mRNA_P-littoralis_Contig141.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.17.1
Unique NamemRNA_P-littoralis_Contig141.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5K1X5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.670e-18
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQENPLPQLGIAVFCHRMH*C*FGSLLFFEVWE*GLRFSMFDPS--NSTPEESSLLLS 366
            L++R+DCTR+TRV FL+ KSDAA +F+ YLA++R +  P  V +  TD GG+F G+F EVCR   IKQE   P         ++  C F  +L  EV   GL     D    ++T EE   LL+
Sbjct:   13 LIIRDDCTRWTRVFFLKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTP------KVDPCSFRKVLDGEVL--GLIVIYVDDIMLSATEEEREELLA 128
[Close]
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 6.510e-18
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQENPLP 219
            L++R+DCTR+TRV FL+ KSDAA +F+ YLA++R +  P  V +  TD GG+F G+F EVCR   IKQE   P
Sbjct:   13 LIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPP 85
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BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.370e-17
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQENPLP 219
            L++R+DCTR+TRV FL+ KSDAA +F+ YLA++R +  P  V +  TD GG+F G+F EVCR   IKQE   P
Sbjct:  217 LIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPP 289
[Close]
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.010e-17
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQENPLP 219
            L++R+DCTR+TRV F++ KSDAA +F+ YLA++R +  P  V +  TD GG+F G+F EVCR   IKQE   P
Sbjct:   73 LIIRDDCTRWTRVFFMKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPP 145
[Close]
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5KKV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.210e-15
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDF-DGEFEEVCR 186
            LVVR+DCTR+ RV FL+ KSDAA +F+ YLAE+R DGAP  V +V +D GG+F +GEF ++CR
Sbjct:   48 LVVRDDCTRWNRVYFLKNKSDAAEAFERYLAENRADGAPSEVMVVRSDNGGEFFEGEFGKLCR 110
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BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5JTY1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.260e-15
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQENPLP 219
            L++R+DCTR+TRV FL+ KSDAA +F+ YLA++R +  P  V    TD GG+F  +F E CR   IKQE   P
Sbjct:  257 LIIRDDCTRWTRVFFLKHKSDAAAAFERYLADYRAETVPCEVFFARTDGGGEFQAQFAEFCRRYGIKQEFTPP 329
[Close]
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.520e-15
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQENPLPQLGI 231
            L++R+D +R+TRV FL+ KSDAA  F+ +LA++R +G P  V I  TD GG+F G+F EVCR   IKQE   P   I
Sbjct:  504 LIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPI 580
[Close]
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.660e-15
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQE-NPL-PQL 225
            L++R+D +R+TRV FL+ KSDAA  F+ +LA++R  G P  V I  TD GG+F G+F EVCR   IKQE  PL PQ+
Sbjct:  217 LIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPLTPQI 293
[Close]
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5KHM3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHM3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.690e-15
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQENPLP 219
            L++R+D +R+TRV FL+ KSDAA  F+ +LA++R  G P  V I  TD GG+F G+F EVCR   IKQE   P
Sbjct:   13 LIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVYIARTDGGGEFQGQFVEVCRIHGIKQEFTPP 85
[Close]
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5K2Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y3_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 7.820e-15
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQENPLP 219
            L++R+  +R+TRV FL+ KSDAA  F+ +LA++R  G P  V I  TD GG+F G+F EVCR   IKQE   P
Sbjct:   66 LIMRDHFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPP 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1X5_9PHAE1.670e-1841.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKB4_9PHAE6.510e-1853.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE2.370e-1753.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF14_9PHAE7.010e-1752.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKV4_9PHAE1.210e-1560.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTY1_9PHAE1.260e-1550.68Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KPZ8_9PHAE1.520e-1550.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JGJ0_9PHAE1.660e-1553.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHM3_9PHAE2.690e-1552.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2Y3_9PHAE7.820e-1550.68Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:109466..109955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3750.XP_008387235.1
PFAMsSpc97_Spc98
Model size491
Max annot lvl35493|Streptophyta
KEGG koko:K16570
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030863,GO:0030981,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0065003,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903047
Exons1
Evalue0.000438
EggNOG OGsCOG2801@1|root,KOG2000@1|root,KOG0017@2759|Eukaryota,KOG2000@2759|Eukaryota,37Q6F@33090|Viridiplantae,3G87I@35493|Streptophyta,4JF2T@91835|fabids
DescriptionGamma-tubulin complex is necessary for microtubule nucleation at the centrosome
Cds size258
COG categoryZ
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.9284377-UTR-P-littoralis_Contig141:109465..1096971680789660.9284377-UTR-P-littoralis_Contig141:109465..109697Pylaiella littoralis U1_48UTRP-littoralis_Contig141 109466..109697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.9380884-CDS-P-littoralis_Contig141:109697..1099551680789660.9380884-CDS-P-littoralis_Contig141:109697..109955Pylaiella littoralis U1_48CDSP-littoralis_Contig141 109698..109955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.17.1prot_P-littoralis_Contig141.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 109698..109955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.17.1

>prot_P-littoralis_Contig141.17.1 ID=prot_P-littoralis_Contig141.17.1|Name=mRNA_P-littoralis_Contig141.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKG
GDFDGEFEEVCRELCIKQENPLPQLGIAVFCHRMH*
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mRNA from alignment at P-littoralis_Contig141:109466..109955-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.17.1 ID=mRNA_P-littoralis_Contig141.17.1|Name=mRNA_P-littoralis_Contig141.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=490bp|location=Sequence derived from alignment at P-littoralis_Contig141:109466..109955- (Pylaiella littoralis U1_48)
CTCGTAGTTAGGGAAGATTGCACGAGGTATACCCGCGTCCTGTTTTTGCG
GCAAAAGTCAGACGCCGCGGGATCGTTCAAGAGTTACCTAGCCGAACACC
GACCGGACGGTGCTCCACTCGCGGTCAAAATTGTGCACACCGACAAAGGA
GGGGACTTTGATGGAGAGTTCGAAGAAGTGTGCCGTGAGCTCTGCATCAA
GCAAGAAAATCCTCTGCCGCAGCTTGGAATTGCCGTTTTCTGCCACCGTA
TGCATTAGTGCTAGTTCGGTTCTCTTCTATTTTTCGAGGTGTGGGAGTAG
GGACTGAGGTTCAGTATGTTCGATCCAAGTAATTCGACTCCAGAGGAGTC
AAGCCTTCTCTTGAGTTGATAAGTATCTGCATATATATACTGCCCCTCAG
GGTCGGCTGGTGTCATGGTATTGTGGAGCATACCGTAGATCCAGTACCGT
AGACGGGTATATCCCGTCAGAGTTCCGTAGAGACATCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig141:109466..109955-

>mRNA_P-littoralis_Contig141.17.1 ID=mRNA_P-littoralis_Contig141.17.1|Name=mRNA_P-littoralis_Contig141.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig141:109466..109955- (Pylaiella littoralis U1_48)
CTCGTAGTTAGGGAAGATTGCACGAGGTATACCCGCGTCCTGTTTTTGCG
GCAAAAGTCAGACGCCGCGGGATCGTTCAAGAGTTACCTAGCCGAACACC
GACCGGACGGTGCTCCACTCGCGGTCAAAATTGTGCACACCGACAAAGGA
GGGGACTTTGATGGAGAGTTCGAAGAAGTGTGCCGTGAGCTCTGCATCAA
GCAAGAAAATCCTCTGCCGCAGCTTGGAATTGCCGTTTTCTGCCACCGTA
TGCATTAG
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