mRNA_P-littoralis_Contig140.14.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 336 bits (861), Expect = 7.430e-113 Identity = 158/248 (63.71%), Postives = 196/248 (79.03%), Query Frame = 1
Query: 28 VLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
VL +T+ EALRVLTP +V + RP + SW GA DDRFE+DLHYCGSYSFCF DCGF IAN+C N+ D ACM Q++ SSQV FPEP+ G SN+GYRVRISEVG++ FRCS+DFYL++SAD GEPGGPT+EV+AP+AN++A+AGE YTVEF YDNGFG +GRF IDLY+A+G GDCG++VTS+CDKP MGC D++GDYD+VIP D+ GMYKIRVGLFG D +Y CS +FE+ ++
Sbjct: 14 VLGNTITSTEALRVLTPAVAESVASGRPYVVSW--QGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVC-NEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTN 258
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 336 bits (862), Expect = 7.900e-113 Identity = 166/263 (63.12%), Postives = 207/263 (78.71%), Query Frame = 1
Query: 4 STAAASVAVLTGML-----TAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEA---QGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRS 768
S++ AS+ L G+L T+ EAL+VLTP TVV+ RP + SW +GAS DDRFEIDLHYCGSYS+CFE + +CGF +AN+C+ S CMSQ + SSQV FPEP+ G SN+GYR+RI+EVGS+T+RCSDDFYLMSSADAPA GE GGPT+EV+AP A+++A+AGE+YTVEF YDNGFG +GRF IDLY+A G GDCG +VTS+CDKP +GC D+QGDY++VIP D+ GMYKIRVGLFG D +Y CS +FEVV +
Sbjct: 2 SSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSW--NGASADDRFEIDLHYCGSYSYCFE-EAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAA 261
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 333 bits (855), Expect = 3.370e-112 Identity = 164/253 (64.82%), Postives = 198/253 (78.26%), Query Frame = 1
Query: 16 ASVAVLTGML----TAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV 762
A +A LTGML T EALRVLTP TVV+D P + SW GASPDDRFEIDLHYCGSYSFCFE +CGF + NLC+ +GD ACM+Q+++ SQV PEP++G SN GYRVRI +VG+ETFRCSD+FYLMSSADA + GPT+EV+AP + ++A+AG +YTVEF YDNGFG GRF IDLY A+G GDCG +V+S+CDKP +GCHDT+GDYDIVIP+D+ GMYKIRVGLFG D V+ CS +FEVV
Sbjct: 6 AFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSW--KGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCA-EGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVV 252
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 241 bits (615), Expect = 1.400e-75 Identity = 126/249 (50.60%), Postives = 165/249 (66.27%), Query Frame = 1
Query: 40 MLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSE-TFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSDLSMD 783
ML AA AL V+TP G VVA R W G+G++ +R+EIDL+YCGS C E+ +CG + LC G+ C E +V PEPM+G S GY+VR+++V + + CSD+FYLM+ A+AP+AG+ GGP V V +P + A AGE YTVEF YDNG G S+GRF IDLY A G GDCG ++ ++CDKP +GC D+ GDYD+ IP+D GMY IRVG F D VYGCS+ FE++ +D S D
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSN--NRYEIDLYYCGS--MCMED--ECGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPD 241
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 235 bits (599), Expect = 2.830e-73 Identity = 126/251 (50.20%), Postives = 158/251 (62.95%), Query Frame = 1
Query: 22 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEV-GSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
VA+ GML AA AL+V TP G+TV+ADR W +G S D+RFEIDL+YCGS C E+ DCG + LC G+ C E +V PEPM G S GY+VR+ ++ E CSD+FYL++S++AP+ G+ GPT+EV +P + +A YTVEF YDNG G S+ RF IDLY A G GDCG YV SICDKP +GC D+ GDYD+ IP DT G YKIRV F D +Y CS F + D
Sbjct: 7 VALACGMLGAANALKVSTPSKGLTVIADRTYTVEW--TGTSSDNRFEIDLYYCGS--MCMED--DCGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGD 249
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 228 bits (581), Expect = 1.040e-70 Identity = 126/251 (50.20%), Postives = 155/251 (61.75%), Query Frame = 1
Query: 22 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSE-TFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
VA+ ML AA AL V+TP + VVADR W G+ + RFEIDL++CGS C E+ CG + LC G+ C E +V PEPM+G SN GY+VR+ +V E + CSD FYLM+S DAP AG G + V +P A AGE YTVEF YDNG G + RF+IDLY A G GDCG YVTSICDKP +GC D+ GDYD+ IP DT G YKIRVG F +++YGCS F ++ D
Sbjct: 7 VALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG---RFEIDLYHCGS--MCMED--SCGDWVTALCPY-GEEGCPDNEG-DYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD 248
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 219 bits (558), Expect = 2.890e-67 Identity = 123/254 (48.43%), Postives = 163/254 (64.17%), Query Frame = 1
Query: 37 GMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYE-AQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVV--RSDLSMDL 786
GML AA AL V++P G++V+ADR W G+ D RFEIDL+YCGS FC E+ +CG + LC D +Q + +V PEPM G S+ GY+V +++ E+ CS DF L++S DAPAAGE G ++ V +P A+AG +YTVE+ Y+NG G S RF IDLY G GDCG YV ++CDKP +GC D+QGDYD+ IP DT GMY +RVG+F D ++ CSE FE+V R+D+SM L
Sbjct: 12 GMLGAANALEVVSPAAGISVIADRTYTVEWTGTS---DSRFEIDLYYCGS--FCMED--ECGDWVTALCPYGADGCPDTQGDYD--IVMPEPMAGTSS-GYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSMRL 254
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 218 bits (555), Expect = 7.680e-67 Identity = 121/246 (49.19%), Postives = 157/246 (63.82%), Query Frame = 1
Query: 37 GMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
GML AA AL V++P G VVAD W G+ + R++IDL+YCGS C E+ +CG + LC GD C + VV PEPM+G S+ GY+V +++ E+ + CS DF L++S +AP A + G V V +P A+AG YTVEF YDNG G S+ RF IDLY + G GDCG YVT+ICDKP +GC D+QGDYD+VIP T GMY IRVG+F DDVYGCS++FE+V +
Sbjct: 12 GMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSG---RYDIDLYYCGSV--CMED--ECGDWVTALCPY-GDDGCPDTQG-DYDVVMPEPMDGTSS-GYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGE 246
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 215 bits (548), Expect = 9.290e-66 Identity = 120/250 (48.00%), Postives = 157/250 (62.80%), Query Frame = 1
Query: 25 AVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEVGSET-FRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDTQGDYDIVIPQDTAVGMYKIRVGLFGADDVYGCSEAFEVVRSD 771
AV GML+AA AL V++P G++V+ADR W G+ RFEIDL+YC S FC D CG + LC D S + ++ PEPM+G S+ GY+V + E+ CSDDF L++S DAP AGE G ++ V +P A+AGE+YTVE+ Y+NGFG S RF +DLY G GDCG YVT++CD+P +GC D+QGDYD+ IP DT GMY IRVG+F + +Y CS+ FEV SD
Sbjct: 8 AVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG---RFEIDLYYCNS--FCM--DDVCGDWVTALCPYGADGCPDSAGDYD--IIMPEPMSGTSS-GYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 191 bits (485), Expect = 2.020e-56 Identity = 104/209 (49.76%), Postives = 134/209 (64.11%), Query Frame = 1
Query: 22 VAVLTGMLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYSFCFENDHDCGFLIANLCSNDGDSACMSQEEMSSQVVFPEPMNGVSNDGYRVRISEV-GSETFRCSDDFYLMSSADAPAAGEPGGPTVEVLAPDANSMALAGEMYTVEFGYDNGFGVSMGRFNIDLYEAQGPGDCGAYVTSICDKPGMGCHDT 645
VA+ GML AA AL+V TP G+TV+ADR W +G S D+RFEIDL+YCGS C E+ DCG + LC G+ C E +V PEPM+G S GY+VR+ ++ E CSD+FYL++S++AP+ G+ GPT+EV +P + +A YTVEF YDNG G + RF IDLY A G GDCG YV SICDKP +GC D+
Sbjct: 8 VALACGMLGAANALKVSTPSKGLTVIADRTYTVEW--TGTSSDNRFEIDLYYCGS--MCMED--DCGDWVTALCPY-GEDGCPDNEG-DYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig140.14.1 >prot_P-littoralis_Contig140.14.1 ID=prot_P-littoralis_Contig140.14.1|Name=mRNA_P-littoralis_Contig140.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp MLTAAEALRVLTPWNGMTVVADRPVMTSWGGSGASPDDRFEIDLHYCGSYback to top mRNA from alignment at P-littoralis_Contig140:39502..42672+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig140.14.1 ID=mRNA_P-littoralis_Contig140.14.1|Name=mRNA_P-littoralis_Contig140.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3171bp|location=Sequence derived from alignment at P-littoralis_Contig140:39502..42672+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig140:39502..42672+ >mRNA_P-littoralis_Contig140.14.1 ID=mRNA_P-littoralis_Contig140.14.1|Name=mRNA_P-littoralis_Contig140.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig140:39502..42672+ (Pylaiella littoralis U1_48)back to top |