mRNA_P-littoralis_Contig140.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.53.1
Unique NamemRNA_P-littoralis_Contig140.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig140.53.1 vs. uniprot
Match: A0A6H5K005_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K005_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.840e-14
Identity = 60/108 (55.56%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:  169 RQATLQHQGRRDAHGSSNSHRRHKPAYIDPSPGSFSAPVARLSKWPKNVYFASDFIADKAAAA------TAAGVRRRAPRRRGNKASETEHGPRGTRVRHE--PVTRM 468
            +QATLQ Q  +D   S+NS RR  P Y     G+FS PVA LSKWPKNV+FASDFIADKAAAA      T    R  APR R N     E G RG+RV  E  PVTRM
Sbjct:   36 KQATLQSQQSQDVGNSANS-RRPTPTYSKTGSGAFSKPVAHLSKWPKNVFFASDFIADKAAAAACRKRSTVKSSRGAAPRCRRNAGEGKEMG-RGSRVLGEKAPVTRM 141
[Close]
BLAST of mRNA_P-littoralis_Contig140.53.1 vs. uniprot
Match: D7G6P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P3_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.510e-12
Identity = 62/116 (53.45%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:  169 RQATLQHQGRRDAHGSSNSHRRHKPAYIDPSPGSFSAPVARLSKWPKNVYFASDFIADKAAAAT----AAGVRRR---APRRRGNKASETEHGPRGTRVRHE--PVTRMKMPSAAS 489
            RQATLQ Q   D   S+NS RR  P Y     G+FS PV RLSKWPKNV+FASDFIADKAAAA     + G   R   APR R N A E +   RG+R   E  PVTRMK  S+ +
Sbjct:    8 RQATLQSQ---DVENSTNS-RRPSPKYSKTGSGAFSTPVVRLSKWPKNVFFASDFIADKAAAAACRKRSTGKSSRGGAAPRCRRN-AGEGKTMGRGSRAMGEEAPVTRMKENSSTT 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K005_9PHAE8.840e-1455.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6P3_ECTSI3.510e-1253.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:242293..246014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size491
Hectar predicted targeting categoryother localisation
Exons2
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789656.325982-UTR-P-littoralis_Contig140:242292..2424421680789656.325982-UTR-P-littoralis_Contig140:242292..242442Pylaiella littoralis U1_48UTRP-littoralis_Contig140 242293..242442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789656.3350165-CDS-P-littoralis_Contig140:242442..2424661680789656.3350165-CDS-P-littoralis_Contig140:242442..242466Pylaiella littoralis U1_48CDSP-littoralis_Contig140 242443..242466 +
1680789656.3469698-CDS-P-littoralis_Contig140:245699..2460141680789656.3469698-CDS-P-littoralis_Contig140:245699..246014Pylaiella littoralis U1_48CDSP-littoralis_Contig140 245700..246014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.53.1prot_P-littoralis_Contig140.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 242443..246014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.53.1

>prot_P-littoralis_Contig140.53.1 ID=prot_P-littoralis_Contig140.53.1|Name=mRNA_P-littoralis_Contig140.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MHPAMQRQATLQHQGRRDAHGSSNSHRRHKPAYIDPSPGSFSAPVARLSK
WPKNVYFASDFIADKAAAATAAGVRRRAPRRRGNKASETEHGPRGTRVRH
EPVTRMKMPSAAS
back to top

mRNA from alignment at P-littoralis_Contig140:242293..246014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.53.1 ID=mRNA_P-littoralis_Contig140.53.1|Name=mRNA_P-littoralis_Contig140.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3722bp|location=Sequence derived from alignment at P-littoralis_Contig140:242293..246014+ (Pylaiella littoralis U1_48)
GTCGGGGGCTGTCACCACTCGTTGTCCAACGTCTGGTTGTCTTCGTAGAA
GGTGGAACACGCAAAACACATTCATGCGCACACGCGAGAAATCATGCTCT
TCGAACCGGTAGGATATACCCGCGTGTGAGGGACCACTCCCCGTAGCAGC
ATGCATCCAGCGATGCAGCGGCAGGTAAGCTCCAGACTCTCGAAGACATA
GTGGGTGTACGATGATGAAACACGCCAATACAAAACGCTCTATATCGAAG
ACGGTGCTTGAATTCGATTCGAGCACTTGTGTGTGGTGAGTGAACGGATC
ATGGTCAAAGAATATTTGGATCACGCCGGGAACCAGCGAAACAACCATAT
TTCGTCCCCCACACGAAAAAGTTTCAACCACCAATCAATCTACTTTTTTT
CTACTTTTTGGATTTGATTCCCGACCATCCAAGGGACCTGGATCATCTTG
ATGGCCAGACGTGAAGGATATAGCATACTCGAAGAAAAATCTGATAGATG
ACGTAAGGGTCTATCTACAGCAGTACATAGATGTGCACGTGTTGTCATCC
CATCTGTTCTGGACGCCAGTCTACACCGTACAAGTTGGGGCGCACCGGCC
GGGGTTACACTCTGTGCAGAGATGGAGAAAGTTCAAAACAGTAATTTATT
CTCCTTCCTCTACGGTGCTTGACTTGGCTTTTATCGCAAGAAGGGTCCTG
CCGTCCCTTCCCCTCGTAGCCTTTCGAGTCGAAATTGGTATTAAAAGTCA
CGAAATAATCGCTTCATTCCGCAGTTTTTGTGTGAGATCCAAGATAATCC
CATTTCATCGGTATTCGAACTCACGACCTACCAGGTAGCTGCCAGAAGGG
TTTGAGGTTTCCTTCTCGACCATCGAGGCAATAGGTCGTTGATGCACCGT
GAGGATGGTATGGATGTATGAGAGGTTTCGTTAATGCCATCGGCATGAGT
CGATGTTCCGAAGAGCAAAACATCCTAAATTCTGGGGCTGCGCCGCACGG
TAACGTTTTGTTTTTCTCGGTTTCCACCGAGCACCCCAGCTATTGCGACG
ATGATATCACAAGAGTAATCCACGGTCCCACGACCTCCTGGTCTTTATAC
CACGAACCAAAAATACGTAGCACCCGCACGTAAACGTTGGACGCTAGCGT
TTGACTTTGATTCGGAAGAAAACGTGCGAAAAATTGCGCGAATATATCGT
CTACTGTAGGACTGTCGCGGAAGTAGCCTCAGGTCCCCCCCCCGCCCTCC
GACGTCGGCAGCGGCAGCGCGATGAAGCGGGGAACGGTCCACACGACGTT
CTGGGTCATGTTGCCAGCCCTTCGACGCTTGCTTGTCGGAGAAATGATCC
ATGTCCTTCGCGTTGGCTACAGCACTCAGATGCGGTTGCGTAGTGACCCC
GGAAGACACTGTGTGTAGGTTACCTGCATTCGCAACGGGCACTTCACCAA
CGAGAAAAAAACAATACTTTTGTCTGTGTTTTGGGCATCTGCACTGTTTG
CGTGCACTATGCCGAGTGTCGTTCGGGGTAATTCCGGATCTGAATGGTGT
AGCCGACGTGGAGGGCATGGATGATTTCTCCGACGAGCTAGCGTCGACGA
GGGATATCAGCATGAAAACGTCGTGTGGACCTATCCCCGCTTCCCCGTGC
TGCCGCTGCCGCTGCCGCTGCCGCTGCTGGACGGCAGGGGAGCGACCTGA
GGCTATTTCCGCCGCCGCGGCGATGCTGCTACCGAGAAACACGATCCGGT
ACGTGCCTCCAACTCCGATTTCCTCGGCACCTCCTGCTGAGCCTACACTG
TCTGTGCCAGCTGCGCAGTCTACACTGCGCCTGGGACGCCATATGCTGCG
TCTTCGCGGACTACGCCGTCTGCAGCTTCTTCGCGGGGTACGCCATCTAC
CGCGTCTGTGCCGCCCACATCCTCTGCCGCCTCAACGTCGTCCACGCCCG
CTATGCCCCACCGCTACCGTGTTGCCAGCGCTTCCATTGACAAGCTATCC
ACCAGTTCGCCTCTTTTCGAACATCATGCGTGAGCTTCGATGGCCGACGG
GTGTGCGGCTGCCGGGCCGTACGCGATCGGGTACTGCGGCAGCTACTCGA
TCTCCCAGGGCATCATCGTCACCTCCGGTCGCCAGGTCACCGCTCCCTGC
CAACGTCATGGGTAAACTCCGGCACTCACTCGCCTGATGTCCAGCTGCCA
GGGCGCATGCGGGGGGTGTGACTGCTTCGCGAACGCCGCCGTCTTCGATA
CCACCTGGTGGCGACCACAAGCTTGGTCACCGCCGCGGGCTGATGCCGAT
CCTGGACCAGGCTGCGCTTCTGTCGTCAATGTCCATCCAAGGCACCATCA
ACGACGTCTGCCGGAAAGGAACCCCCTCTGGCGGGGGGGGGCGGGAGCAT
TCCGTGTTTGTTCGCCGCAATGCTTGCGAGGCGAGAGGATTTCGACACGG
CCATGAACAAGCAGCGCCCCCCCGACAATACGTCCGACCTCCATCACTGT
TTCGCCAGTGCATTGACGGTGCCCCGGCGCCACAAAGAAGCCCTGAAGTG
GGAGCCCTCCCCCCTATGGCGGGATGCGAGGGACAGGGAGGCTACGGGGC
TGGTCGACGCGGATATGTTTAAAGGAGTGTAACAATCACCGCAAAACTGT
TCCCGCGTGGTGTGGGTGCTTACATGAAAGGCGGACGAGTACGGGTGGCA
AACAAGGACCACGGCGGCACCTCGGCGAGAGGGGACCAACAAAGATCAAA
TCGCGTGATTTGAGAGAGTTTATGCGCCCATCGTTTCTACAACATGCATT
CGGTCCTTGGCAGCAATAGCGTGCGATGTAGGCCCTGATTTTTCATACGT
ATACTTACACATTTATGTGAGTCCAGTTTCTTGCAATACTCCGTATTATT
TTTTGTGTTTCTTTGGGGCATTTTTCAGTTTTTTTTGGTACGCGATTCCG
ACCATGATGCGAACCATCTCGAGGTTGCAACCAGCAGGGTACCCGAAGTA
TGATAGATGCAGGGTCTAGTGTACACTGAGGAGTTGGTATGGCTTCGAGA
GGTAATGTTGGTGCGAACCCCCCAGGATGGGGTTGAGCCGCACGGTAACG
TTTTGTGTCTCTCGGTGTCCACCGAGCAGTCCAGCTTGTCTGACGACAAT
AGACCGCGAGTTATTCACGGTTCCACGACCTCCTAGTCTTCACGCCAAAA
ACCAAGCATCCCTCAAAACGTCTGCCTTGACTCGTTTTGCTCTGCGAGCA
TGTTTTAGCGCACCATTCCGTGAGCAAATACATGGCACGCATAATTTTCT
GTCTGGCATACCCATGGCACAACCTTTCCCTGGGAGTGTTTGCTTCTCGT
GAAATTTGAGTGATTGTAGCTCACTTTCGCTGTACACAATCTTGCATGCA
TCAGCAGGCAACGCTTCAACACCAGGGACGTCGTGACGCTCACGGCTCGA
GCAACTCTCATCGGCGACACAAACCGGCGTACATCGATCCCAGCCCAGGG
TCATTCTCGGCGCCTGTAGCTCGTCTATCCAAATGGCCCAAGAACGTGTA
CTTTGCCAGCGACTTCATCGCCGACAAGGCTGCTGCGGCCACTGCCGCCG
GGGTTAGACGCAGGGCGCCGCGTCGACGGGGCAACAAGGCAAGTGAGACC
GAGCACGGACCGCGGGGAACGCGAGTACGGCATGAACCCGTGACTCGGAT
GAAAATGCCTTCTGCCGCATCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig140:242293..246014+

>mRNA_P-littoralis_Contig140.53.1 ID=mRNA_P-littoralis_Contig140.53.1|Name=mRNA_P-littoralis_Contig140.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig140:242293..246014+ (Pylaiella littoralis U1_48)
ATGCATCCAGCGATGCAGCGGCAGGCAACGCTTCAACACCAGGGACGTCG
TGACGCTCACGGCTCGAGCAACTCTCATCGGCGACACAAACCGGCGTACA
TCGATCCCAGCCCAGGGTCATTCTCGGCGCCTGTAGCTCGTCTATCCAAA
TGGCCCAAGAACGTGTACTTTGCCAGCGACTTCATCGCCGACAAGGCTGC
TGCGGCCACTGCCGCCGGGGTTAGACGCAGGGCGCCGCGTCGACGGGGCA
ACAAGGCAAGTGAGACCGAGCACGGACCGCGGGGAACGCGAGTACGGCAT
GAACCCGTGACTCGGATGAAAATGCCTTCTGCCGCATCC
back to top