prot_P-littoralis_Contig141.17.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig141.17.1
Unique Nameprot_P-littoralis_Contig141.17.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length86
Homology
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5K1X5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.170e-19
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQE 69
            L++R+DCTR+TRV FL+ KSDAA +F+ YLA++R +  P  V +  TD GG+F G+F EVCR   IKQE
Sbjct:   13 LIIRDDCTRWTRVFFLKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQE 81          
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.230e-19
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQE 69
            L++R+DCTR+TRV FL+ KSDAA +F+ YLA++R +  P  V +  TD GG+F G+F EVCR   IKQE
Sbjct:   13 LIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQE 81          
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.200e-18
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQE 69
            L++R+DCTR+TRV FL+ KSDAA +F+ YLA++R +  P  V +  TD GG+F G+F EVCR   IKQE
Sbjct:  217 LIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQE 285          
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.000e-18
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQE 69
            L++R+DCTR+TRV F++ KSDAA +F+ YLA++R +  P  V +  TD GG+F G+F EVCR   IKQE
Sbjct:   73 LIIRDDCTRWTRVFFMKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQE 141          
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5KKV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.790e-17
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDF-DGEFEEVCR 62
            LVVR+DCTR+ RV FL+ KSDAA +F+ YLAE+R DGAP  V +V +D GG+F +GEF ++CR
Sbjct:   48 LVVRDDCTRWNRVYFLKNKSDAAEAFERYLAENRADGAPSEVMVVRSDNGGEFFEGEFGKLCR 110          
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5JTY1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.250e-16
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQE 69
            L++R+DCTR+TRV FL+ KSDAA +F+ YLA++R +  P  V    TD GG+F  +F E CR   IKQE
Sbjct:  257 LIIRDDCTRWTRVFFLKHKSDAAAAFERYLADYRAETVPCEVFFARTDGGGEFQAQFAEFCRRYGIKQE 325          
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.350e-16
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQENPLPQLGI 77
            L++R+D +R+TRV FL+ KSDAA  F+ +LA++R +G P  V I  TD GG+F G+F EVCR   IKQE   P   I
Sbjct:  504 LIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPI 580          
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.670e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQE-NPL-PQL 75
            L++R+D +R+TRV FL+ KSDAA  F+ +LA++R  G P  V I  TD GG+F G+F EVCR   IKQE  PL PQ+
Sbjct:  217 LIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPLTPQI 293          
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5KHM3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHM3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.810e-16
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQE 69
            L++R+D +R+TRV FL+ KSDAA  F+ +LA++R  G P  V I  TD GG+F G+F EVCR   IKQE
Sbjct:   13 LIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVYIARTDGGGEFQGQFVEVCRIHGIKQE 81          
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Match: A0A6H5K2Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.350e-16
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0
Query:    1 LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKGGDFDGEFEEVCRELCIKQE 69
            L++R+  +R+TRV FL+ KSDAA  F+ +LA++R  G P  V I  TD GG+F G+F EVCR   IKQE
Sbjct:   66 LIMRDHFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVHIARTDGGGEFQGQFAEVCRRHGIKQE 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.17.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1X5_9PHAE3.170e-1955.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKB4_9PHAE6.230e-1955.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE2.200e-1855.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF14_9PHAE6.000e-1853.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKV4_9PHAE8.790e-1760.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTY1_9PHAE1.250e-1652.17Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KPZ8_9PHAE1.350e-1650.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JGJ0_9PHAE1.670e-1653.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHM3_9PHAE2.810e-1653.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2Y3_9PHAE8.350e-1652.17Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..74
e-value: 5.2E-5
score: 25.2
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:109698..109955 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.17.1mRNA_P-littoralis_Contig141.17.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig141 109466..109955 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig141.17.1 ID=prot_P-littoralis_Contig141.17.1|Name=mRNA_P-littoralis_Contig141.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
LVVREDCTRYTRVLFLRQKSDAAGSFKSYLAEHRPDGAPLAVKIVHTDKG
GDFDGEFEEVCRELCIKQENPLPQLGIAVFCHRMH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf