mRNA_P-littoralis_Contig141.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.10.1
Unique NamemRNA_P-littoralis_Contig141.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig141.10.1 vs. uniprot
Match: D7FTB1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB1_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 3.500e-59
Identity = 109/154 (70.78%), Postives = 118/154 (76.62%), Query Frame = 1 
Query:    1 MFSLGSSESSTIASSAGGDFRG--PGPLLVAGQDNPRRPKTSDHEDRQLLRLTGFKEEDVELMKVLFDMYDRDRDGVLTVEEACHLCTTLGYHPAENSSIRSSEEGRVSFRQFVQSAGFVRGNHVPPAGRGGHTKNFFRMANRNASTPMTPKQA 456
            MFS  SSESSTI SSAGGDFR   PGPLLVAG+ NPRRPK++DHE RQLLRLTGFKEEDVELMKVLFDMYDRDRDG+LTVEEAC LCT                       QF+QSAGFVRG+HVPP  RGGHTK+FFRMANR++STPM  KQA
Sbjct:    1 MFSFASSESSTIVSSAGGDFRAFKPGPLLVAGEANPRRPKSTDHEHRQLLRLTGFKEEDVELMKVLFDMYDRDRDGMLTVEEACLLCT-----------------------QFIQSAGFVRGSHVPPTARGGHTKHFFRMANRSSSTPMGSKQA 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTB1_ECTSI3.500e-5970.78EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:26489..32236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog9913.ENSBTAP00000029967
Preferred nameCABP2
PFAMsEF-hand_1,EF-hand_5
Model size2187
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0005246,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0007154,GO:0007165,GO:0007600,GO:0007601,GO:0007605,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016247,GO:0023052,GO:0032501,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0050954,GO:0051716,GO:0065007,GO:0065009,GO:0071944,GO:0098772,GO:0099106
Exons5
Evalue1.34e-05
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,38FY2@33154|Opisthokonta,3BKVW@33208|Metazoa,3D3WX@33213|Bilateria,48CDA@7711|Chordata,497G5@7742|Vertebrata,3J8DG@40674|Mammalia,4J77Q@91561|Cetartiodactyla
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-13_003940.1
DescriptionCalcium-binding protein 2 isoform X1
Cds size462
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.10.1prot_P-littoralis_Contig141.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 28494..32236 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.555409-UTR-P-littoralis_Contig141:26488..265821680789660.555409-UTR-P-littoralis_Contig141:26488..26582Pylaiella littoralis U1_48UTRP-littoralis_Contig141 26489..26582 -
1680789660.5748477-UTR-P-littoralis_Contig141:26862..284931680789660.5748477-UTR-P-littoralis_Contig141:26862..28493Pylaiella littoralis U1_48UTRP-littoralis_Contig141 26863..28493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.584832-CDS-P-littoralis_Contig141:28493..286291680789660.584832-CDS-P-littoralis_Contig141:28493..28629Pylaiella littoralis U1_48CDSP-littoralis_Contig141 28494..28629 -
1680789660.6001835-CDS-P-littoralis_Contig141:29558..296271680789660.6001835-CDS-P-littoralis_Contig141:29558..29627Pylaiella littoralis U1_48CDSP-littoralis_Contig141 29559..29627 -
1680789660.612374-CDS-P-littoralis_Contig141:30241..303361680789660.612374-CDS-P-littoralis_Contig141:30241..30336Pylaiella littoralis U1_48CDSP-littoralis_Contig141 30242..30336 -
1680789660.6226099-CDS-P-littoralis_Contig141:32074..322361680789660.6226099-CDS-P-littoralis_Contig141:32074..32236Pylaiella littoralis U1_48CDSP-littoralis_Contig141 32075..32236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.10.1

>prot_P-littoralis_Contig141.10.1 ID=prot_P-littoralis_Contig141.10.1|Name=mRNA_P-littoralis_Contig141.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MFSLGSSESSTIASSAGGDFRGPGPLLVAGQDNPRRPKTSDHEDRQLLRL
TGFKEEDVELMKVLFDMYDRDRDGVLTVEEACHLCTTLGYHPAENSSIRS
SEEGRVSFRQFVQSAGFVRGNHVPPAGRGGHTKNFFRMANRNASTPMTPK
QAG*
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mRNA from alignment at P-littoralis_Contig141:26489..32236-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.10.1 ID=mRNA_P-littoralis_Contig141.10.1|Name=mRNA_P-littoralis_Contig141.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5748bp|location=Sequence derived from alignment at P-littoralis_Contig141:26489..32236- (Pylaiella littoralis U1_48)
ATGTTCTCTCTTGGTAGTTCGGAGTCGTCCACCATTGCTTCTAGCGCTGG
TGGTGACTTCCGTGGCCCGGGCCCCCTCCTTGTCGCGGGTCAGGACAACC
CCCGGCGGCCGAAAACGTCGGACCACGAAGACCGCCAACTACTGCGTTTG
ACTGGGTTTAAGGTACCACACATTTGTCGCTGCTGTTGTTGTTCTTGTTG
TTATTGCTGTGGTCTAGGAATTTAGATACTAAAGTAGACTAGAGGAGTTT
TCGACGTCCATCACTGAATTGCACCCCGAACCGATCCTCATGGCTTACGG
ACACCCGGGAACCGGTTGGAGGACGCCAGAGTATTTTGGTTTTCTACACT
CTGTTTTTATTTCGAACCTGCCATTGAATAATACTCATAGAGGCTGTCGC
TGTGAAAATAACCAGTGTCTGTCTCGGATCCGAGTCCTTACGACGTTCAA
CAGATTCCTCGTTTGCGATTTTTGACACGAGCCGACCCTCATACGGAGTA
TATTTCTGTGAGCTACAAGGCGGAGTTCGAATGCCACACAGCATATTTTT
GGACGCTTTCCAGCACAGAGCATCCGAAAAAGCAGGACATACATGAGTGC
CTGCGGCCTTCAAAGCAATCACGGCGGCGAAGGGTGGGGCATGTGAGAGG
ATATTTGTGCTGACATAAGAGTGGCAGTCGCAGGTTTTCACGTATCTGCT
CCACCGCTTTTTCTGGTGCTGCTATCATGGCCGCTACAGCCGCATCCGAA
CGACGCCTTGTAGCTCACAGAAATCGATGAAGAAGGGGACGCTTCAACGA
TCGTAAACGAAAACATTTGCAGTATATCGCAAGGACTTGTGGATCCTAGA
CACTCGTCATTTTGGTCACAGCGACAGCCTCCAGGAGCACTCTGCGATGA
CAGATCTGTACTAAAGACAAGCATTTGGGAACCCAGAAGATAGAGGCGTT
TGCCGAAAGTCCGTAGAGCTCCTCCGACCTGTTCTCTGGTAGACGTCATG
GCTCAGCATCCAGCAGGGTATCAATACCGAATGCGGCCTTTTCCGACAGC
TCTCAACAAATTTCAGCGGTGCATTAGACTATTGCCGGCGCTGCTGCTTT
CCTTGCTGCGTGGAAGATACCGACCATTCACAATCAGCCCGGGGGGTAGG
ATACACGACGCCATCGAGAAGTGGCGGTAGTAGTTAGAGTTCCGTTCGTG
ATTATCGAGGGCTGCTCTCGCCATTCCCTATACGTCAAAATCAAAACGGT
AGAAGCAGATACGGCTTCGGGATAGGAGGAGAGAGGGCACTGTTATACTA
CTGCAATGCATGCCCTCCTTCGGTGGCGCTCTGTTGACAGAACAACGCGA
TTCCTGCTGCATCTACTTACCGCTCTGCAGCCGCAGTTAAGGTACCACAG
CAGGATTGAGTCCGTACATGAGGACGTACTGCTGCAGCGATACCCCGTAC
GGTATCACGTTCTCAGTAGCCGCAGCAAAATGGAGTCCGCAGGCCGCACG
GTAGTAAGTGGCGGTATCCCGTAGTCATGGCAGACAATACTTCGTATCAA
GCCGGCAATGCCGAAACAACAACCAACGATGGTCTGAACCACCAGTTAAA
ATAGCCCGACGGCGGATACAGCACCTATCTACGAGATACAGGAGTATCAA
AACACCTTGCTTACATGTCAAGTCTGGTGTAAGAAAGGTGTGCGGTTCAG
TAAAATCGGCATGATAAATATCGAAGCCACAGCTGCTCGACCAGGTTGGC
CGGCGAGAAAGCATCGGTTGATTTCGACAGGAGGAACAAGAAAAAGGAAT
GTAGGGATGGGTGCCTGTCTATGCGTGCCCGCAAGCGCAGCGAGGGGACC
AGATTTTTTTCCGACCCTTTATTGGCCGGCACTTATCTGTCGCTGTGCAG
GAAGAAGATGTCGAGCTGATGAAGGTGTTGTTCGACATGTACGACCGAGA
CAGGGACGGGGTGCTAACTGTTGAGGAGGCCTGCCACCTTTGCACGTACG
TGAGATTCCCGCACGTTGTTCGTCGTTTTTGTCTCGCAAAACGTACACGC
TGTTTCATCACTACTTGGTGTGTGCGTCGGTCCATGACACCACAAAACTC
CCTGCTCCAAAGATGCCCCATCCATTTCCGCGCGCGCAACGCGCATACGG
TGCTGATGGAACTACTCGATTTGTCGCTTCGTTTTGGGCAACACAAGGCT
GAAACGACCGCGCTCAGAGTAATTATAGCCGCTGGCCTGCGCGATTGGCC
GAACATTCTTCGCCACTAGCCTCTTTGCAGCTCCGACCAACTCCCCCCCA
ATGCATGCCGGGTCTCTCGGGGGCTTGCTGAGATGCGCGAAGTGGTTCAC
GTACGTCCATAGCACACCGGATGGGATGACGATATGTACCATTGCGCGAT
GCCGCCTCATTCACGCGGTATGATCCCCCTCAAAACAAACCCTCAAAACA
AAATTGAACGTACGAAGTACGAAGTACTTCGCAAAAAAGACAGTTGTCGC
TGCCGTTGCTGCCGCTGCTGCTGCGGTTGCTGCTGCTGTTGCTGCTGCTG
CTGCGGTTGCTGCTGCTGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCT
TGTAAACAGGACCCTTGGTTACCATCCGGCGGAGAATTCCTCGATTCGAT
CTTCGGAAGAGGGCCGTGTGTCGTTCAGGTGGGCACTTGCAACGCCAAAT
ACCTACCGTGGGTCGCACGAGACAACACGGGATCCCCCTGTGGACCGATT
TTGAAAGCTGTGTTACTCCAGCACGGACAGGGTGTCATACCAACATCATG
CACGATGTAGTTTAAGCGTTTTCCCTAAGCTCTCTTTCAAACAGAATGAT
GACTCAACGCGGACGCCTTTTCTCATTTTTTTGCACGGACACATTTTCCG
TGGTGGGGTAATCGAGCTTTGAAAGTTGGTTCAGGAGGTACCCGTGTTGT
AAAGTACGACATGCGACCTACGGGGTAACTGTGTCTTCCATTCGATGGGT
TGTACGGAGTGCGTATCAACCCCCTCCCCCTTGAAGGTGCGTCCTCCCCT
GCAAACTTTGATTCGGTTGCTCCGTGTAGACATACGGAGGAGAACGGGAC
ATCAAATGGTATGCAGTGTAAATCGAGGAGAGCATCGGTTTCCGTCGGTC
TGGTCCCACGCGTGCTTTTGCGATGAAAATATCATTAGACTACAGCCAGC
AGCGGAGAAGGACTACGTCGAGTCGGCCCCAAGAAAGAGATGAAGGCTTC
GAGGGGGGTTAGCAAGGTTCAGAGCGTGGACTTTGGTTACACCCGAGCAA
ACCTCCGGGACAGTAATGATAGTAAGGCAAGAAATGTGCATGCATGATAT
GATGGAGTACCCGATGTCCCAGCGACATAATTAATGGCTTTTGCCCAGCA
AAAACTTCTTTATATTTTTTTCAAAATAGAAAAGTTTTGGTCTACAGCAG
CGGTACACCCTTCGCCATGTGCCTGGAAATATAATATCATCAGGGACGAG
CAGTGGTGTCCCTCCAGTATTATATTATGGGGTTGTTCTGAGTTGTTCGT
AAAGTCCAAATCTGAGGTTGGTTCTCGCGGTTGACCTTTGTTCCGCCAAT
TTTGCAGGCAGTTTGTGCAGTCAGCGGGTTTCGTGAGGGGGAACCATGTG
CCCCCGGCCGGCCGAGGAGGCCACACGAAAAACTTTTTCAGGATGGCCAA
CAGAAACGCTTCCACGCCGATGACACCAAAGCAGGCAGGCTAAGTTCTTG
TGAGGAGTCAGTCACACACAGGGGGGTGCTTTTCACCTTTGATTACGCAG
ATAGATGTATCACAGCTGCCATCATCCGTGGCGGCACTGAAGCGTGTGTG
CGGTACGTCCCGTTTTGGGCACCAATCCGTGTCAATCAGTAGAGCAGCGC
CACGTTGGTTGATTGGTTGAAAGCCAGAGGGGGGTGGTATACGTTTGATC
AGAAATATCACCATATTTATGCTTTGAAAAATACTTCCTACAAATTGGGA
CTTTTGGGCGTTGGGCCAAAATCGGTTGCATGCAGACCAAAGCAGCCAAA
GCTAGCTCGATATTTAATGAAAGGGGTTTTCTTACGACGGTGCCGTTTGT
ACCGTGCCCACCATATGTCACATACGATACCCCGACGATACTCAGAAAGA
TACCTCTCGGTTCTATCGAAGGACTGATCGCGTGCGTTGCGTGCATCATG
TCGATTTACAACGCCGCGTATACGAAGTATACACAGAAAAACAAATCGTA
TGTAGTACAGCTAGTCTTGATTGCGGTTTTAGGGAGCTCGGATAAAGATC
ATGGCCGGATTAAGAGAGAGATCGAAATAGCTTTATTCGGTTAAAGATCA
TCGCCGGTTTTAGAGAGAGGTCGAAATAGCTTTATTGAAAACATTACTTC
GTACACATATATATATTTTTTCTTACAAAGACATCAGTGTGTTAGCCTCT
CCCTAGACGAGGATCCAGCGAGATTAGCAACGAACACAGAGAGTGGTACA
TATACTTGTGTTTCTACAACTCAACAGATAGCATACCGTTGTAGCTCCCC
TGAGGGTATCAGGCTCAACAAGACAATTTGGGAGTCATGTTGTGTGACAC
ACGATACATCATGTGGTGAGTATGTACGGTCTATGTGTGTACTGTGATTG
TTGAACGATTTTATTGGCAGGCATGGCAACCCCTCTCTTGAACCGCCACC
ATGACTGTAACCTGACGAACCGACGTCATGGGGGTGGGTGTGGGACTCCA
CAACCTCCTAACTAACATTTATAACGGCAATGACCCCACCGATTGAAGAA
CCGTTATTCAAAGCTATTTCTACACTGCAATAGCCCACAGCGACATCGAC
GGAAGAGTGCCCCCCCGGTGCCGAAAATGGTGGGTGACGTCACAGTCATC
TCGCCAAGAGGTATCCGACAAGTTTACGGGCGCTGTTTGATGCTTGATTT
TTCGCTGCGGACTAACCGCACTTTAACAATCGGTCCAGGGTGTACCAAGT
CAGGGGGGGCCGTATCGGTTTGACTACATATACGAGTATGCAACAAAGCT
GAAACTAAGGGATCTCAGAAAGAATATATTAATAGTTTTTTTGGTGTGAG
GGAGAGGGGTTGTGATAAAAGGCTGCCGCCCGTTGTGAACGGTATTATTG
TAAGGTGTCATCTGTGCTTCTCCCCGCCCTTGGCCCGACTTATTGACTAT
CTCGTGTAGCCTTTCCGACGACCACTACGTCGTCGTGCTTTGCGCTTTTT
CTCCTGCTCGATCGTGCTCGACACTGCTGCTCTCAACCACGCCGCAGATG
TTCAGTATTTTTCAATCGATTGGGGTGGACATACCTCTGCCGGCGGTCGA
GCGAATCACGACAACCATCAGCAAGTGAGCTGGCGTCGGTGAAATACCGC
AGAGAGAAAGTTCGAGTTGTATCGGGGAAATGTCCGCGGGTCCGGTCTAT
ATTGCACACCGAAGAAAAATTGGCTGCCGCCGCATGACACCCTCACACAC
ATATACATACGAATTCCTTGTAAACTTACCACTGTCGCACCACAACCCTG
ACGACACCTGTGAATGCCTTTTGCAGCAGGAATACGTATTAACTACTGTA
GTAGCTTGTGTCGTACGTTATGAATTGATCAACCACGCGGTTGCTTTTTC
GCAGCGATGGAGAGCCGCAGTTCACGGAAGAGGAGCTGGTGAACCACGTG
GCCTATATCCAGGGTCGGCAGGCCGCCTTGTCACAGAAAAAAAGCTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig141:26489..32236-

>mRNA_P-littoralis_Contig141.10.1 ID=mRNA_P-littoralis_Contig141.10.1|Name=mRNA_P-littoralis_Contig141.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig141:26489..32236- (Pylaiella littoralis U1_48)
ATGTTCTCTCTTGGTAGTTCGGAGTCGTCCACCATTGCTTCTAGCGCTGG
TGGTGACTTCCGTGGCCCGGGCCCCCTCCTTGTCGCGGGTCAGGACAACC
CCCGGCGGCCGAAAACGTCGGACCACGAAGACCGCCAACTACTGCGTTTG
ACTGGGTTTAAGGAAGAAGATGTCGAGCTGATGAAGGTGTTGTTCGACAT
GTACGACCGAGACAGGGACGGGGTGCTAACTGTTGAGGAGGCCTGCCACC
TTTGCACGACCCTTGGTTACCATCCGGCGGAGAATTCCTCGATTCGATCT
TCGGAAGAGGGCCGTGTGTCGTTCAGGCAGTTTGTGCAGTCAGCGGGTTT
CGTGAGGGGGAACCATGTGCCCCCGGCCGGCCGAGGAGGCCACACGAAAA
ACTTTTTCAGGATGGCCAACAGAAACGCTTCCACGCCGATGACACCAAAG
CAGGCAGGCTAA
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