mRNA_P-littoralis_Contig140.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.14.1
Unique NamemRNA_P-littoralis_Contig140.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 336 bits (861), Expect = 7.430e-113
Identity = 158/248 (63.71%), Postives = 196/248 (79.03%), Query Frame = 1
Query:   28 VLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
            VL   +T+ EALRVLTP    +V + RP + SW   GA  DDRFE+DLHYCGSYSFCF    DCGF IAN+C N+ D ACM Q++ SSQV FPEP+ G SN+GYRVRISEVG++ FRCS+DFYL++SAD    GEPGGPT+EV+AP+AN++A+AGE YTVEF YDNGFG  +GRF IDLY+A+G GDCG++VTS+CDKP MGC D++GDYD+VIP D+  GMYKIRVGLFG D +Y CS +FE+  ++
Sbjct:   14 VLGNTITSTEALRVLTPAVAESVASGRPYVVSW--QGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVC-NEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTN 258          
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 7.900e-113
Identity = 166/263 (63.12%), Postives = 207/263 (78.71%), Query Frame = 1
Query:    4 STAAASVAVLTGML-----TAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEA---QGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRS 768
            S++ AS+  L G+L     T+ EAL+VLTP    TVV+ RP + SW  +GAS DDRFEIDLHYCGSYS+CFE + +CGF +AN+C+    S CMSQ + SSQV FPEP+ G SN+GYR+RI+EVGS+T+RCSDDFYLMSSADAPA GE GGPT+EV+AP A+++A+AGE+YTVEF YDNGFG  +GRF IDLY+A    G GDCG +VTS+CDKP +GC D+QGDY++VIP D+  GMYKIRVGLFG D +Y CS +FEVV +
Sbjct:    2 SSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSW--NGASADDRFEIDLHYCGSYSYCFE-EAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAA 261          
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 3.370e-112
Identity = 164/253 (64.82%), Postives = 198/253 (78.26%), Query Frame = 1
Query:   16 ASVAVLTGML----TAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV 762
            A +A LTGML    T  EALRVLTP    TVV+D P + SW   GASPDDRFEIDLHYCGSYSFCFE   +CGF + NLC+ +GD ACM+Q+++ SQV  PEP++G SN GYRVRI +VG+ETFRCSD+FYLMSSADA    +  GPT+EV+AP + ++A+AG +YTVEF YDNGFG   GRF IDLY A+G GDCG +V+S+CDKP +GCHDT+GDYDIVIP+D+  GMYKIRVGLFG D V+ CS +FEVV
Sbjct:    6 AFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSW--KGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCA-EGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVV 252          
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 1.400e-75
Identity = 126/249 (50.60%), Postives = 165/249 (66.27%), Query Frame = 1
Query:   40 MLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSE-TFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSDLSMD 783
            ML AA AL V+TP  G  VVA R     W G+G++  +R+EIDL+YCGS   C E+  +CG  +  LC   G+  C   E     +V PEPM+G S  GY+VR+++V  + +  CSD+FYLM+ A+AP+AG+ GGP V V +P +   A AGE YTVEF YDNG G S+GRF IDLY A G GDCG ++ ++CDKP +GC D+ GDYD+ IP+D   GMY IRVG F  D VYGCS+ FE++ +D S D
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSN--NRYEIDLYYCGS--MCMED--ECGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPD 241          
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 2.830e-73
Identity = 126/251 (50.20%), Postives = 158/251 (62.95%), Query Frame = 1
Query:   22 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEV-GSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
            VA+  GML AA AL+V TP  G+TV+ADR     W  +G S D+RFEIDL+YCGS   C E+  DCG  +  LC   G+  C   E     +V PEPM G S  GY+VR+ ++   E   CSD+FYL++S++AP+ G+  GPT+EV +P +  +A     YTVEF YDNG G S+ RF IDLY A G GDCG YV SICDKP +GC D+ GDYD+ IP DT  G YKIRV  F  D +Y CS  F +   D
Sbjct:    7 VALACGMLGAANALKVSTPSKGLTVIADRTYTVEW--TGTSSDNRFEIDLYYCGS--MCMED--DCGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGD 249          
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.040e-70
Identity = 126/251 (50.20%), Postives = 155/251 (61.75%), Query Frame = 1
Query:   22 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSE-TFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
            VA+   ML AA AL V+TP   + VVADR     W G+ +    RFEIDL++CGS   C E+   CG  +  LC   G+  C   E     +V PEPM+G SN GY+VR+ +V  E +  CSD FYLM+S DAP AG   G  + V +P     A AGE YTVEF YDNG G  + RF+IDLY A G GDCG YVTSICDKP +GC D+ GDYD+ IP DT  G YKIRVG F  +++YGCS  F ++  D
Sbjct:    7 VALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG---RFEIDLYHCGS--MCMED--SCGDWVTALCPY-GEEGCPDNEG-DYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD 248          
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.890e-67
Identity = 123/254 (48.43%), Postives = 163/254 (64.17%), Query Frame = 1
Query:   37 GMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYE-AQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV--RSDLSMDL 786
            GML AA AL V++P  G++V+ADR     W G+    D RFEIDL+YCGS  FC E+  +CG  +  LC    D    +Q +    +V PEPM G S+ GY+V +++   E+   CS DF L++S DAPAAGE G  ++ V +P     A+AG +YTVE+ Y+NG G S  RF IDLY    G GDCG YV ++CDKP +GC D+QGDYD+ IP DT  GMY +RVG+F  D ++ CSE FE+V  R+D+SM L
Sbjct:   12 GMLGAANALEVVSPAAGISVIADRTYTVEWTGTS---DSRFEIDLYYCGS--FCMED--ECGDWVTALCPYGADGCPDTQGDYD--IVMPEPMAGTSS-GYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSMRL 254          
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 7.680e-67
Identity = 121/246 (49.19%), Postives = 157/246 (63.82%), Query Frame = 1
Query:   37 GMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
            GML AA AL V++P  G  VVAD      W G+ +    R++IDL+YCGS   C E+  +CG  +  LC   GD  C   +     VV PEPM+G S+ GY+V +++   E+ + CS DF L++S +AP A + G   V V +P     A+AG  YTVEF YDNG G S+ RF IDLY + G GDCG YVT+ICDKP +GC D+QGDYD+VIP  T  GMY IRVG+F  DDVYGCS++FE+V  +
Sbjct:   12 GMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSG---RYDIDLYYCGSV--CMED--ECGDWVTALCPY-GDDGCPDTQG-DYDVVMPEPMDGTSS-GYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGE 246          
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 9.290e-66
Identity = 120/250 (48.00%), Postives = 157/250 (62.80%), Query Frame = 1
Query:   25 AVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
            AV  GML+AA AL V++P  G++V+ADR     W G+      RFEIDL+YC S  FC   D  CG  +  LC    D    S  +    ++ PEPM+G S+ GY+V +     E+   CSDDF L++S DAP AGE G  ++ V +P     A+AGE+YTVE+ Y+NGFG S  RF +DLY   G GDCG YVT++CD+P +GC D+QGDYD+ IP DT  GMY IRVG+F  + +Y CS+ FEV  SD
Sbjct:    8 AVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG---RFEIDLYYCNS--FCM--DDVCGDWVTALCPYGADGCPDSAGDYD--IIMPEPMSGTSS-GYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246          
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.020e-56
Identity = 104/209 (49.76%), Postives = 134/209 (64.11%), Query Frame = 1
Query:   22 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEV-GSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDT 645
            VA+  GML AA AL+V TP  G+TV+ADR     W  +G S D+RFEIDL+YCGS   C E+  DCG  +  LC   G+  C   E     +V PEPM+G S  GY+VR+ ++   E   CSD+FYL++S++AP+ G+  GPT+EV +P +  +A     YTVEF YDNG G  + RF IDLY A G GDCG YV SICDKP +GC D+
Sbjct:    8 VALACGMLGAANALKVSTPSKGLTVIADRTYTVEW--TGTSSDNRFEIDLYYCGS--MCMED--DCGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KPZ5_9PHAE7.430e-11363.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LEQ9_ECTSI7.900e-11363.12EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
D7FN59_ECTSI3.370e-11264.82EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI1.400e-7550.60EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JRG9_9PHAE2.830e-7350.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI1.040e-7050.20EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3F0_ECTSI2.890e-6748.43EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI7.680e-6749.19Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE9.290e-6648.00GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7FH21_ECTSI2.020e-5649.76Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:39502..42672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size895
Hectar predicted targeting categoryother localisation
Exons5
Cds size759
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.14.1prot_P-littoralis_Contig140.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 39541..42575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.9737308-UTR-P-littoralis_Contig140:39501..395401680789653.9737308-UTR-P-littoralis_Contig140:39501..39540Pylaiella littoralis U1_48UTRP-littoralis_Contig140 39502..39540 +
1680789654.0423243-UTR-P-littoralis_Contig140:42575..426721680789654.0423243-UTR-P-littoralis_Contig140:42575..42672Pylaiella littoralis U1_48UTRP-littoralis_Contig140 42576..42672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.9847739-CDS-P-littoralis_Contig140:39540..396081680789653.9847739-CDS-P-littoralis_Contig140:39540..39608Pylaiella littoralis U1_48CDSP-littoralis_Contig140 39541..39608 +
1680789653.9969327-CDS-P-littoralis_Contig140:40053..401531680789653.9969327-CDS-P-littoralis_Contig140:40053..40153Pylaiella littoralis U1_48CDSP-littoralis_Contig140 40054..40153 +
1680789654.007374-CDS-P-littoralis_Contig140:40810..411131680789654.007374-CDS-P-littoralis_Contig140:40810..41113Pylaiella littoralis U1_48CDSP-littoralis_Contig140 40811..41113 +
1680789654.0221286-CDS-P-littoralis_Contig140:41393..415291680789654.0221286-CDS-P-littoralis_Contig140:41393..41529Pylaiella littoralis U1_48CDSP-littoralis_Contig140 41394..41529 +
1680789654.0322304-CDS-P-littoralis_Contig140:42423..425751680789654.0322304-CDS-P-littoralis_Contig140:42423..42575Pylaiella littoralis U1_48CDSP-littoralis_Contig140 42424..42575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.14.1

>prot_P-littoralis_Contig140.14.1 ID=prot_P-littoralis_Contig140.14.1|Name=mRNA_P-littoralis_Contig140.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
MLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSY
SFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGY
RVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALA
GEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCH
DTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSDLSMDLV
AL*
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mRNA from alignment at P-littoralis_Contig140:39502..42672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.14.1 ID=mRNA_P-littoralis_Contig140.14.1|Name=mRNA_P-littoralis_Contig140.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3171bp|location=Sequence derived from alignment at P-littoralis_Contig140:39502..42672+ (Pylaiella littoralis U1_48)
ATCTCCACTGCTGCTGCCTCTGTGGCTGTACTGACGGGCATGTTGACTGC TGCCGAGGCGCTGCGGGTGCTGACGCCTTGGAATGGAATGACGGTCGTTG CAGACAGGTGGGTTGCCAAGTCGTTCTTCTTGCTTTGGGGTTGTTGCACG TCTTCTACAAACATACAGCGGCTGTATGCACAGCAGCACGGAGGCCTCGG ATTTCAAACGAGCCCGAAGGCAAATTCGGACTATCCCCACAACAAGCATC TAGTGCTCGTACTTCGTGTGTAGCAGCGGGGACACACACCCGCACACACA AACGCCCAAAGGAAAGCAGGGTCGGTCTTGTGACTGCGGCTGCAGTAGAC ACACACGCCTACTTGGAACCAGTTGTGGTATTTCATACTTCGAAGTATTA TCATACATAATATTATTATGTACCAGGTACTTCGTATGAGGTAATGCGAT GCCCCCCGAGTTCATATGATATGGTCTATCTTGTCAGCTAGTGAACGTTT GTCTTGTGTTCCTCGCCTTCTATTCTTGGGCTTCCCTTCGCTCTCTCCAC AGGCCCGTCATGACGTCGTGGGGGGGCTCGGGCGCATCGCCGGACGACCG CTTCGAGATCGACCTGCACTACTGCGGCTCGTACTCTTTCTGTTTTGAAA ACGTGAGAGCAACGAACAATAGGCAGACAGATCCAGTAGTATCAATTCAA GACTTTGTACGAGTACATTGTACTGCAGTAGAGAAAGTCGAATCGTTATA ATAACCTCATGAAAGTACTTCGTAAATGATTTATGTGATGATTTGTAGGA GCACAGCAGATGTGTTGAAGCAATCAACTCACACGTTGTGTTCCGTCGCT AATCTTTACTAGTAACGAGACCCTCGCCCTGGGAGAAACGAATACCTAAG TATGATATGATACATGCCGCATTCCTCGTGGAAAAGATTTACGTACATGA ATATAATTGTCACTCGTCTTCTCTCCTGCCGCTGCTGTACCGCGCCAGCC GGTCTTTCCATGCACAGCGCCGGCAGCCATTTCTGTTGACCAGTTTGTAC CTCGACATGAGCCAGCCGTGTGTCGTACTTCTATCGCAAGAACTGTATAA ACTTGTGCGTAAACTGCGTTGCATCTCAAGACACTACCAGCCAATCTTAG CGAGAGAACGGGTAGGTGGGAGGGGTGCCGCAGTTTTCCGATTGGCCAAC ATTTTTTCTAGAAACCATGTGCCTCCCTGCTCGTATGGCCAACTCGCACT TTCTGTTATTACATCTAATTCCCACAAAATAAAAATCCGGAATTCATTCT GACGGGCAGGACCACGACTGCGGGTTCTTGATAGCCAACCTCTGCAGCAA CGACGGCGACTCTGCGTGCATGAGCCAGGAGGAGATGAGCTCCCAGGTCG TGTTCCCGGAGCCCATGAACGGAGTCTCGAACGACGGCTACAGGGTGCGA ATAAGCGAAGTCGGAAGCGAGACGTTCCGCTGCTCCGACGACTTTTACCT CATGTCCTCGGCGGACGCACCCGCAGCCGGAGAGCCCGGGGGGCCGACAG TGGAGGTTCTAGCCCCTGACGCGAACTCGATGGCGTTGGCCGGCGAGATG TACACTGTTGAGGTGAGATTTTACTACGAGTAATTAGGTTGGGAGATCGC AAAGTTTGCTTTTTTTTTGGTTGGTTTATACTCCGGAGTATTTGTTTTTT GGTCCTGTTTTTTGGGCCGGCGTTTGTACAGTACCCGGTAGGAGGGAGAC GGCCGCGGATCAGGTCCAGAATACTTCGAAGCACGTCCTTCTTTTAAATA ATACACGAAATATTTAATTTAAAACCACCGGTTTTAACTTGCACTGCTGC ACTGTGCTGGAATGTGGTGAAAATATGTTACCCCTGCTGCAGTTTGGGTA CGACAATGGCTTCGGCGTGAGCATGGGGCGGTTCAACATCGACCTGTACG AGGCGCAGGGGCCCGGGGACTGCGGGGCTTATGTTACCAGTATCTGCGAC AAGCCCGGCATGGGGTGCCACGACACCCGTGAGTAAAATATAACAAAGCA TGCTCATGCACATCTGAGATATATACGAAGTATCCGAAGTCATGTACAAG TAAGGTACGAGTTTTCATTTGGTGCAGCAGTTCATTCCATATCGAGTTGT TCACTCACAAAGTTCACCCACTAAGAAGTTTAGTAGGAATTCATTTAAGT GCAGCAACAGATATAAAGTTCACCCACTAAGTGTAGGAATTCATTTAAGT GCAGCAGTTCATTTCATGTCGGGTCGTTCACTCACAACATGACATGAAGT TCAATAATATGTGACACGTGAGAAACCAGACAAGATCAAATCAAATGAAA CCATCTCGAGTATTCGTATATATCAAGGAGAGAAAGTGGGCAACTGCCAC ATACGTACATCACTTGAGTGATGCAAAGCTGCTAAATGTACGCATTTCAA GAGAGGCTAGACATGGTGGGGCGGAATCGTCTACGAAGCAGTTCACAGAA GCAGTTCGCAGAACCTGTATATATACTCCTTAAGTATGCGTACTTGCATC CCATTTATTATGGGCACTTGTCTCCCAACTTTCTTGTTTGAGTGGGTGTG CACCAGCCGGGGGCCACATAGAAGGATGGTCACAGAGGTCACACAAGATT TTTTTATTGTTTCTTCCTCCACCACCTTCGTGGTGCTTGTCTTGTACGTG CAAAGTACAGCAGTATTTACAGTATGATGGTTCCCTTAGTATGAAGAGAG GTTGACTACAAGTACATTCAACATGTGATGACAAAATAATTTATATAAAC TTTGTGCTGGTTAACGTTTTTTTTTTTTTTGTGCTGGTTAACGCTTTGTT GTGCTAAAATGCTTGATCCCCCCAACTAATTGTATTTTTTCGTTGTTCGC CCTAACCAAACAAAAACAACAGAGGGCGACTACGACATCGTCATCCCCCA AGACACGGCTGTCGGCATGTACAAGATCCGCGTCGGCCTGTTCGGTGCAG ACGATGTGTACGGATGCTCCGAGGCGTTCGAGGTGGTCCGCAGCGATCTC TCGATGGACCTTGTCGCCCTATAAAAAGGATAGCAAGGTTTTTCATACTT GAAATTCCAGTAAATAACAACCAACCGCGAGTGAGTTTGTTCTACTCGTC GTGAGGGGTACTCGGTCAAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:39502..42672+

>mRNA_P-littoralis_Contig140.14.1 ID=mRNA_P-littoralis_Contig140.14.1|Name=mRNA_P-littoralis_Contig140.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig140:39502..42672+ (Pylaiella littoralis U1_48)
ATGTTGACTGCTGCCGAGGCGCTGCGGGTGCTGACGCCTTGGAATGGAAT
GACGGTCGTTGCAGACAGGCCCGTCATGACGTCGTGGGGGGGCTCGGGCG
CATCGCCGGACGACCGCTTCGAGATCGACCTGCACTACTGCGGCTCGTAC
TCTTTCTGTTTTGAAAACGACCACGACTGCGGGTTCTTGATAGCCAACCT
CTGCAGCAACGACGGCGACTCTGCGTGCATGAGCCAGGAGGAGATGAGCT
CCCAGGTCGTGTTCCCGGAGCCCATGAACGGAGTCTCGAACGACGGCTAC
AGGGTGCGAATAAGCGAAGTCGGAAGCGAGACGTTCCGCTGCTCCGACGA
CTTTTACCTCATGTCCTCGGCGGACGCACCCGCAGCCGGAGAGCCCGGGG
GGCCGACAGTGGAGGTTCTAGCCCCTGACGCGAACTCGATGGCGTTGGCC
GGCGAGATGTACACTGTTGAGTTTGGGTACGACAATGGCTTCGGCGTGAG
CATGGGGCGGTTCAACATCGACCTGTACGAGGCGCAGGGGCCCGGGGACT
GCGGGGCTTATGTTACCAGTATCTGCGACAAGCCCGGCATGGGGTGCCAC
GACACCCAGGGCGACTACGACATCGTCATCCCCCAAGACACGGCTGTCGG
CATGTACAAGATCCGCGTCGGCCTGTTCGGTGCAGACGATGTGTACGGAT
GCTCCGAGGCGTTCGAGGTGGTCCGCAGCGATCTCTCGATGGACCTTGTC
GCCCTATAA
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