mRNA_P-littoralis_Contig144.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.78.1
Unique NamemRNA_P-littoralis_Contig144.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 6.060e-106
Identity = 184/415 (44.34%), Postives = 249/415 (60.00%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYE--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAHG-IGLEPLQLPVIPTG 1074
            M KLL   P   GGMP+  +PE+    + +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E                               +F  L NMDQTP+Q E+P +TT+EKTGAK A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF   T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++ +  T+++CF +CGLTL LDGSEDHAWC + FG++YR++L EQR  W   H  + L PL+LP +P G
Sbjct:    1 MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQRAVWLAEHADVTLPPLKLPKVPGG 413          
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 1.010e-97
Identity = 182/440 (41.36%), Postives = 238/440 (54.09%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGET-------------------------EKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI-RDNYERSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 1071
            VM KLL   P   GG+ ++ +PE+    + +F +WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EKTGAK A I TG                            EK R+T+ LAV  DG KV  RII+KG PFV                           +  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+   +   +    K+  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L PLQLP +P 
Sbjct:   87 VMNKLLELKPDTLGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA 525          
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 6.280e-94
Identity = 173/420 (41.19%), Postives = 234/420 (55.71%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYE--RSGQKVTAPSRGLVATWVKEVWDNISERTIRS-----------------------------CFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQ 1005
            M KLL   P   GGM +  +P +    + + N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  L NMDQTP+Q EMP +TT+EKTGAK A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF+                               +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+ S                             CFK+CGLTL LDGSEDHAWC + FG++YR++L EQ
Sbjct:    1 MNKLLELKPNALGGMSANAKPTEALAFKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESITPETVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQ 418          
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 7.850e-93
Identity = 180/418 (43.06%), Postives = 234/418 (55.98%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNY-ERSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEW-EQAHGIGLEPLQLPVIPTGDG 1080
            VM KLL   P   GG+ +    E+    + +F  WY+RF +RH  SIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK GAK A I+TGG+ EK R+T+ LAV  DG KV  RII+KG PF+                            NFGYP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR +              T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++     +    K+  P RGLV+TW KE W  I+  T++ CFKVCGLTL LDGSED AWC + FG+ YREVL +QR EW  Q  G+ L PLQLP + +  G
Sbjct:  173 VMNKLLELKPDALGGLTAAASAEETLAFRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGK-EKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYMASAIADPKTGKLQPPGRGLVSTWCKESWAAITAETVKMCFKVCGLTLALDGSEDDAWCTHNFGEGYREVLVQQRAEWGAQRPGVTLPPLQLPEVSSASG 574          
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 9.960e-93
Identity = 183/431 (42.46%), Postives = 242/431 (56.15%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV---------------------------------GGTNNFGYPA----GGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYT----SWIRDNYERSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAHGIG-LEPLQLPVIPTG 1074
            VM KLL   P   GGM +  +PE+    + +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+EKTGAK A I+TGGE EK R+T+VLAV  DG+KV PRII+KG PF+                                 GG  N   P     G   +   + SW D  + + W+   +  RP + S   QRP +LVLDDF+CH++E F   L   AKT V+ + GGLT + QPLDR +NK+ KR +R +YT    S + D   RSG K+  P  G+V+TW KE W++I+ +T+ +CFK+CGLTL LDGSE HAWC + FG++Y ++L EQ   W   H    L PL+LP +P G
Sbjct:  182 VMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVAD--ARSG-KLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSEHHAWCEHNFGEDYGDLLEEQHAVWLAEHPDDTLPPLKLPKVPGG 607          
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 1.080e-88
Identity = 166/378 (43.92%), Postives = 225/378 (59.52%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYE--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCI 963
            VM KLL   P   GGMP+  +PE+    + +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTGAK A I+TGG  EK R+T+VLAV  DG+KV PRII++G PF+  T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+++C K+CGLTL LDGSEDHA CI
Sbjct:  194 VMNKLLELKPDALGGMPANAKPEEAIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERGVVSTWCKEAWESITPETVKTCSKICGLTLALDGSEDHA-CI 569          
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 1.470e-86
Identity = 174/425 (40.94%), Postives = 233/425 (54.82%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYE--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAW--CIYTFGDNYREVLREQREEWEQAHGIGLEPLQLPVIPTG 1074
            VM KLL   P   GGMP+  +PE+    + +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I+TGG+ EK R+T+VLAV  DG+ V P II+KG PF+  T +                         G+PA G+S GVQ+ SW    + + W+   +        M RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W+ ++  T+ +CFK+CGLTL LDGSEDHA   CI    D                  + L PL+LP +P G
Sbjct:  154 VMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERGVVSTWCKEAWEFVTSETVNTCFKICGLTLALDGSEDHACTPCIAEHPD------------------VTLPPLKLPKVPEG 558          
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.780e-83
Identity = 182/518 (35.14%), Postives = 241/518 (46.53%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS------------------------WIRDNY---------------------------------------------------------------------------------ERSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 1071
            M KLL   P   GG+ ++ +PE+   +  +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+E TGAK A I TGG+ EK R+T+ LAV  DG+KV  RII+KG PFV                           +  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGL P+ QPLDR +NK+ KR +R  YT+                        W ++ +                                                                                 +    K+  P RG VATW K  W +I+   +++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L PLQLP +P 
Sbjct:  155 MNKLLELKPDALGGLAAKPKPEEALALNSKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKPGKLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA 670          
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 4.600e-83
Identity = 139/313 (44.41%), Postives = 195/313 (62.30%), Query Frame = 1
Query:  208 QKLRSSLREHAQEAIFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYERSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIP 1068
            + L S      +  +F  L NMDQTP+Q EMP +TT+EKTGAK A ++TGGE EK R+T+VLAV  DG+KV  RII+ G PF+  T +                         G+PA G+S GVQ+ SW D  + + W +  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R++YT++     +    K+  P RG+V+TW K  W++I+  T+++CFK+CGLTL LDGSEDHAWC + FG++YR++L EQ   W   H  + L PL+LP +P
Sbjct:   33 EDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGE-EKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASATDARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVP 344          
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 1.980e-82
Identity = 167/415 (40.24%), Postives = 220/415 (53.01%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGAKSACITTG-GETEK--------------LRYTVVLAVRGDGQKVRPRIIYKGNP---------FVGGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS-WIRDNYERSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 1071
            VM KLL   P   GG+ ++ +PE+    + +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EK GAK A I TG GE  +               R      VR   +  RP                 F     + G P      GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+   +   +     +  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L  LQLP +P 
Sbjct:  149 VMNKLLELKPDALGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLEKAGAKDARIATGAGEKRRNASRSAWLPRRMARSRLASSSRVRLSFRLPRPGXXXXXXXXXXXXXXXYFPRTAPSTGSPWEACPSGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDPKTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPTLQLPKVPA 562          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6L9_9PHAE6.060e-10644.34DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE1.010e-9741.36DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE6.280e-9441.19DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE7.850e-9343.06DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE9.960e-9342.46DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE1.080e-8843.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE1.470e-8640.94DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.780e-8335.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KII4_9PHAE4.600e-8344.41DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE1.980e-8240.24DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:217972..219749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size1084
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.32e-46
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size1080
COG categoryCH
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.26791-CDS-P-littoralis_Contig144:217971..2185841680789678.26791-CDS-P-littoralis_Contig144:217971..218584Pylaiella littoralis U1_48CDSP-littoralis_Contig144 217972..218584 -
1680789678.2804012-CDS-P-littoralis_Contig144:218653..2187571680789678.2804012-CDS-P-littoralis_Contig144:218653..218757Pylaiella littoralis U1_48CDSP-littoralis_Contig144 218654..218757 -
1680789678.29117-CDS-P-littoralis_Contig144:219278..2193951680789678.29117-CDS-P-littoralis_Contig144:219278..219395Pylaiella littoralis U1_48CDSP-littoralis_Contig144 219279..219395 -
1680789678.3023362-CDS-P-littoralis_Contig144:219500..2197461680789678.3023362-CDS-P-littoralis_Contig144:219500..219746Pylaiella littoralis U1_48CDSP-littoralis_Contig144 219501..219746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.3288875-UTR-P-littoralis_Contig144:219746..2197491680789678.3288875-UTR-P-littoralis_Contig144:219746..219749Pylaiella littoralis U1_48UTRP-littoralis_Contig144 219747..219749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.78.1prot_P-littoralis_Contig144.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 217972..219746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.78.1

>prot_P-littoralis_Contig144.78.1 ID=prot_P-littoralis_Contig144.78.1|Name=mRNA_P-littoralis_Contig144.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=360bp
MAKLLSEMPTFSGGMPSQDEPEKMEKIQKRFNAWYYRFLKRHRFSIRRKT
SVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALLYNMDQTPIQAEMP
PDTTVEKTGAKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF
VGGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSRDQRP
SVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEF
KRGVRARYTSWIRDNYERSGQKVTAPSRGLVATWVKEVWDNISERTIRSC
FKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAHGIGLEPLQ
LPVIPTGDGV
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mRNA from alignment at P-littoralis_Contig144:217972..219749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.78.1 ID=mRNA_P-littoralis_Contig144.78.1|Name=mRNA_P-littoralis_Contig144.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1778bp|location=Sequence derived from alignment at P-littoralis_Contig144:217972..219749- (Pylaiella littoralis U1_48)
GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC GTCCCAAGACGAGCCGGAGAAGATGGAAAAAATTCAGAAGCGTTTCAACG CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAG ACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGC ATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCG TTCTCTTGGAGAGGGCAGCCCAGGCAGCGAAGGACGGAGGGACCGTTGAG ATCGAGATGGACGTCATCGCAACTGCGGATGAACTTCTGGCTGTTCAGGG CAAGATCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTG AGATGCCGCCGGACACCACGGTGGAGAAGACTGGTGCGAAGAGCGCTTGC ATCACGACAGGAGGTGAGACGGTGTACTAAAGGTATTTCGATTGTTGAAA TTCAGTTCAAACCAACATGGTGGAGATTTTCTGACGATGGAACAAGCGGG GAATTACAAATTTGCCGACGGCGGAAAAACGGGGAATTATAATATTTTGC ATTGCTTCTGCCGTCACGTGCAGGCTTTCGTTCTTCTATTGCCTGCAAGT ACGGTACGTACTGCTGTATCGCCTGTCCCTTCGAACTACCGGTACACAGC GATGAAATTATTCATATGGTATTCCGCTGAAGTATTTTTTTTAATATACA TATGTTTTGGGGGGCAATATATATTTTACCGTATACACCGGAGTTTGTTT TTATTTTACTTTTTATGTTGTGGTAGGCATTACACCCCAGGAGTTAAAGG TGTGTGTTTGTTTTTTATTATTATTTATTTTTTGTTTGTTGTGGCAGGCA ATACGATTAATAATTGTACTGCTTTGCGGAGTATTTTCTTTTTAACACAA TTTCCTTTGTTTGCATACGCCCCAATTTTCGCACCAGGCAAGGAGAAGCT GCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTGCGGC CGCGCATCATCTACAAGGGGAACCCTTTTGTCGGGGGTACCAACAAGTCA GGCTCAGCCAAGAAGCCTGGCAAGAACAGCCTGTCGTACGAGCACCTCCC AGACAAGCGGACGAGCTTCGGCTACCCGGCTGGCGGCATCAGCCTCGGGG TGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCGACGAGTGGGTAACC CAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGTCCCAG CGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTTCCAAA AGAAGCTAATGGACCTGGCCAAGACGCTGGTGGTGATGCTTGGTGGAGGG CTGACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAGTTCAA GCGAGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGAGC GCTCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGGCTGGTCGCGACGTGG GTAAAGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGCTT CAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGACCACGCGT GGTGCATCTACACGTTCGGAGACAACTACCGCGAGGTTCTTCGCGAGCAG CGCGAGGAGTGGGAGCAAGCGCACGGCATCGGGCTCGAACCGCTCCAGCT ACCGGTCATCCCTACCGGAGACGGCGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:217972..219749-

>mRNA_P-littoralis_Contig144.78.1 ID=mRNA_P-littoralis_Contig144.78.1|Name=mRNA_P-littoralis_Contig144.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1080bp|location=Sequence derived from alignment at P-littoralis_Contig144:217972..219749- (Pylaiella littoralis U1_48)
ATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCCGTC
CCAAGACGAGCCGGAGAAGATGGAAAAAATTCAGAAGCGTTTCAACGCCT
GGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAGACG
AGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGCATT
CATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCATCT
TCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTGAGATGCCG
CCGGACACCACGGTGGAGAAGACTGGTGCGAAGAGCGCTTGCATCACGAC
AGGAGGTGAGACGGAGAAGCTGCGGTACACCGTGGTGCTAGCTGTCCGGG
GTGATGGACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCTTTT
GTCGGGGGTACCAACAACTTCGGCTACCCGGCTGGCGGCATCAGCCTCGG
GGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCGACGAGTGGGTAA
CCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGTCCC
AGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTTCCA
AAAGAAGCTAATGGACCTGGCCAAGACGCTGGTGGTGATGCTTGGTGGAG
GGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAGTTC
AAGCGAGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGA
GCGCTCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGGCTGGTCGCGACGT
GGGTAAAGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGC
TTCAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGACCACGC
GTGGTGCATCTACACGTTCGGAGACAACTACCGCGAGGTTCTTCGCGAGC
AGCGCGAGGAGTGGGAGCAAGCGCACGGCATCGGGCTCGAACCGCTCCAG
CTACCGGTCATCCCTACCGGAGACGGCGTC
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