mRNA_P-littoralis_Contig1404.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1404.1.1
Unique NamemRNA_P-littoralis_Contig1404.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 6.320e-62
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKE LFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL  RKE SITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:   19 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119
[Close]
BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 6.580e-56
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKE LFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL  RKE SIT+V + +QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  221 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNLQ 321
[Close]
BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 6.760e-56
Identity = 87/100 (87.00%), Postives = 89/100 (89.00%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFVMNL 340
            DVLKE LFLRQVWRFMLP AGMPCIPVFEDN   IQIAHNPITNSNSKHIDVRHHFIREL  RKE SITHVTSE+QH D LTKAIS+ESF LHRDFVMNL
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
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BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.350e-55
Identity = 88/98 (89.80%), Postives = 91/98 (92.86%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFVM 334
            DVLKE LFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL  RKE SITHVTSE+QHADFLTKA S+ESF LHRDFV+
Sbjct:  211 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESFALHRDFVI 308
[Close]
BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 3.870e-55
Identity = 88/101 (87.13%), Postives = 92/101 (91.09%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKE LFLRQVWRFMLP A MPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIREL  RKE SITHV +++QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  276 DVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376
[Close]
BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 6.290e-55
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKE LFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL  RKE SITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct: 1372 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472
[Close]
BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 8.360e-55
Identity = 89/101 (88.12%), Postives = 92/101 (91.09%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKE LFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL  RKE SITHV + +QHADFLTKAIS+ES  LHRDFVMNLQ
Sbjct:  338 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNLQ 438
[Close]
BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 4.780e-54
Identity = 87/97 (89.69%), Postives = 89/97 (91.75%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFV 331
            DVLKE LFLRQVWRFMLP  GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL  RKE SITHVTSE+QHADFLTKAIS+ESF LHRDF 
Sbjct:  313 DVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFA 409
[Close]
BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 7.190e-54
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKE LFLRQVWRFM P A MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL  RKE SITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  679 DVLKEVLFLRQVWRFMWPDASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 779
[Close]
BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.040e-53
Identity = 90/101 (89.11%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:   41 DVLKEALFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKETSITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKE LFLRQVWRFMLP AGMPCIPVFEDNQGAIQIA+NPITNSNSKHIDVRHHFIREL  RKE SITHVTSE+QHADFLTKAIS+ESF LHRDFVMN++
Sbjct:  728 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNMR 828
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1404.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE6.320e-6292.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE6.580e-5688.12Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE6.760e-5687.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE1.350e-5589.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE3.870e-5587.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE6.290e-5592.08Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JEF2_9PHAE8.360e-5588.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3H4_9PHAE4.780e-5489.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE7.190e-5490.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQN5_9PHAE1.040e-5389.11Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1404contigP-littoralis_Contig1404:10021..10366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7070.TC002223-PA
PFAMsDUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size346
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.05e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta
DescriptionEncoded by
Cds size261
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.064858-UTR-P-littoralis_Contig1404:10020..101051680789659.064858-UTR-P-littoralis_Contig1404:10020..10105Pylaiella littoralis U1_48UTRP-littoralis_Contig1404 10021..10105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.0747316-CDS-P-littoralis_Contig1404:10105..103661680789659.0747316-CDS-P-littoralis_Contig1404:10105..10366Pylaiella littoralis U1_48CDSP-littoralis_Contig1404 10106..10366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1404.1.1prot_P-littoralis_Contig1404.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1404 10106..10366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1404.1.1

>prot_P-littoralis_Contig1404.1.1 ID=prot_P-littoralis_Contig1404.1.1|Name=mRNA_P-littoralis_Contig1404.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELAARKE
TSITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ*
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mRNA from alignment at P-littoralis_Contig1404:10021..10366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1404.1.1 ID=mRNA_P-littoralis_Contig1404.1.1|Name=mRNA_P-littoralis_Contig1404.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=346bp|location=Sequence derived from alignment at P-littoralis_Contig1404:10021..10366+ (Pylaiella littoralis U1_48)
GTGAGTTTTCTAGAAGTAGTGCCGTTTGTATTTTTCGATTGATGTCTTGA
AGGAAGCGTTGTTTTTGAGGCAGGTTTGGCGTTTTATGTTGCCAACAGCG
GGCATGCCTTGCATCCCAGTGTTCGAGGACAACCAGGGTGCGATTCAGAT
CGCCCACAATCCAATCACCAACTCGAACTCGAAGCACATAGACGTACGGC
ATCACTTTATCAGGGAACTGGCAGCGAGGAAGGAGACTTCGATCACACAC
GTGACGTCGGAATATCAGCATGCAGATTTCTTGACGAAAGCAATCAGCAG
GGAGTCTTTTGAACTGCACCGTGATTTTGTGATGAATTTGCAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1404:10021..10366+

>mRNA_P-littoralis_Contig1404.1.1 ID=mRNA_P-littoralis_Contig1404.1.1|Name=mRNA_P-littoralis_Contig1404.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1404:10021..10366+ (Pylaiella littoralis U1_48)
ATGTTGCCAACAGCGGGCATGCCTTGCATCCCAGTGTTCGAGGACAACCA
GGGTGCGATTCAGATCGCCCACAATCCAATCACCAACTCGAACTCGAAGC
ACATAGACGTACGGCATCACTTTATCAGGGAACTGGCAGCGAGGAAGGAG
ACTTCGATCACACACGTGACGTCGGAATATCAGCATGCAGATTTCTTGAC
GAAAGCAATCAGCAGGGAGTCTTTTGAACTGCACCGTGATTTTGTGATGA
ATTTGCAGTGA
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