++  G VLPWE+AGPGRCW VK+D ATGAASFVLQRK FL +DL+SDGF   D++ K  RGA +R RY +RFKA+ +NQLRIL++ A +L + E+ TP QYLE  LKVH+S I KWAK+E   V  AADDV K+L+AKQQPK   P
Sbjct:    1 MFLSNPSSHGLLKDLGKLAELKGRGLILDRHFETIKTHVKAGNSVAKERWDAIESAWGLKKNGIFDEGQWIAQIDGEIQGITSSTRLSLPSQQDASSARGAAAPSQHPPAAAAGTAR-RKVEREKHARERAAKGTLGGSICNAFSIGSGQPIERTRGGVKEFVSGISFPPPAPESRRSCPHCPMTFMNEQGLGIHVRTQHSSATMSNGVRLRRMLRKNLGGRVLPWEEAGPGRCWHVKVDDATGAASFVLQRKRFLDLDLESDGFM--DRETKEARGASKRRRYDYRFKANAVNQLRILEDNAADLCKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQPKRWFP 359          
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5LCI6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI6_9PHAE)

HSP 1 Score: 442 bits (1136), Expect = 5.240e-148
Identity = 241/364 (66.21%), Postives = 273/364 (75.00%), Query Frame = 2
Query:   59 MSLSSPLSHALLKELRKLKDAKERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGAPSQHPPDAAAPAAKKRKF-DRGKKDRERAAHGTLGGNILNAFAIGSGKPIE---RTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHSLISKWAKEEDENVRLAADDVMKNLMAKQQPKGTHP 1138
            MSLS+PLSH LLK+L KL + K+RGLILDRHFET+K HVK GNSVA  RWDAIE+   L+QT VF+EEEW+TQIDGE QGI SSTR S    QDAGGARGAPS HPP A A AA KRK  DRGK+ R+RAA G LGGNI+NAFA GSGKP +   RTR          +  P  P     CPHCPMTFVNEQGLG HV TQHS ANM N LRLQRMLG+ P G V PWE+AGPGRCW VK+DGATGAASFVLQRK F  +DL+SDGF   D+K K TRGA +R RY FRFKAHV+ QLR+LQE A +L++ EQLTP QYLE  LKV++SLI KWA++E   V+ AADDV K L+AKQQPK   P
Sbjct:    1 MSLSNPLSHGLLKDLGKLSELKQRGLILDRHFETIKAHVKAGNSVAKERWDAIENAWGLKQTGVFNEEEWITQIDGEAQGITSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRGKQARDRAAQGVLGGNIINAFARGSGKPTQWRKRTR----------TRAPSQPYFVIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNRLRLQRMLGKIPKGYVQPWEEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFP 352          
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5JKI6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI6_9PHAE)

HSP 1 Score: 423 bits (1087), Expect = 6.540e-141
Identity = 226/343 (65.89%), Postives = 251/343 (73.18%), Query Frame = 2
Query:  113 KDAKERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGAPSQHPPDAAAPAAKKRK-FDRGKKDRERAAHGTLGGNILNAFAIGSGKPIERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHSLISKWAKEEDENVRLAADDVMKNLMAKQQPKGTHP 1138
            ++ K+RGLILDRH ET+K HVK GNSVA  RWDAIES   L+Q  VF +EEWVTQIDGE QGI SSTRLS                           +RK  DRGK+ RERAA GTL GNI NAFAIGS  PIERTRGGVKEL+SGISFPPP P SRR CPHCPMTFVNEQGLG HV TQHS+ANM NG+RL+RML +D  GSVLPWE AGPGRCW VK D ATG ASFVLQRK FL +DLDSDGF   D+KPK TRGA +R RY FR KAH +NQLRILQ+ AE+LW+ EQ TP Q+LE  LK+ +S I KWAK E E V  AADDV K+L+AKQQPK   P
Sbjct:   30 RELKQRGLILDRHLETIKAHVKAGNSVAKKRWDAIESAWGLKQNGVFDDEEWVTQIDGETQGITSSTRLSSXXXXXXXXXXXXXXXXXXXXXXXGTARRKAVDRGKQARERAAKGTLDGNICNAFAIGSRGPIERTRGGVKELISGISFPPPTPESRRSCPHCPMTFVNEQGLGIHVRTQHSSANMSNGVRLRRMLRKDVGGSVLPWEAAGPGRCWHVKFDHATGTASFVLQRKRFLDLDLDSDGFM--DRKPKDTRGAPKRRRYDFRVKAHAVNQLRILQDNAEDLWKDEQRTPLQFLEDRLKIPYSNIVKWAKNEKELVAAAADDVKKSLLAKQQPKRWFP 370          
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5JNS2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS2_9PHAE)

HSP 1 Score: 415 bits (1067), Expect = 7.690e-140
Identity = 222/328 (67.68%), Postives = 254/328 (77.44%), Query Frame = 2
Query:   59 MSLSSPLSHALLKELRKLKDAKERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGA--PSQHPPDAAAPAAKKRKFDRGKKDRERAAHGTLGGNILNAFAIGSGKP-IERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHS 1033
            MSLS+PLSH LLK+L KL + K RGLILDRHFET+K HVK GNSVA  RWDAIES   L+Q  +F E EW+ QIDGE+QGI SSTRLSL  QQDA  ARGA  PSQHP  AAA  A+ RK DRGK  RERAA GTLGG I NAF+IGSG+P IERTRGGVKE VSGISFPPPAP SR  CP+CPMTFVNEQGLG HV TQHS+ANM NG+RL+RML ++  G VLPWE+AGPGRCW VK+D AT AASFVLQRK FL +DL+SDG    D++ K TRGA +R RY +RFKA+ +NQLRIL++   + W  E+ T  QYL   LKVH+S
Sbjct:    1 MSLSNPLSHGLLKDLGKLAELKGRGLILDRHFETIKTHVKAGNSVAKERWDAIESAWGLKQNGIFDEGEWIPQIDGEIQGITSSTRLSLSSQQDASSARGAAAPSQHPSAAAAGTAR-RKVDRGKHARERAAKGTLGGIICNAFSIGSGQPQIERTRGGVKEFVSGISFPPPAPESRPSCPYCPMTFVNEQGLGIHVRTQHSSANMSNGVRLRRMLRKNLAGRVLPWEEAGPGRCWHVKVDDATRAASFVLQRKRFLDLDLESDGLM--DRETKETRGAPKRRRYDYRFKANAVNQLRILEDNTADFWMEEERTRLQYLGDRLKVHYS 325          
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Match: A0A6H5K740_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K740_9PHAE)

HSP 1 Score: 434 bits (1116), Expect = 1.250e-139
Identity = 234/361 (64.82%), Postives = 261/361 (72.30%), Query Frame = 2
Query:   59 MSLSSPLSHALLKELRKLKDAKERGLILDRHFETVKEHVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRLSLPPQQDAGGARGAPSQHPPDAAAPAAKKRK-FDRGKKDRERAAHGTLGGNILNAFAIGSGKPIERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNEQGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKIDGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFKAHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHSLISKWAKEEDENVRLAADDVMKNLMAKQQPKGTHP 1138
            MS  +PLSH +LKEL KL + K+RGLILDRHFET+K HVK GNSVA  RWDAIES   L++  VF EEEWVTQIDGE QGI SSTRLS                           +RK  DRGK+ RERAA GTLGGNI NAFAIGS  PIERTRGGVKEL+SGISFPPP P SRR CPHCPMTFVNEQGLG HV TQHS+ANM NG+RL+RML +D  GSVLPWE AGPG  W VK D ATG  S VLQRK FL +DLDSDGF   D+KPK TRGA +R RY FRF A+ +NQLRILQ+ AE LW+ E+ TP Q+LE  LK+ +S I KWAK E E V  AADDV K+L+AKQQPK   P
Sbjct:    1 MSQCNPLSHGILKELGKLAELKQRGLILDRHFETIKAHVKAGNSVAKERWDAIESAWGLKKNGVFDEEEWVTQIDGETQGITSSTRLSSXXXXXXXXXXXXXXXXXXXXXXXGTARRKAVDRGKQARERAAKGTLGGNICNAFAIGSRGPIERTRGGVKELISGISFPPPTPESRRSCPHCPMTFVNEQGLGIHVRTQHSSANMSNGVRLRRMLRKDVGGSVLPWEAAGPGHYWHVKFDHATGTTSLVLQRKRFLDLDLDSDGFM--DRKPKDTRGAPKRRRYDFRFNAYAVNQLRILQDNAEHLWKEEKGTPLQFLEDRLKIPYSNIVKWAKNEKELVAAAADDVTKSLLAKQQPKRWFP 359          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.23.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6P0_9PHAE1.240e-15968.77C2H2-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K4R4_9PHAE6.970e-15970.64C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFX9_9PHAE8.530e-15970.64C2H2-type domain-containing protein n=15 Tax=Ectoc... [more]
A0A6H5KBV2_9PHAE3.060e-15868.48C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K1E6_9PHAE1.140e-15072.24C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JIJ5_9PHAE4.490e-15067.13C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LCI6_9PHAE5.240e-14866.21C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKI6_9PHAE6.540e-14165.89C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNS2_9PHAE7.690e-14067.68C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K740_9PHAE1.250e-13964.82C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:45216..48205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0Q3
PFAMsDDE_1
Model size1540
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.14e-160
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size1122
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.23.2prot_P-littoralis_Contig145.23.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 45235..47479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789681.2230327-UTR-P-littoralis_Contig145:45215..452341680789681.2230327-UTR-P-littoralis_Contig145:45215..45234Pylaiella littoralis U1_48UTRP-littoralis_Contig145 45216..45234 +
1680789681.2637415-UTR-P-littoralis_Contig145:47479..475021680789681.2637415-UTR-P-littoralis_Contig145:47479..47502Pylaiella littoralis U1_48UTRP-littoralis_Contig145 47480..47502 +
1680789681.2755072-UTR-P-littoralis_Contig145:47829..482051680789681.2755072-UTR-P-littoralis_Contig145:47829..48205Pylaiella littoralis U1_48UTRP-littoralis_Contig145 47830..48205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789681.23381-CDS-P-littoralis_Contig145:45234..452501680789681.23381-CDS-P-littoralis_Contig145:45234..45250Pylaiella littoralis U1_48CDSP-littoralis_Contig145 45235..45250 +
1680789681.2425747-CDS-P-littoralis_Contig145:45737..462071680789681.2425747-CDS-P-littoralis_Contig145:45737..46207Pylaiella littoralis U1_48CDSP-littoralis_Contig145 45738..46207 +
1680789681.2532098-CDS-P-littoralis_Contig145:46843..474791680789681.2532098-CDS-P-littoralis_Contig145:46843..47479Pylaiella littoralis U1_48CDSP-littoralis_Contig145 46844..47479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.23.2

>prot_P-littoralis_Contig145.23.2 ID=prot_P-littoralis_Contig145.23.2|Name=mRNA_P-littoralis_Contig145.23.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=374bp
MATPEVCLPCRGIMSLSSPLSHALLKELRKLKDAKERGLILDRHFETVKE
HVKVGNSVATGRWDAIESGLELRQTDVFSEEEWVTQIDGEVQGIASSTRL
SLPPQQDAGGARGAPSQHPPDAAAPAAKKRKFDRGKKDRERAAHGTLGGN
ILNAFAIGSGKPIERTRGGVKELVSGISFPPPAPGSRRQCPHCPMTFVNE
QGLGTHVSTQHSTANMYNGLRLQRMLGQDPNGSVLPWEQAGPGRCWRVKI
DGATGAASFVLQRKSFLHMDLDSDGFAKEDQKPKATRGAKQRNRYSFRFK
AHVINQLRILQEKAEELWRAEQLTPAQYLEYTLKVHHSLISKWAKEEDEN
VRLAADDVMKNLMAKQQPKGTHP*
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mRNA from alignment at P-littoralis_Contig145:45216..48205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.23.2 ID=mRNA_P-littoralis_Contig145.23.2|Name=mRNA_P-littoralis_Contig145.23.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2990bp|location=Sequence derived from alignment at P-littoralis_Contig145:45216..48205+ (Pylaiella littoralis U1_48)
CGTCTGTCCCGGCGGAAGCATGGCAACTCCTGAAGGTGAGGTTGTTACTT CGGTACTCAGACAAGTCCTCAGTGAAGGTTTGGCTGGCTGTGGTGCCCTG TGGCTCGAGAACGGGTAGCCACATATTTGTCATGCCGACCAGCTAAGTTA GAACACAGCAGTCTGGCAGCTAAGGCTGGGTCTTAAGAAATTGGCAGCTA AGAAATTGAGGCTAAAAAAATCAAAGTTTAGGAACTTGCCCATAAGAACA TGTGCTCAGTTTGACGTGCTGATAAGAATAAGAACCCAAACATAAGGTGT ACCTTTGCTGCTACAGATAAGAACATGAGTCAACGCGGCTGTAACGTAAG AACATGCTGGTTGACCCCACCAGGATTCCAGGCCTTGGATTCTCCAGGGG GGGGGGGTGGGTATATGTATCCAAATATTCTTTCCTGAGGGAGGGGGGTC CGCTCGTACAAAATACACGCAATCGTGCCCCCGCCGCGCGGCTGCTTGCT TTTTTGTGCGGCGTGCCACGAGTTTGCCTGCCGTGCAGGGGAATCATGTC CCTATCCAGTCCTTTATCCCATGCGTTGTTGAAGGAGCTGCGAAAACTTA AGGATGCTAAAGAACGGGGTCTTATTCTTGACCGTCACTTTGAGACGGTA AAAGAACATGTCAAGGTGGGAAACTCGGTTGCCACGGGACGATGGGACGC CATCGAGAGTGGGTTGGAGCTAAGGCAGACGGATGTTTTCTCAGAAGAAG AGTGGGTTACGCAGATTGATGGAGAAGTCCAGGGTATTGCCAGCAGCACC CGCCTGTCATTGCCACCGCAGCAAGATGCCGGCGGCGCACGAGGCGCACC GTCTCAGCATCCACCTGATGCTGCTGCACCGGCTGCCAAGAAGAGAAAAT TCGACCGAGGGAAGAAAGACAGGGAGAGAGCTGCCCACGGTACTCTCGGC GGCAACATCCTGAACGCGTTCGCTATTGGCAGCGGAAAACCGGTGAGTTC TACTTGTTTGTGTACATCAGGGAAGTATTTTTTGGTGTACATGTAGTTCT AGACGTACAGCAGTACATAAATCTAACCTGTCCATAAATCATGCTAGAAA AAACAACACCCCCCCCAAGGTGTGTTGTGTTTTCCTCCCATTTATACTGG CGACAGTCCCCCCAATGAACGAGAGAAAACTTTCACCAGGTTGGGTGTAT TAACGACTGACTTTTAGCAGATGCTACTATACTTCGAAGTATGTTGACAA CTTTTTCAAACACCCTCAGTTTGCACGATTTTTGAGGGAGGCAAAAGATG GTACAGCAGTGCACAAAGCGTCGTTCGAACCATTTCTGTGATAGCATGCG GACACACACACACGCCTGTAAAATATTTGTTTTTCAGCACTGTGATACAA AGAGAGGCCGTCGTCTCTTTATCTCTTTCGCGTGGTTCTGCTCTCTTATT TTTGTTTCCATATGCATAGACATCTTTCGCTATCTCGGACGTACGCGGGG GTCCAGTGCTCTTCGACGGTCTGCACCACGAGCTTTCGGAGCGTAATCGA CATCCACGCAATTTCGAGGTCCACAGCTCGTTGAATCACTGCATCTCAAT GCCGCCCTTCTCCCACGACGCCGTGCAGATTGAGCGGACTCGCGGTGGTG TCAAAGAGCTTGTATCCGGTATCAGCTTCCCACCTCCGGCCCCGGGCTCC CGCCGACAGTGCCCCCACTGTCCCATGACCTTCGTGAACGAGCAAGGACT TGGGACCCACGTGAGCACGCAGCACAGCACTGCAAACATGTACAACGGCT TACGGCTGCAGCGAATGCTAGGGCAGGATCCCAACGGGAGTGTCCTACCG TGGGAACAAGCCGGACCTGGGCGGTGTTGGCGCGTGAAGATCGATGGCGC GACGGGGGCGGCTTCGTTCGTCCTCCAGCGGAAGAGCTTTCTCCACATGG ACTTGGATAGCGACGGCTTCGCGAAAGAGGACCAAAAGCCGAAAGCCACT CGCGGAGCTAAACAGCGCAATCGATACAGCTTCAGGTTCAAAGCCCATGT TATCAACCAGCTGCGCATCCTTCAGGAAAAAGCCGAAGAACTCTGGAGGG CGGAGCAGCTGACGCCTGCTCAGTACTTGGAGTACACTCTCAAGGTTCAC CACAGCCTCATCAGCAAGTGGGCTAAGGAGGAGGACGAGAACGTGCGTCT TGCAGCAGATGACGTGATGAAGAACCTCATGGCAAAACAGCAGCCTAAGG GTACGCACCCCTAACGTCACCCTCGTGGACCAAGAAGGTTGAGGTGGCTG AATACCAGATTTTTTGTTTTGTGCTCGTTGGCACTGTATGTACTATAATG AACGCTAAAAACAGATGCCTTCAATAATAAAAAACAATCGAAATTGGCGC TGGCATGAAATCATGGATACAAAATACGGCAGTCAGTAGAACTTGAAAAC ATCGCTCGGGTGTCCTTGGGGTCTCATCGCTCCAATAGCCTGTCGGACAT CATTTTAGGTTGATGATAATTGTTTCTTCGGCTACTGAATATACTGTACG CTCAGTGTACAACCACCCCCCCCCCCCGCCTGCCCCCGCGTCCCCGAAAC GCATGACCTGACAGGGCGTGCTGGATCGCCAAAAGGAGAGGGAGGGAAAC GGCGACACCGTGTCGTATGTCCTTGCTCGCACGATCCGCAGCAATTTGCA GTACGAGGCGGCGAAATTGATCGGGTGTACGGGCATGGGAAACCAGTGCT TGTTATACTGTATTGACAGCAGCAGTATATTTTCAAAAACGTTCCAACAC TCCGGCGAATCTAGGTAGCGGAGTTTCCCGAAAGTGTGCGTCGTTACAAG TTGGTCGTCACACGAAGTATGGGCACTATGGAGCAATCAATGTTGAAATA GAAGAAGAACGTAAGGTTTCTGGAGACAGTGGGACGACGAAATAAGAACT TGGCCAAATGGGACGACGAAATAAGAACATGGCAAATAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig145:45216..48205+

>mRNA_P-littoralis_Contig145.23.2 ID=mRNA_P-littoralis_Contig145.23.2|Name=mRNA_P-littoralis_Contig145.23.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1122bp|location=Sequence derived from alignment at P-littoralis_Contig145:45216..48205+ (Pylaiella littoralis U1_48)
ATGGCAACTCCTGAAGTTTGCCTGCCGTGCAGGGGAATCATGTCCCTATC
CAGTCCTTTATCCCATGCGTTGTTGAAGGAGCTGCGAAAACTTAAGGATG
CTAAAGAACGGGGTCTTATTCTTGACCGTCACTTTGAGACGGTAAAAGAA
CATGTCAAGGTGGGAAACTCGGTTGCCACGGGACGATGGGACGCCATCGA
GAGTGGGTTGGAGCTAAGGCAGACGGATGTTTTCTCAGAAGAAGAGTGGG
TTACGCAGATTGATGGAGAAGTCCAGGGTATTGCCAGCAGCACCCGCCTG
TCATTGCCACCGCAGCAAGATGCCGGCGGCGCACGAGGCGCACCGTCTCA
GCATCCACCTGATGCTGCTGCACCGGCTGCCAAGAAGAGAAAATTCGACC
GAGGGAAGAAAGACAGGGAGAGAGCTGCCCACGGTACTCTCGGCGGCAAC
ATCCTGAACGCGTTCGCTATTGGCAGCGGAAAACCGATTGAGCGGACTCG
CGGTGGTGTCAAAGAGCTTGTATCCGGTATCAGCTTCCCACCTCCGGCCC
CGGGCTCCCGCCGACAGTGCCCCCACTGTCCCATGACCTTCGTGAACGAG
CAAGGACTTGGGACCCACGTGAGCACGCAGCACAGCACTGCAAACATGTA
CAACGGCTTACGGCTGCAGCGAATGCTAGGGCAGGATCCCAACGGGAGTG
TCCTACCGTGGGAACAAGCCGGACCTGGGCGGTGTTGGCGCGTGAAGATC
GATGGCGCGACGGGGGCGGCTTCGTTCGTCCTCCAGCGGAAGAGCTTTCT
CCACATGGACTTGGATAGCGACGGCTTCGCGAAAGAGGACCAAAAGCCGA
AAGCCACTCGCGGAGCTAAACAGCGCAATCGATACAGCTTCAGGTTCAAA
GCCCATGTTATCAACCAGCTGCGCATCCTTCAGGAAAAAGCCGAAGAACT
CTGGAGGGCGGAGCAGCTGACGCCTGCTCAGTACTTGGAGTACACTCTCA
AGGTTCACCACAGCCTCATCAGCAAGTGGGCTAAGGAGGAGGACGAGAAC
GTGCGTCTTGCAGCAGATGACGTGATGAAGAACCTCATGGCAAAACAGCA
GCCTAAGGGTACGCACCCCTAA
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