mRNA_P-littoralis_Contig140.24.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.24.2
Unique NamemRNA_P-littoralis_Contig140.24.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: D8LEQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ5_ECTSI)

HSP 1 Score: 734 bits (1896), Expect = 5.930e-253
Identity = 456/718 (63.51%), Postives = 515/718 (71.73%), Query Frame = 2
Query:  107 MGKINKRQRKFLSKKVLPHRKKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQKRKTLPEGLDTAAFLECPWLSREACAAAGRDVCVAPFEPDSDLLEDGTQAAPSSRKHGERRGSSTXXXSNLLAEKTARAMIERAADEESIDDLLCVVSALQTAAAVA-----------------------ASTATRTEALSRLHLAFRAHLGPKREE--GTSGEEWEDAVRAHRQQLERAEAWPKLGGPLLSFLTTALDHMEKVEVGTTISDAADAGSTAVGSGKSSSXXXXXXXXXXXXXXXXXXLVGGLTSMQHHVPLLFPFPRLSRRYLAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAVAERVGAGGKGAAAVGKVGVKAGSSGAGAGSLPLLRECLSELFGVEKPSAYLHAYVYIHDLAREALAAAAEVHKGGGNPREAGSALRRLRSWDFLQSLLLWTSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLELLHAREGRPCPTATTAGSPGGGDSSQDGHDGAVASKGTGKKRGXXXXXXXXXXXXXAAVNLSAVAGLGKEDLKLGEVHAAVSREAASLIAREAVCYRWSAGLPELCAGTGARLGLMLDGSCL--TADGGAGKCRARVRALQVSLGKTAAETISRRARGSKHPGEAGPLDTFRSM 2179
            MGK+NKRQRKFLSKKVL HRKKG                            G Q RKTLP+G+DTAAFLECPWLSREACAAAGRD CVAPFEP+  LLE       ++ K G+R G S    S+ L E+ ARAM+ RA DE S+DDLL VV ALQ A   A                       A+ A  +EA SRLHLAFRAHLGP+R+E  G+S EEWEDAVRAHRQ+LE+AEAWP+LGG LLSFLT+ALD +E  E  T+ S A +  + +   G S +                  LV GL  M++HVPLLFPFPRL+RRYLAFLL VL+T+D+TA +SLAFVRLYELSTSQPMPFLHDAFKGSYRCYRA AER+G GG+GA      GV A   GAG+ SLPLLRE  +ELFGVEKPSAYLHAYVYIHDLAREA+ AAAEV KGGG  R+AG ALRRLRSW FLQSL LWTSVV AHPAKSSLGPL+ P+AK LEITFQLSPGLYGAPRTLALAR+AQDLAAA+GVFLPTSHHLVGLLELLHARE RP  TA++A                           XXXXXXXXXXXXX A++LSA+AGLGKEDL++ EV AAVSREAA L+AREAVCYRWSAG+PELCA T ARLG +LDG      ADG AG+ RARV+ALQ SLGK+AAET++RRARGSKHPGEAGP+DTFR M
Sbjct:    1 MGKVNKRQRKFLSKKVLTHRKKGGVRRDNKSKGNGAAAGAATALEASQAP-GAQHRKTLPDGVDTAAFLECPWLSREACAAAGRDACVAPFEPEVALLE-----GAATSKRGKRGGGSKGSGSSSLTEEAARAMVGRAVDERSLDDLLRVVWALQEATTAAGDPSSPALPTTCHQALRAAPGSKAAGALVSEASSRLHLAFRAHLGPERDEEDGSSVEEWEDAVRAHRQKLEKAEAWPRLGGALLSFLTSALDSVE-TEWATSNSVAVEGRADSSKQGSSGATSAS--------------LVDGLDRMRNHVPLLFPFPRLARRYLAFLLDVLQTSDNTAALSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAAAERIG-GGRGA------GVMAKGDGAGS-SLPLLREWFAELFGVEKPSAYLHAYVYIHDLAREAVEAAAEVKKGGGKARDAGPALRRLRSWGFLQSLQLWTSVVTAHPAKSSLGPLVPPLAKALEITFQLSPGLYGAPRTLALARSAQDLAAAAGVFLPTSHHLVGLLELLHAREARPGSTASSAXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALDLSAMAGLGKEDLRVVEVRAAVSREAAGLVAREAVCYRWSAGMPELCASTRARLGRLLDGGDGGGXADGAAGRWRARVKALQTSLGKSAAETMARRARGSKHPGEAGPVDTFRGM 683          
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: A0A6H5KR85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR85_9PHAE)

HSP 1 Score: 676 bits (1744), Expect = 1.760e-229
Identity = 427/661 (64.60%), Postives = 482/661 (72.92%), Query Frame = 2
Query:  107 MGKINKRQRKFLSKKVLPHRKKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQKRKTLPEGLDTAAFLECPWLSREACAAAGRDVCVAPFEPDSDLLEDGTQAAPSSRKHGERRGSSTXXXSNLLAEKTARAMIERAADEESIDDLLCVVSALQ-----TAAAVA--------------ASTATRTEALSRLHLAFRAHLGPKREE--GTSGEEWEDAVRAHRQQLERAEAWPKLGGPLLSFLTTALDHMEKVEVGTTISDAAD--AGSTAVGSGKSSSXXXXXXXXXXXXXXXXXXLVGGLTSMQHHVPLLFPFPRLSRRYLAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAVAERVGAGGKGAAAVGKVGVKAGSSGAGAGSLPLLRECLSELFGVEKPSAYLHAYVYIHDLAREALAAAAEVHKGGGNPREAGSALRRLRSWDFLQSLLLWTSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLELLHAREGRPCPTATTAGSPGGGDSSQDGHDGAVASKGTGKKRGXXXXXXXXXXXXXAAVNLSAVAGLGKEDLKLGEVHAAVSREAASLIAREAVCYRWSAGLPELCAGTGARLGLMLDG 2020
            MGK+NKRQRKFLSKKVL HRKKG                            G Q RKTLP+G+DTAAFLECPWLS EACA AGRD CVAPFEP++ LLE    A+PS  K G++ G      S+ L E+ ARAMI RA DE S+DDLL VV ALQ     ++AAV               A+ A  +EA SRLHLAFRAHL P R+E  G+S EEWED VRAHRQ+LE+AEAWP+LGG LLSFLT+ALD +E  E  T+IS A +  A S+  GS  ++S                  L  GL  M++HVPLLFPFPRL+RRYL+FLL VL+T+D TA +SLAFVRLYELSTSQPMPFLHDAFKGSYRCYRA AER+G GG+GA       V A   GAG+ SLPLLRECL+ELFGVEKPSAYLHAYVYIH+LAREA+ AAAEV KGGG  REAG ALRRLRSW FLQSL LWTSVV AHPAKSSLGPL+ P+AK LEITFQLSPGLYGAPRTLALAR+AQDLAAA+GVFLPTSH+LVGLLELLHARE RP  TA +AG P   D  + G  G   + G      XXXXXXXXXXXXXAA++LSA+AGLGKEDL++ EV AAVSREAA LIAREAVCYRWSAG+PELCA TGARLG +LDG
Sbjct:    1 MGKVNKRQRKFLSKKVLTHRKKGGVRRDNKSKGKGVGGAAATAPEASQAP-GAQHRKTLPDGVDTAAFLECPWLSPEACANAGRDACVAPFEPEAALLEG---ASPS--KSGKQGGGGEGSVSSSLTEQAARAMIGRAVDERSLDDLLRVVWALQAIGDPSSAAVPTTSHQPLRAAPGSKAADALISEASSRLHLAFRAHLEPDRDEEDGSSVEEWEDTVRAHRQKLEKAEAWPRLGGALLSFLTSALDCVE-TEWATSISVAVEGCADSSKQGSSAATSAS----------------LEDGLDRMRNHVPLLFPFPRLARRYLSFLLAVLQTSDSTAALSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAAAERIG-GGRGAR------VMARGEGAGS-SLPLLRECLAELFGVEKPSAYLHAYVYIHELAREAVGAAAEVKKGGGMAREAGPALRRLRSWGFLQSLQLWTSVVTAHPAKSSLGPLVPPLAKALEITFQLSPGLYGAPRTLALARSAQDLAAAAGVFLPTSHYLVGLLELLHAREARPGATAPSAGGPA--DGEEAGPGGLTVASGX----XXXXXXXXXXXXXXAALDLSAMAGLGKEDLRVAEVRAAVSREAAGLIAREAVCYRWSAGMPELCASTGARLGRLLDG 624          
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: A0A835ZBW6_9STRA (Noc2p family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.680e-17
Identity = 156/551 (28.31%), Postives = 211/551 (38.29%), Query Frame = 2
Query:  635 AFRAHLGPKRE-----EGTSGEEWEDAVRA--------HRQQLERAEAWPKLGGPLLSFLTTALDHMEKVEVGTTISDAADAGSTAVGSGKSSSXXXXXXXXXXXXXXXXXXLVGGLTSMQHHVPLLFPFPRLSRRYLAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAVAERVGAGGKGAAAVGKVGVKAGSSGAGA------GSLPLLRECLSELFGVEKPSAYLHAYVYIHDLAREALAAAAEVHKGGGNPREAGSALRRLRSWDFLQSLLLWTSVVAAHPAKSS----------LGPLIAPVAKTLEITFQLS-------PGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLELLHAREGRPCPTATTAGSPGGGDSSQDGHDGAVASKGTGKKRGXXXXXXXXXXXXXAAVNLSAVAGLGKEDLKLGEVHAAVSREAASLIAREAVCYRWSAGLPELCAGTGARL--GLMLDGSCLTADGGAGKCRARVRALQVSLGKTAAETISRRARGSKHPGEAGPLDTFR 2173
            AF A L P+ +     +G  GE     VRA           ++ R+EAWP+L G L +FL  A  H         +  AA A +  V                                      L+ PFP L+R  L                          + SQP+P  H A + +YR YR   ER+                 GSSG          ++  LR  ++EL+  E  ++ LHA+V++H      +AA  E  + GG   EA +    +RSW FLQ +LLWT VVAA  +                  AP+                  PG    P  LALARAAQDLAAA+GVFLP +   +G LE+                            D   A +       XXXXXXXXXXXXX A  L+AVA L +++L+      A+  EAA+L+AREA  Y  S   P+  AG  AR                      A +RA   ++ + A +    R+R S HP     L+  R
Sbjct:  218 AFAAQLLPQADAAAAADGGDGEAAAAGVRAASRSAFLQRHAKMPRSEAWPRLAGALRAFLEAA-PHA--------LLSAAGAATAEV-------------------------XXXXXXXXXXXXXLMIPFPELARAALRSAADXXXXXXXXXXXXXXXXXXXXXALSQPLPLFHTALRAAYRAYRLAVERLD----------------GSSGXXXXXXXXXATMAALRTGVAELYRHEPAASQLHAFVFLHT-----MAATVEAAEEGGKAGEAATV--EVRSWPFLQCVLLWTRVVAAGCSSGGGXXXXXXXXXXXXXXAPMXXXXXXXXXXXXXXXXXXPGAPSLPHRLALARAAQDLAAAAGVFLPAAWMAMGALEV----------------------------DSLYAVRSAAXXXXXXXXXXXXXXXXXFA--LAAVARLSRDELRDAAAQRALLAEAAALLAREAALYAQSPAHPDY-AGRCARALTAAAAXXXXXXXXXXXADVAAAMRAAAEAIERRARDVERARSRLSTHPANVTALEALR 680          
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: A0A1V9Z026_9STRA (Nucleolar complex protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z026_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.530e-13
Identity = 65/241 (26.97%), Postives = 110/241 (45.64%), Query Frame = 2
Query:  944 LTSMQHHVPLLFPFPRLSRRYLAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAVAERVGAGGKGAAAVGKVGVKAGSSGAGAGSLPLLRECLSELFGVEKPSAYLHAYVYIHDLAREALAAAAEVHKGGGNPREAGSALRRLRSWDFLQSLLLWTSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLEL 1666
            L  +  ++  + P  + +R+ L   + +   + DT    LAFVR+ EL+T  P PFL    K  Y  Y   A+                    ++G       ++  C+ EL+G++  S+Y H ++YI  LA         + K   +P  +   L+ L +W F+  L +W +VVAA+P +S L  L+ P+++      +L+  L   P      +  Q LA A+  F+PTS  L+ +L L
Sbjct:  268 LRGLSTYMRFVVPCHKTARKMLKCYVSLWGKSLDTQVCLLAFVRVRELATLMPFPFLELCLKALYLSYMRNAKF-------------------TNGVNFQHHIVMGNCVVELYGLDLVSSYQHVFIYIRQLA-------IAIRKAIASP--SADTLKGLLTWRFVNCLKVWAAVVAAYPEESQLKALVYPISQLCFALMRLASVLRYVPLRFQCVKILQQLAFATNTFIPTSPVLLDILAL 480          
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: A0A7J6EEJ2_CANSA (Uncharacterized protein (Fragment) n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6EEJ2_CANSA)

HSP 1 Score: 80.5 bits (197), Expect = 1.090e-11
Identity = 69/244 (28.28%), Postives = 107/244 (43.85%), Query Frame = 2
Query:  944 LTSMQHHVPLLFPFPRLSRRYLAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAVAERVGAGGKGAAAVGKVGVKAGSSGAGAGSLPLLRECLSELFGVEKPSAYLHAYVYIHDLA---REALAAAAEVHKGGGNPREAGSALRRLRSWDFLQSLLLWTSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLEL 1666
            L  +++    L  FP L R+Y+   L    T      V ++F+ L +L        L + FKG Y+ Y    + V A                   A    +  L+ C+ ELFGV+ P+AY HA+++I  LA   REAL           N R    A R++  W F+  L LWT  +  +  +S L PL  P+++ +    +L P     P  L   R    +A+A+  F+P S  L+ +LE+
Sbjct:  278 LRRLKYSSVFLAAFPSLLRKYIKIALHFWGTGGGALPV-VSFLFLRDLCIRLGSDCLDECFKGIYKAYVLNCQFVNA-------------------AKLQHIQFLQNCIIELFGVDLPTAYQHAFIFIRQLAMVLREAL-----------NTRTK-EAFRKVYEWKFMSCLELWTGCICTYGKESDLKPLAYPLSQIIAGVARLVPTARYFPLRLRCVRMLNQIASATDTFIPVSMLLLDMLEM 489          
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: A0A7J6HEM0_CANSA (Uncharacterized protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6HEM0_CANSA)

HSP 1 Score: 80.5 bits (197), Expect = 1.130e-11
Identity = 69/244 (28.28%), Postives = 107/244 (43.85%), Query Frame = 2
Query:  944 LTSMQHHVPLLFPFPRLSRRYLAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAVAERVGAGGKGAAAVGKVGVKAGSSGAGAGSLPLLRECLSELFGVEKPSAYLHAYVYIHDLA---REALAAAAEVHKGGGNPREAGSALRRLRSWDFLQSLLLWTSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLEL 1666
            L  +++    L  FP L R+Y+   L    T      V ++F+ L +L        L + FKG Y+ Y    + V A                   A    +  L+ C+ ELFGV+ P+AY HA+++I  LA   REAL           N R    A R++  W F+  L LWT  +  +  +S L PL  P+++ +    +L P     P  L   R    +A+A+  F+P S  L+ +LE+
Sbjct:  324 LRRLKYSSVFLAAFPSLLRKYIKIALHFWGTGGGALPV-VSFLFLRDLCIRLGSDCLDECFKGIYKAYVLNCQFVNA-------------------AKLQHIQFLQNCIIELFGVDLPTAYQHAFIFIRQLAMVLREAL-----------NTRTK-EAFRKVYEWKFMSCLELWTGCICTYGKESDLKPLAYPLSQIIAGVARLVPTARYFPLRLRCVRMLNQIASATDTFIPVSMLLLDMLEM 535          
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: A0A1V9ZBH9_9STRA (Nucleolar complex protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBH9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.740e-11
Identity = 61/241 (25.31%), Postives = 111/241 (46.06%), Query Frame = 2
Query:  944 LTSMQHHVPLLFPFPRLSRRYLAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAVAERVGAGGKGAAAVGKVGVKAGSSGAGAGSLPLLRECLSELFGVEKPSAYLHAYVYIHDLAREALAAAAEVHKGGGNPREAGSALRRLRSWDFLQSLLLWTSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLEL 1666
            L  +  ++  + P  + +R+ L   +++   + DT    LAFVR+ +LST  P PFL    K  Y  Y   A+                    ++G       ++  C+ EL+G++  S+Y H ++YI  LA         + K   +P  +   L+ L +W F+  L +W +VV+A+P ++ L  L+ P+++      +L+  +   P      +  Q LA A+  F+PT+  L+ +L L
Sbjct:  258 LRGLNKYMRFVVPCHKTARKLLKCFVQLWGKSLDTQVCMLAFVRVRDLSTLMPFPFLELCLKAIYLSYMRNAKF-------------------TNGVNFQHHIVMGNCVVELYGLDLVSSYQHVFIYIRQLA-------IAIRKAIASP--STETLKGLLTWRFVNCLKVWAAVVSAYPEENQLKALVYPISQLCFALMRLASVVRYIPLRFQCIKILQQLAFATNTFIPTAPVLLDVLNL 470          
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: A0A5P1E5B6_ASPOF (Uncharacterized protein n=6 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E5B6_ASPOF)

HSP 1 Score: 79.7 bits (195), Expect = 1.870e-11
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 2
Query: 1256 LRECLSELFGVEKPSAYLHAYVYIHDLA---REALAAAAE--VHKGGGNPREAGS---------ALRRLRSWDFLQSLLLWTSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLEL--LHAR 1678
            L  C++EL+GV+ PSAY HA+V+I  LA   R AL    +  V +     +  GS         A +++  W F+  L LWT V+ A+ +++  GPL  P+A+ +     L P     P  L   +    LA A+G ++P S HL+ +LE+  LH R
Sbjct:  323 LGNCVTELYGVDVPSAYQHAFVFIRQLAVILRGALTVRGDKVVKEKKDKKQRDGSKSSRKQLDKAYQKVYDWQFISCLELWTGVICAYNSEAEFGPLAYPLAQIISGVASLVPTARYIPLRLRCMKMLNRLAGATGTYIPVSSHLLDMLEMKELHKR 479          
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: A0A834FZ06_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FZ06_RHOSS)

HSP 1 Score: 79.0 bits (193), Expect = 3.260e-11
Identity = 62/231 (26.84%), Postives = 104/231 (45.02%), Query Frame = 2
Query:  983 FPRLSRRYLAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAVAERVGAGGKGAAAVGKVGVKAGSSGAGAGSLPLLRECLSELFGVEKPSAYLHAYVYIHDLA---REALAAAAEVHKGGGNPREAGSALRRLRSWDFLQSLLLWTSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLEL 1666
            FP L RRY+  ++    T      V ++F+ + ++        L + F+G Y+ Y    + V A                   +    +  L  C++ELFGV+ P+AY HA+V+I  LA   R+AL              +   A R++  W ++  L LWT  + A+ +++   PL  P+ + +    +L P     P  L  AR    +AA+SG F+P S  L+ +LE+
Sbjct:  282 FPSLLRRYIKVVIHFWGTGGGALPV-VSFLFIRDICIRLGSDCLDECFRGIYKAYVLSCQFVNA-------------------SKLQHIHFLGNCVTELFGVDLPAAYQHAFVFIRQLATILRDALT------------MKTKEAFRKVYEWKYMNCLELWTGAICAYSSEADFQPLAYPLTQIISGVARLVPTARYFPLRLRCARMLNRIAASSGTFIPVSLLLLDMLEM 480          
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Match: A0A834ZC74_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZC74_9MAGN)

HSP 1 Score: 78.6 bits (192), Expect = 4.840e-11
Identity = 67/253 (26.48%), Postives = 110/253 (43.48%), Query Frame = 2
Query:  944 LTSMQHHVPLLFPFPRLSRRYLAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAVAERVGAGGKGAAAVGKVGVKAGSSGAGAGSLPLLRECLSELFGVEKPSAYLHAYVYIHDLA---REALAAAAEVHKGGGNP---------REAGSALRRLRSWDFLQSLLLWTSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDLAAASGVFLPTSHHLVGLLEL 1666
            L  +++    L  FP L R+Y+   L    T      V ++F+ + +L        L + FKG Y+ Y    + V A                        +  L  C+ EL+GV+ P+AY HA+++I  LA   REAL    +V  G  +          R    A R++  W F+  L LWT  + A+ +++   PL  P+ + +    +L P     P  L  AR    +AA++G F+P S  L+ +L++
Sbjct:  415 LRRLRYSAIFLAAFPSLLRKYIKVTLHFWGTGGGALPV-VSFLFIRDLCIRLGSDCLDECFKGIYKAYVLSCQFVNA-------------------TKLQHIQFLGNCVIELYGVDLPTAYQHAFIFIRQLAMILREALNMKTKVSDGHNSTHSLLCLIPDRAFQEAFRKVYEWKFMNCLELWTGAICAYGSEADFRPLAYPLIQIISGVARLVPTARYFPLRLRCARMLNRIAASTGSFIPVSLLLLDMLDM 647          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.24.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEQ5_ECTSI5.930e-25363.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR85_9PHAE1.760e-22964.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZBW6_9STRA5.680e-1728.31Noc2p family-domain-containing protein n=1 Tax=Tri... [more]
A0A1V9Z026_9STRA8.530e-1326.97Nucleolar complex protein n=1 Tax=Achlya hypogyna ... [more]
A0A7J6EEJ2_CANSA1.090e-1128.28Uncharacterized protein (Fragment) n=1 Tax=Cannabi... [more]
A0A7J6HEM0_CANSA1.130e-1128.28Uncharacterized protein n=3 Tax=Cannabis sativa Ta... [more]
A0A1V9ZBH9_9STRA1.740e-1125.31Nucleolar complex protein n=1 Tax=Thraustotheca cl... [more]
A0A5P1E5B6_ASPOF1.870e-1133.76Uncharacterized protein n=6 Tax=Asparagus officina... [more]
A0A834FZ06_RHOSS3.260e-1126.84Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
A0A834ZC74_9MAGN4.840e-1126.48Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:87932..92215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEQ5
PFAMsNoc2
Model size2956
Max annot lvl2759|Eukaryota
KEGG koko:K14833
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0030691,GO:0031974,GO:0031981,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:1990904
Exons4
Evalue8.27e-258
EggNOG OGsCOG5604@1|root,KOG2256@2759|Eukaryota
Ec32 ortholog descriptionNucleolar complex protein 2
Ec32 orthologEc-26_000730.1
Descriptionribosomal large subunit biogenesis
Cds size2169
COG categoryL
BRITEko00000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.24.2prot_P-littoralis_Contig140.24.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 88038..91534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789654.2778566-UTR-P-littoralis_Contig140:87931..880371680789654.2778566-UTR-P-littoralis_Contig140:87931..88037Pylaiella littoralis U1_48UTRP-littoralis_Contig140 87932..88037 +
1680789654.3438542-UTR-P-littoralis_Contig140:91534..922151680789654.3438542-UTR-P-littoralis_Contig140:91534..92215Pylaiella littoralis U1_48UTRP-littoralis_Contig140 91535..92215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789654.2906933-CDS-P-littoralis_Contig140:88037..892401680789654.2906933-CDS-P-littoralis_Contig140:88037..89240Pylaiella littoralis U1_48CDSP-littoralis_Contig140 88038..89240 +
1680789654.3047934-CDS-P-littoralis_Contig140:89636..897771680789654.3047934-CDS-P-littoralis_Contig140:89636..89777Pylaiella littoralis U1_48CDSP-littoralis_Contig140 89637..89777 +
1680789654.3155644-CDS-P-littoralis_Contig140:90025..900971680789654.3155644-CDS-P-littoralis_Contig140:90025..90097Pylaiella littoralis U1_48CDSP-littoralis_Contig140 90026..90097 +
1680789654.3317223-CDS-P-littoralis_Contig140:90781..915341680789654.3317223-CDS-P-littoralis_Contig140:90781..91534Pylaiella littoralis U1_48CDSP-littoralis_Contig140 90782..91534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.24.2

>prot_P-littoralis_Contig140.24.2 ID=prot_P-littoralis_Contig140.24.2|Name=mRNA_P-littoralis_Contig140.24.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=723bp
MGKINKRQRKFLSKKVLPHRKKGGVRRDDNKKSKGNNSKGGQEDASAGAA
AGEQKRKTLPEGLDTAAFLECPWLSREACAAAGRDVCVAPFEPDSDLLED
GTQAAPSSRKHGERRGSSTTSSSNLLAEKTARAMIERAADEESIDDLLCV
VSALQTAAAVAASTATRTEALSRLHLAFRAHLGPKREEGTSGEEWEDAVR
AHRQQLERAEAWPKLGGPLLSFLTTALDHMEKVEVGTTISDAADAGSTAV
GSGKSSSSGKQNGSDTAAAAAAAAALVGGLTSMQHHVPLLFPFPRLSRRY
LAFLLRVLETTDDTATVSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAV
AERVGAGGKGAAAVGKVGVKAGSSGAGAGSLPLLRECLSELFGVEKPSAY
LHAYVYIHDLAREALAAAAEVHKGGGNPREAGSALRRLRSWDFLQSLLLW
TSVVAAHPAKSSLGPLIAPVAKTLEITFQLSPGLYGAPRTLALARAAQDL
AAASGVFLPTSHHLVGLLELLHAREGRPCPTATTAGSPGGGDSSQDGHDG
AVASKGTGKKRGRGGGGGEGAATTTAAVNLSAVAGLGKEDLKLGEVHAAV
SREAASLIAREAVCYRWSAGLPELCAGTGARLGLMLDGSCLTADGGAGKC
RARVRALQVSLGKTAAETISRRARGSKHPGEAGPLDTFRSMVREFCMDVC
SWICFVFFMSCGLIPPHMCWSL*
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mRNA from alignment at P-littoralis_Contig140:87932..92215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.24.2 ID=mRNA_P-littoralis_Contig140.24.2|Name=mRNA_P-littoralis_Contig140.24.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4284bp|location=Sequence derived from alignment at P-littoralis_Contig140:87932..92215+ (Pylaiella littoralis U1_48)
CGCAGCAGCACACAGCACACAGCACACAGCACGCGCAGAATACCCTTGTC GCTGCGTGGCGTGGCACACCCCACCGCGGACGTCCGGACGCGAACGTCAA ATCATCATGGGGAAGATCAACAAGCGCCAACGCAAGTTCCTGAGCAAGAA GGTATTGCCACACAGGAAGAAGGGCGGCGTGCGGCGCGACGACAACAAAA AGTCAAAGGGCAACAACAGCAAGGGGGGCCAGGAGGATGCCTCGGCAGGA GCAGCAGCCGGCGAGCAAAAGCGCAAGACTCTACCCGAAGGCCTCGATAC CGCCGCGTTCCTTGAATGTCCGTGGCTAAGTCGGGAAGCCTGTGCTGCCG CCGGGCGAGACGTCTGCGTGGCCCCCTTCGAGCCAGACTCAGACTTGCTC GAGGATGGTACTCAGGCGGCACCGAGCAGCAGGAAGCACGGCGAAAGGCG CGGCAGCAGTACCACCAGCAGCAGCAACTTGCTCGCGGAGAAGACAGCGC GGGCCATGATCGAACGAGCCGCGGACGAAGAATCGATCGACGACCTCCTT TGCGTGGTATCGGCCTTGCAGACAGCAGCAGCAGTAGCAGCATCGACAGC AACCCGCACCGAGGCCTTGTCTCGGCTACACCTGGCGTTTCGGGCCCACC TGGGGCCCAAGCGCGAGGAGGGAACGTCGGGGGAAGAGTGGGAGGACGCG GTCAGGGCGCACCGGCAGCAGCTGGAGAGGGCGGAGGCCTGGCCAAAGCT GGGCGGGCCGTTGCTGAGCTTCCTGACGACGGCGTTGGATCACATGGAAA AGGTTGAAGTCGGAACAACCATCTCCGATGCGGCTGATGCTGGCTCTACA GCAGTGGGCAGTGGCAAGAGCAGCAGCAGCGGGAAGCAGAACGGCTCAGA TACGGCTGCCGCCGCCGCCGCTGCTGCCGCTCTAGTGGGGGGCCTGACCA GCATGCAGCACCACGTCCCGCTGCTCTTCCCGTTCCCGCGGCTCTCCCGT CGGTACCTGGCCTTCCTCCTTCGCGTGCTCGAGACTACCGACGACACCGC CACAGTGTCCCTAGCCTTTGTCCGGCTGTACGAGCTGTCCACCTCCCAGC CGATGCCGTTCTTGCACGACGCCTTCAAGGGGTCCTACCGGTGCTACCGC GCGGTGGCGGAGCGTGTCGGAGCAGGAGGAAAAGGGGCGGCGGCGGTGGG GAAGGTCGGCGTGAAGGCGGGGAGCAGCGGCGCTGGCGCCGGGTCTTTGC CGTTGTTGAGGGAGTGCTTGTCTGAGCTCTTCGGGGTTGAAAAGCCGTCT GCCTATCTGGTAAGAACCTCTCGTTTTTGATTTGTTTGCGGTGGGCGGTG AGCCGATGGGTGTATAGTACAAGTATTGCAAGAACATCTTTCGAAGACAA TCATGCTACCACTTTTTTACGTTGCTCAAGCCTGTTAGTAGAGTTGCAAG CATGCTTGTCCCTTTCGTATTGTACCGCAGTAACTGCTTAGTCGACCGTT GGGAATGCCACACTCGTATGTTTTTCCCACCGTGAACATCAGCATGCTGA GACAACGTGCTCATGATTCTCAAGGCCTTGCCCGAAAGCCCCTCTACATG TGTACACTAGACTCCCAAGGAAGTCATGCTCGAGTTGAACGTGTGCCAAC CCCTACCCCCCCGAATCGCCGGAACACATACTGTCCCCGTCCCCCCATCC ATCAGCACGCCTACGTATACATCCACGACCTCGCCCGTGAGGCCCTGGCA GCTGCGGCGGAGGTGCACAAAGGCGGTGGGAACCCTAGGGAGGCGGGATC AGCCCTGAGGAGGTTGCGCTCTTGGGACTTCCTCCAGAGCTTGCTGGTAG GGAAGCGAGAGATAGGGTTTATTTGTAGATTTGCGGTTGTGGCTTTCGCC AATGGTTTTCCTCATGTCTTGTCTTTGGGAGCCAGACCATACCACGCGCT GGCCTACAATTGGACGCATTTTCCCCTGGCTCCACGCGGTACGCCTGTCC TCACCCCGACCCTCCGTTTACGCTGCTGCTGCTCTTGCCTGCGTTCGTCC GCATGGGCTACGGAAACCGCCACCGCGACTCTACTCGCGGTTAGCTCTGG ACCAGCGTGGTGGCGGCGCACCCCGCAAAGTCTTCTCTCGGCCCCCTGAT TGCTCCTGTCGCCAAGGTGAGGTCGGTTCGATTTTTTGTCAATTCCTCGT TGCTTACTGCACCACGGTCCCGCCGCACTGTCATGCTCGATTTGTTGCCA AGCTTGATGCACTGAGTGTGCAGGAGCACAGGCGGCGTCGTTGGGTGGCC CGTGTGGCTTTTTTCCATGGAGCTCTATCCGTACAGCAGTATTGTGCTTC TTGTTTTGTGTGTCAGACGAGAGGGTTCCTGAACCTTTTCCATTTGTATC AGTTGCGGAGATAGAGGAAGGATCGGTAAAAAAATCCTGCCTCGGCTGGG ATGAGGGCTCGTTAGGTAGGCGCAACGAGTCGAAGATGTTTTCTTCCAGG CACTCCGCCAGAGGCACCCCGCCGGAGGCTTGGATCTGATCGCTTCTGAC TCCTTTTCATCTGGTTTCGATTCTGGCGGAGCGTGTCCACCACGACCGAT ACCTTTTGTTCAGCGTAGTTTATGAGTTTCTTATTGGTCCAAACATTGGA AGACCAGGCGAACCATTACACCGCCAATAGCAACACGCCATAATATACCG GAGTTATTGTAGTGTACTGCTCCACAGCAGGCACGAAACACCCCCCCCCC CCACCTCCCAGGCTTGTATCCACACCATTGAACCCCCTACCCACAATGGT AAGGCCCCCACCCCTCACCCTAACGCTGGTGTAATCCCATGCCATGCCAG ACGTTGGAAATCACCTTCCAGTTGTCTCCCGGCCTTTACGGCGCCCCCCG CACCCTGGCCCTGGCCCGTGCGGCGCAAGACCTAGCGGCGGCCTCCGGCG TGTTCCTGCCGACTTCTCACCACCTCGTGGGCTTGCTGGAGCTGCTGCAC GCTCGTGAAGGCCGGCCTTGCCCCACCGCCACCACCGCTGGAAGCCCCGG AGGCGGGGATTCATCCCAAGATGGACACGACGGGGCGGTGGCTAGCAAGG GCACCGGCAAGAAGCGCGGACGGGGGGGAGGTGGAGGTGAAGGTGCGGCG ACGACGACGGCGGCGGTGAACTTGTCCGCGGTTGCCGGTCTGGGCAAAGA AGACCTCAAGTTGGGCGAGGTGCACGCGGCCGTCTCAAGAGAGGCCGCGA GTTTGATCGCCAGGGAGGCGGTGTGCTACCGCTGGAGCGCGGGGCTTCCG GAGCTGTGCGCGGGTACGGGGGCCCGACTCGGCCTGATGTTGGACGGTAG CTGTTTGACTGCAGACGGCGGGGCGGGGAAGTGCAGGGCGAGGGTGCGTG CGCTGCAGGTGTCCCTGGGAAAAACGGCGGCGGAGACTATCTCGAGGAGG GCGAGAGGGAGTAAGCACCCCGGGGAGGCTGGCCCGTTAGACACGTTCAG GAGCATGGTACGGGAGTTTTGTATGGATGTTTGTAGTTGGATTTGTTTTG TTTTTTTCATGTCGTGTGGTTTAATTCCCCCTCACATGTGTTGGTCCCTG TAGGAATTGAAAAACAAATGTCTTCAAAATGGCAGGCGTGTTGTTTTCGC GGGTAGTACAATTGTTCAGCCCCCCCCTGTGAAACCCGCCGATAATCGCG AGAGGCCTGCGCAGAGTAACCACCATCACCACCTCCAAGCTCTGCGCCAA GGGCAGGAACCAGCGCGAAATAAGAGGAAGGGCTAGAGCGAGGGTCATTA TCTTGGCGTTTGTGTGAATTGCGGGCGCTGAGATTGATGGTAGGGCTGAC ATTGGTTGCGCTGCCGGTGTGGAGTTGGGAGGTCACGTCAACACCCCGGC AGTTGCACCGCAAGGCTTGAGGGACATCTTTGCGCCAAAGGCCCCAGAGC AATACTTGACCAAACACGGCCAAACTTTGGCGGTGTTGGCTGACACAAGG ATAGATGGGCGTGGAGGGGTGCCGAGTTACGTAGGGATCTGTACTACAGC AGTAGAAAACGATGATTGCAACAAAATGGCCGAAATCGCCCGTATCTACT TGGCTACAGAGAGGGTTGAGAGCTGTGGTCTACAGCTGTACAAAACCATA TCATACGAGAGCACGTACGTAAGTACTTCAAGTGATAATTTGAAAAGTGT ATTGGAACTGGGTCCATTGTAGCCTGGGACCACACCTACACGAACTTTGG CGCGAAGGCCCCAGTGCAAGAAGCTACGAACAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:87932..92215+

>mRNA_P-littoralis_Contig140.24.2 ID=mRNA_P-littoralis_Contig140.24.2|Name=mRNA_P-littoralis_Contig140.24.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2169bp|location=Sequence derived from alignment at P-littoralis_Contig140:87932..92215+ (Pylaiella littoralis U1_48)
ATGGGGAAGATCAACAAGCGCCAACGCAAGTTCCTGAGCAAGAAGGTATT
GCCACACAGGAAGAAGGGCGGCGTGCGGCGCGACGACAACAAAAAGTCAA
AGGGCAACAACAGCAAGGGGGGCCAGGAGGATGCCTCGGCAGGAGCAGCA
GCCGGCGAGCAAAAGCGCAAGACTCTACCCGAAGGCCTCGATACCGCCGC
GTTCCTTGAATGTCCGTGGCTAAGTCGGGAAGCCTGTGCTGCCGCCGGGC
GAGACGTCTGCGTGGCCCCCTTCGAGCCAGACTCAGACTTGCTCGAGGAT
GGTACTCAGGCGGCACCGAGCAGCAGGAAGCACGGCGAAAGGCGCGGCAG
CAGTACCACCAGCAGCAGCAACTTGCTCGCGGAGAAGACAGCGCGGGCCA
TGATCGAACGAGCCGCGGACGAAGAATCGATCGACGACCTCCTTTGCGTG
GTATCGGCCTTGCAGACAGCAGCAGCAGTAGCAGCATCGACAGCAACCCG
CACCGAGGCCTTGTCTCGGCTACACCTGGCGTTTCGGGCCCACCTGGGGC
CCAAGCGCGAGGAGGGAACGTCGGGGGAAGAGTGGGAGGACGCGGTCAGG
GCGCACCGGCAGCAGCTGGAGAGGGCGGAGGCCTGGCCAAAGCTGGGCGG
GCCGTTGCTGAGCTTCCTGACGACGGCGTTGGATCACATGGAAAAGGTTG
AAGTCGGAACAACCATCTCCGATGCGGCTGATGCTGGCTCTACAGCAGTG
GGCAGTGGCAAGAGCAGCAGCAGCGGGAAGCAGAACGGCTCAGATACGGC
TGCCGCCGCCGCCGCTGCTGCCGCTCTAGTGGGGGGCCTGACCAGCATGC
AGCACCACGTCCCGCTGCTCTTCCCGTTCCCGCGGCTCTCCCGTCGGTAC
CTGGCCTTCCTCCTTCGCGTGCTCGAGACTACCGACGACACCGCCACAGT
GTCCCTAGCCTTTGTCCGGCTGTACGAGCTGTCCACCTCCCAGCCGATGC
CGTTCTTGCACGACGCCTTCAAGGGGTCCTACCGGTGCTACCGCGCGGTG
GCGGAGCGTGTCGGAGCAGGAGGAAAAGGGGCGGCGGCGGTGGGGAAGGT
CGGCGTGAAGGCGGGGAGCAGCGGCGCTGGCGCCGGGTCTTTGCCGTTGT
TGAGGGAGTGCTTGTCTGAGCTCTTCGGGGTTGAAAAGCCGTCTGCCTAT
CTGCACGCCTACGTATACATCCACGACCTCGCCCGTGAGGCCCTGGCAGC
TGCGGCGGAGGTGCACAAAGGCGGTGGGAACCCTAGGGAGGCGGGATCAG
CCCTGAGGAGGTTGCGCTCTTGGGACTTCCTCCAGAGCTTGCTGCTCTGG
ACCAGCGTGGTGGCGGCGCACCCCGCAAAGTCTTCTCTCGGCCCCCTGAT
TGCTCCTGTCGCCAAGACGTTGGAAATCACCTTCCAGTTGTCTCCCGGCC
TTTACGGCGCCCCCCGCACCCTGGCCCTGGCCCGTGCGGCGCAAGACCTA
GCGGCGGCCTCCGGCGTGTTCCTGCCGACTTCTCACCACCTCGTGGGCTT
GCTGGAGCTGCTGCACGCTCGTGAAGGCCGGCCTTGCCCCACCGCCACCA
CCGCTGGAAGCCCCGGAGGCGGGGATTCATCCCAAGATGGACACGACGGG
GCGGTGGCTAGCAAGGGCACCGGCAAGAAGCGCGGACGGGGGGGAGGTGG
AGGTGAAGGTGCGGCGACGACGACGGCGGCGGTGAACTTGTCCGCGGTTG
CCGGTCTGGGCAAAGAAGACCTCAAGTTGGGCGAGGTGCACGCGGCCGTC
TCAAGAGAGGCCGCGAGTTTGATCGCCAGGGAGGCGGTGTGCTACCGCTG
GAGCGCGGGGCTTCCGGAGCTGTGCGCGGGTACGGGGGCCCGACTCGGCC
TGATGTTGGACGGTAGCTGTTTGACTGCAGACGGCGGGGCGGGGAAGTGC
AGGGCGAGGGTGCGTGCGCTGCAGGTGTCCCTGGGAAAAACGGCGGCGGA
GACTATCTCGAGGAGGGCGAGAGGGAGTAAGCACCCCGGGGAGGCTGGCC
CGTTAGACACGTTCAGGAGCATGGTACGGGAGTTTTGTATGGATGTTTGT
AGTTGGATTTGTTTTGTTTTTTTCATGTCGTGTGGTTTAATTCCCCCTCA
CATGTGTTGGTCCCTGTAG
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