mRNA_P-littoralis_Contig1435.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1435.8.1
Unique NamemRNA_P-littoralis_Contig1435.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 8.450e-76
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKRSTP 372
            MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDK+  P
Sbjct:  501 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKKYP 624          
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: D7FZS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS5_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 5.480e-73
Identity = 108/124 (87.10%), Postives = 115/124 (92.74%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKRSTP 372
            MTVGKQHDGYWTSDRMCAQLPAAIA FEL++GPHRQGV IFDNSTGHN YDDDALLAHK+SLAPGGEK ALRVFEDDNG+TVHPT Q+G TLLTDKKIFLPKTEAQ+K KGRKFGTGLDK+  P
Sbjct:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYP 124          
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 5.400e-67
Identity = 109/124 (87.90%), Postives = 114/124 (91.94%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKRSTP 372
            MTVGKQ DGYWTSDRMCAQLPAA+A FEL+NGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEK ALRVFEDDNG+ VHPTFQ GDTLLTDKKIFLPKT  QKK+KGRK GTGLDK+  P
Sbjct:  553 MTVGKQQDGYWTSDRMCAQLPAALATFELTNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKTALRVFEDDNGRMVHPTFQDGDTLLTDKKIFLPKTPEQKKIKGRKHGTGLDKKQYP 676          
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: A0A6H5JD27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD27_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.380e-57
Identity = 98/124 (79.03%), Postives = 106/124 (85.48%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKRSTP 372
            M VG+QHDGYWTSD MCAQLPA IAM EL++GPHRQGVFIFDNSTGHN YD DALLAH I+LAPGGEK ALRVFED +GK V+PTFQ+GDTLLTD+KIFLPKTE QKK K RK GT LDK   P
Sbjct:  368 MPVGQQHDGYWTSDDMCAQLPAIIAMAELTSGPHRQGVFIFDNSTGHNPYDADALLAHNINLAPGGEKVALRVFEDVDGKKVYPTFQLGDTLLTDRKIFLPKTEEQKKNKKRKSGTALDKDKFP 491          
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: A0A6H5KE66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE66_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.690e-39
Identity = 77/121 (63.64%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKR 363
            MTVG+QHD YWTSDRMCA+LPA IAM EL++GPHRQ V IFDNSTGHNAY +DALLAHKI++APGGEK ALRVFEDDNG TV                       +KK K RK GT LDK+
Sbjct:  360 MTVGQQHDRYWTSDRMCARLPAIIAMVELTSGPHRQDVLIFDNSTGHNAYGEDALLAHKINMAPGGEKGALRVFEDDNGNTV-----------------------EKKQKERKNGTALDKK 457          
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.270e-28
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQ 318
            MTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G  VH TF+ GDT+L D  ++  KT  Q
Sbjct:   91 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQ 196          
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.570e-28
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQ 318
            MTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G  VH TF+ GDT+L D  ++  KT  Q
Sbjct:  524 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQ 629          
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: A0A6H5JRU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.730e-27
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQ 318
            MTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G  VH TF+ GDT+L D  ++  KT  Q
Sbjct:  264 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILD-FLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQ 368          
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.200e-27
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIF 297
            MTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G  VH TF+ GDT+L D  ++
Sbjct:  978 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLLDTHVY 1076          
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Match: A0A6H5KGB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.220e-26
Identity = 63/133 (47.37%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQK---KMKGRKFGT----GLDKRSTPSE 378
            + VGK  DGYW  +R+C QLPA  A FELS  P RQ + +FDNSTGHNA+  DAL A  I+L+ GGE+     FE  NG+T++ TFQ+GD L      F  KTE +K   K  G+K G      + ++ TPSE
Sbjct:  177 LRVGKNLDGYWDCNRLCVQLPAIFAAFELSREPGRQMLMVFDNSTGHNAFSPDALRAQNIALSAGGEQVPPHSFEY-NGRTIYTTFQLGDKLRFKTAPFARKTEEEKTAKKRNGKKLGVFPIGTVIRQGTPSE 308          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1435.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJM4_9PHAE8.450e-7697.58Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
D7FZS5_ECTSI5.480e-7387.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K550_9PHAE5.400e-6787.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD27_9PHAE1.380e-5779.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE66_9PHAE1.690e-3963.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JT56_9PHAE1.270e-2852.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K659_9PHAE2.570e-2852.83Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU6_9PHAE1.730e-2752.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K527_9PHAE4.200e-2753.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGB3_9PHAE9.220e-2647.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1435contigP-littoralis_Contig1435:14499..15091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZS5
Model size593
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.02e-74
EggNOG OGs2D16T@1|root,2SGXK@2759|Eukaryota
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.1199088-CDS-P-littoralis_Contig1435:14498..150801680789676.1199088-CDS-P-littoralis_Contig1435:14498..15080Pylaiella littoralis U1_48CDSP-littoralis_Contig1435 14499..15080 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.1316733-UTR-P-littoralis_Contig1435:15080..150911680789676.1316733-UTR-P-littoralis_Contig1435:15080..15091Pylaiella littoralis U1_48UTRP-littoralis_Contig1435 15081..15091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1435.8.1prot_P-littoralis_Contig1435.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1435 14499..15080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1435.8.1

>prot_P-littoralis_Contig1435.8.1 ID=prot_P-littoralis_Contig1435.8.1|Name=mRNA_P-littoralis_Contig1435.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAY
DDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFL
PKTEAQKKMKGRKFGTGLDKRSTPSEPESRLDRRCSGSTKEVSRCSRRWG
CGGLTARGRRGSSSAATSARPTTRPHGKRSQHSTKAASSVRGF*
back to top

mRNA from alignment at P-littoralis_Contig1435:14499..15091+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1435.8.1 ID=mRNA_P-littoralis_Contig1435.8.1|Name=mRNA_P-littoralis_Contig1435.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=593bp|location=Sequence derived from alignment at P-littoralis_Contig1435:14499..15091+ (Pylaiella littoralis U1_48)
ATGACTGTTGGGAAGCAGCATGATGGCTACTGGACGAGCGACCGCATGTG CGCCCAACTACCGGCGGCTATCGCTATGTTCGAGCTGTCGAACGGGCCGC ACCGCCAGGGTGTCTTCATCTTCGACAATTCCACTGGGCACAACGCCTAC GACGACGACGCGTTGCTGGCCCACAAGATCAGCTTGGCGCCGGGTGGGGA GAAGGCCGCGCTCAGGGTGTTCGAGGATGACAACGGGAAAACGGTACACC CTACATTTCAGGTTGGTGACACCCTGCTCACCGACAAGAAGATATTCTTA CCGAAGACAGAGGCGCAGAAGAAGATGAAAGGGCGCAAATTTGGAACGGG GCTTGACAAAAGAAGTACCCCGTCGGAACCAGAGTCACGTCTGGATCGCC GCTGCTCGGGCTCAACAAAGGAGGTGAGCAGATGCTCAAGGAGATGGGGT TGTGGCGGCTTGACGGCGAGAGGGCGAAGGGGCTCGTCAAGTGCTGCAAC AAGTGCAAGGCCGACAACGCGGCCTCACGGCAAGCGATCGCAGCATTCAA CAAAGGCGGCGAGCAGCGTGAGAGGGTTCTAGAGCAAGCGCGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1435:14499..15091+

>mRNA_P-littoralis_Contig1435.8.1 ID=mRNA_P-littoralis_Contig1435.8.1|Name=mRNA_P-littoralis_Contig1435.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig1435:14499..15091+ (Pylaiella littoralis U1_48)
ATGACTGTTGGGAAGCAGCATGATGGCTACTGGACGAGCGACCGCATGTG
CGCCCAACTACCGGCGGCTATCGCTATGTTCGAGCTGTCGAACGGGCCGC
ACCGCCAGGGTGTCTTCATCTTCGACAATTCCACTGGGCACAACGCCTAC
GACGACGACGCGTTGCTGGCCCACAAGATCAGCTTGGCGCCGGGTGGGGA
GAAGGCCGCGCTCAGGGTGTTCGAGGATGACAACGGGAAAACGGTACACC
CTACATTTCAGGTTGGTGACACCCTGCTCACCGACAAGAAGATATTCTTA
CCGAAGACAGAGGCGCAGAAGAAGATGAAAGGGCGCAAATTTGGAACGGG
GCTTGACAAAAGAAGTACCCCGTCGGAACCAGAGTCACGTCTGGATCGCC
GCTGCTCGGGCTCAACAAAGGAGGTGAGCAGATGCTCAAGGAGATGGGGT
TGTGGCGGCTTGACGGCGAGAGGGCGAAGGGGCTCGTCAAGTGCTGCAAC
AAGTGCAAGGCCGACAACGCGGCCTCACGGCAAGCGATCGCAGCATTCAA
CAAAGGCGGCGAGCAGCGTGAGAGGGTTCTAG
back to top