mRNA_P-littoralis_Contig1442.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1442.5.1
Unique NamemRNA_P-littoralis_Contig1442.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.700e-23
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGV-LDRSEWLSITETEIMVVPGDGVPSSPAPTTSGTPAP 264
            LA Y+GD R+RTV V+VDGDLVTTWTSSGTT  FES+DMS  +GQV+T+TG  L  SEWLSI ETEIMV   +GV   P+PTT  TP+P
Sbjct:  253 LAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVETEIMVY--NGVAPPPSPTTPATPSP 339          
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.020e-23
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWLSITETEIMVVPGDGVPSSPAPTTSGTPAPV 267
            LA Y+G  R+RTVDV+VDG L TTWTSSGTT  FE++D+S  SGQ +TVTGVLD SEW+SITET+IMV+  D V S P+P+T+ TPAPV
Sbjct:  259 LALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLDDSEWVSITETDIMVL-SDSVVSPPSPSTT-TPAPV 345          
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.510e-22
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWLSITETEIMVVPGDGV---PSSPAPTTSGTPAPVST 273
            LA Y G  R+RTVDVSVDG L TTWTSSGTT  FE+ID+S  SGQ ITVTGVLD  EWLSI ETEIMV+  DGV   PS+ +PT +   APV+T
Sbjct:  257 LALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTGVLDNLEWLSIKETEIMVL-SDGVVFPPSASSPTPAPVFAPVAT 349          
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 5.360e-21
Identity = 65/116 (56.03%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSE-ISGQVITVTGVLDRSEWLSITETEIMVVPGDGV--PSSPAPTTSGTPAPVSTAPPASEPAGVLRTVGLTPLARG 339
            +A Y GD R+RT+DVSVDG LV TWTSSGTT  FESI   + +SG VI + GVLD SEWLSI ETEIMV P + V  P +PA T        +T  P   P G L+ VGL PLA G
Sbjct:  319 VALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLDDSEWLSIIETEIMVWPQNVVTPPPTPATTAXXXXXQPATTSPIPTPVGDLQPVGLIPLATG 434          
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.380e-20
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDR-SEWLSITETEIMVVPGDGVPSSPAPTTSG------TPAPVS 270
            L  YRGD R RTVDVSVDG LVTTWTSSGTT +FES+D+S   GQV+T++G     S+WLSI ETEIMV  GD    +P+PTT        TP+PVS
Sbjct:  256 LRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIETEIMVYEGDAP--APSPTTPPPVVMPMTPSPVS 350          
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.660e-14
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWLSITETEIMVVPGD 216
            +A Y+GDER RT+D+S+D    TTWTSSGTT  +E+I++  ++ Q I+V GVL+ SEWLSI E EIM+  G+
Sbjct:  103 IAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELDTMA-QWISVVGVLEDSEWLSIMEVEIMIEDGE 173          
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.260e-12
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 LATYRGDERMRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWLSITETEIMVVPGD 216
            +A Y+GDER RT+++S+D    TTWTSSGTT  FE+I++  + G+ I++ GVL  SEWLSI E +IM+  G+
Sbjct:   85 IAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTM-GRWISIVGVLADSEWLSIMEVKIMIDDGE 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1442.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FL48_ECTSI1.700e-2366.29Leucine rich repeat carbohydrate binding protein n... [more]
A0A6H5KL74_9PHAE2.020e-2366.29F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5KFA6_9PHAE4.510e-2265.96F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FZZ4_ECTSI5.360e-2156.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1V3_9PHAE4.380e-2059.79F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FTH1_ECTSI5.660e-1454.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE1.260e-1251.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1442contigP-littoralis_Contig1442:16701..17480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FL48
PFAMsLRR_8
Model size341
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.54e-20
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size312
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.2135165-CDS-P-littoralis_Contig1442:16700..168501680789680.2135165-CDS-P-littoralis_Contig1442:16700..16850Pylaiella littoralis U1_48CDSP-littoralis_Contig1442 16701..16850 -
1680789680.2256067-CDS-P-littoralis_Contig1442:17291..174531680789680.2256067-CDS-P-littoralis_Contig1442:17291..17453Pylaiella littoralis U1_48CDSP-littoralis_Contig1442 17292..17453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.2346864-UTR-P-littoralis_Contig1442:17453..174801680789680.2346864-UTR-P-littoralis_Contig1442:17453..17480Pylaiella littoralis U1_48UTRP-littoralis_Contig1442 17454..17480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1442.5.1prot_P-littoralis_Contig1442.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1442 16701..17453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1442.5.1

>prot_P-littoralis_Contig1442.5.1 ID=prot_P-littoralis_Contig1442.5.1|Name=mRNA_P-littoralis_Contig1442.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MRTVDVSVDGDLVTTWTSSGTTLDFESIDMSEISGQVITVTGVLDRSEWL
SITETEIMVVPGDGVPSSPAPTTSGTPAPVSTAPPASEPAGVLRTVGLTP
LARG
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mRNA from alignment at P-littoralis_Contig1442:16701..17480-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1442.5.1 ID=mRNA_P-littoralis_Contig1442.5.1|Name=mRNA_P-littoralis_Contig1442.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig1442:16701..17480- (Pylaiella littoralis U1_48)
TTAGCTACGTACAGGGGTGATGAGAGGATGAGGACCGTTGATGTCTCCGT CGACGGTGATCTTGTCACCACCTGGACCAGCTCGGGCACTACCCTTGACT TCGAGAGCATCGACATGTCAGAAATCTCTGGACAAGTGATCACCGTGACA GGCGTTCTGGATAGGTCGGAGTGGCTCAGCATCACAGAGGTCAGTTCCTA CACTTGAATGTGCACGGTCCCGTCGGGTGTTGGTTTCTGACGGTGCAACG TGTATGCTGCGCTCGGCACCGGTGGTGTACTCGTGCTATTGATGTCTTGT GACGTTGATGTGGAGCAGTGCTTAAAAGTGCACCGAACTGCGTTACACCC CGACACGTCGATCACTGCCCTCACAACACATCACCTTTTTTCCGAGATCG GACTTGAGCGGAGGCTATTTCCAGCTTGAACGTGTTGGGTTCAAATCGTG TGCGATCATGTGAAATACGACTTTTCCGGCACCATCGAGGTCTTCTCATT GCCCTGTGCCCTGTGACCTGTCGCCCTTTCACAGGCCATTTTACGACGAG ACCACAACGAAGACAAGGAAGCATCGTTTATATCTGTTTCCTCCTGCTCC TCCACATTTTGTTTTCGTGCTTCTGAGCAGACGGAGATTATGGTTGTGCC AGGCGACGGGGTTCCATCTTCGCCCGCCCCTACCACCTCCGGAACTCCTG CTCCCGTTTCCACCGCACCGCCTGCTTCTGAACCTGCTGGCGTTCTGCGA ACTGTGGGCCTTACCCCCTTGGCAAGAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1442:16701..17480-

>mRNA_P-littoralis_Contig1442.5.1 ID=mRNA_P-littoralis_Contig1442.5.1|Name=mRNA_P-littoralis_Contig1442.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig1442:16701..17480- (Pylaiella littoralis U1_48)
ATGAGGACCGTTGATGTCTCCGTCGACGGTGATCTTGTCACCACCTGGAC
CAGCTCGGGCACTACCCTTGACTTCGAGAGCATCGACATGTCAGAAATCT
CTGGACAAGTGATCACCGTGACAGGCGTTCTGGATAGGTCGGAGTGGCTC
AGCATCACAGAGACGGAGATTATGGTTGTGCCAGGCGACGGGGTTCCATC
TTCGCCCGCCCCTACCACCTCCGGAACTCCTGCTCCCGTTTCCACCGCAC
CGCCTGCTTCTGAACCTGCTGGCGTTCTGCGAACTGTGGGCCTTACCCCC
TTGGCAAGAGGG
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