mRNA_P-littoralis_Contig1442.5.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI) HSP 1 Score: 103 bits (257), Expect = 1.700e-23 Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGV-LDRSEWLSITETEIMVVPGDGVPSSPAPTTSGTPAP 264
LA Y+GD R+RTV V+VDGDLVTTWTSSGTT FES+DMS +GQV+T+TG L SEWLSI ETEIMV +GV P+PTT TP+P
Sbjct: 253 LAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVETEIMVY--NGVAPPPSPTTPATPSP 339
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 103 bits (257), Expect = 2.020e-23 Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 1
Query: 1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWLSITETEIMVVPGDGVPSSPAPTTSGTPAPV 267
LA Y+G R+RTVDV+VDG L TTWTSSGTT FE++D+S SGQ +TVTGVLD SEW+SITET+IMV+ D V S P+P+T+ TPAPV
Sbjct: 259 LALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLDDSEWVSITETDIMVL-SDSVVSPPSPSTT-TPAPV 345
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 4.510e-22 Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 1
Query: 1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWLSITETEIMVVPGDGV---PSSPAPTTSGTPAPVST 273
LA Y G R+RTVDVSVDG L TTWTSSGTT FE+ID+S SGQ ITVTGVLD EWLSI ETEIMV+ DGV PS+ +PT + APV+T
Sbjct: 257 LALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTGVLDNLEWLSIKETEIMVL-SDGVVFPPSASSPTPAPVFAPVAT 349
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 5.360e-21 Identity = 65/116 (56.03%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSE-ISGQVITVTGVLDRSEWLSITETEIMVVPGDGV--PSSPAPTTSGTPAPVSTAPPASEPAGVLRTVGLTPLARG 339
+A Y GD R+RT+DVSVDG LV TWTSSGTT FESI + +SG VI + GVLD SEWLSI ETEIMV P + V P +PA T +T P P G L+ VGL PLA G
Sbjct: 319 VALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLDDSEWLSIIETEIMVWPQNVVTPPPTPATTAXXXXXQPATTSPIPTPVGDLQPVGLIPLATG 434
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 4.380e-20 Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDR-SEWLSITETEIMVVPGDGVPSSPAPTTSG------TPAPVS 270
L YRGD R RTVDVSVDG LVTTWTSSGTT +FES+D+S GQV+T++G S+WLSI ETEIMV GD +P+PTT TP+PVS
Sbjct: 256 LRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIETEIMVYEGDAP--APSPTTPPPVVMPMTPSPVS 350
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 5.660e-14 Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWLSITETEIMVVPGD 216
+A Y+GDER RT+D+S+D TTWTSSGTT +E+I++ ++ Q I+V GVL+ SEWLSI E EIM+ G+
Sbjct: 103 IAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELDTMA-QWISVVGVLEDSEWLSIMEVEIMIEDGE 173
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.260e-12 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWLSITETEIMVVPGD 216
+A Y+GDER RT+++S+D TTWTSSGTT FE+I++ + G+ I++ GVL SEWLSI E +IM+ G+
Sbjct: 85 IAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTM-GRWISIVGVLADSEWLSIMEVKIMIDDGE 155 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1442.5.1 >prot_P-littoralis_Contig1442.5.1 ID=prot_P-littoralis_Contig1442.5.1|Name=mRNA_P-littoralis_Contig1442.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp MRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWLback to top mRNA from alignment at P-littoralis_Contig1442:16701..17480- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1442.5.1 ID=mRNA_P-littoralis_Contig1442.5.1|Name=mRNA_P-littoralis_Contig1442.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig1442:16701..17480- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1442:16701..17480- >mRNA_P-littoralis_Contig1442.5.1 ID=mRNA_P-littoralis_Contig1442.5.1|Name=mRNA_P-littoralis_Contig1442.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig1442:16701..17480- (Pylaiella littoralis U1_48)back to top |