mRNA_P-littoralis_Contig14.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.12.1
Unique NamemRNA_P-littoralis_Contig14.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.12.1 vs. uniprot
Match: D7G074_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G074_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.560e-15
Identity = 72/186 (38.71%), Postives = 94/186 (50.54%), Query Frame = 2 
Query:  275 RVTRRSGAQPDIDLWGLKDLPKTSATKNTSVRNT--YTVKVGKTVRDKDMRELRRAAKENDLAVSSSPVYVVTGAPRTPSEQAAGDLPTRGETR--------KGATAASVGCGASVRSTIQFGSMPV-INIYPSHLTEAEANQYLTG------LRREKWCSACPE--RLSHAQCTGDRSAPAMPAI 775
            R TR SG   D++LW L+DLPKTS  K     N   YTV++ +  RD+DM+ LRR A++ +    S PVY +TG      ++AA  L   GE R        K A + S  CGA  RSTI  GS+P+ + I    L EAEA+  L        L  E   S+ P   +L HAQ   D S  A  A+
Sbjct:   31 RATRNSGIGIDVNLWDLRDLPKTSTVKRAPKLNLKDYTVRLPRASRDQDMKLLRRTARDIEGVGESDPVYPLTGPACITRKEAAAALLALGEERDDAMVAAAKAAVSESGDCGAGARSTIADGSIPLAMGINQPLLAEAEADARLASPGVSRSLTTEDQRSSLPHPAQLYHAQGKPDSSDDATGAM 216
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BLAST of mRNA_P-littoralis_Contig14.12.1 vs. uniprot
Match: A0A6H5JA29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA29_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.410e-11
Identity = 60/166 (36.14%), Postives = 82/166 (49.40%), Query Frame = 2 
Query:  275 RVTRRSGAQPDIDLWGLKDLPKTSATKNTSVRNT---------------------YTVKVGKTVRDKDMRELRRAAKENDLAVSSSPVYVVTGAPRTPSEQAAGDLPTRGETR--------KGATAASVGCGASVRSTIQFG--SMPV-INIYPSHLTEAEANQYL 676
            R TR SG   D++LW L+DLPKTS  K+ +  N                      YTV++ +  RD+DM+ LRRAA++N+    S PVY +TG      ++AA  L   GE R        + A + S  CGA   STI  G  S+P+ + I    L EAEA+  L
Sbjct:    7 RATRNSGIAVDVNLWDLRDLPKTSTVKSAATMNNSPDPPSPRSTTHAAPKLKLKDYTVRLPRASRDQDMKLLRRAARDNEGVGGSDPVYPLTGPACITRKEAAAALLALGEERDDEMVAXXRAAASESGDCGAGAGSTIADGESSIPLAMGISQPLLAEAEADARL 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G074_ECTSI3.560e-1538.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA29_9PHAE1.410e-1136.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:28557..35352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size799
Hectar predicted targeting categoryother localisation
Exons4
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.3394828-CDS-P-littoralis_Contig14:28556..287441680789646.3394828-CDS-P-littoralis_Contig14:28556..28744Pylaiella littoralis U1_48CDSP-littoralis_Contig14 28557..28744 -
1680789646.3524556-CDS-P-littoralis_Contig14:29600..298521680789646.3524556-CDS-P-littoralis_Contig14:29600..29852Pylaiella littoralis U1_48CDSP-littoralis_Contig14 29601..29852 -
1680789646.3617475-CDS-P-littoralis_Contig14:30687..307781680789646.3617475-CDS-P-littoralis_Contig14:30687..30778Pylaiella littoralis U1_48CDSP-littoralis_Contig14 30688..30778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.3723786-UTR-P-littoralis_Contig14:30778..307951680789646.3723786-UTR-P-littoralis_Contig14:30778..30795Pylaiella littoralis U1_48UTRP-littoralis_Contig14 30779..30795 -
1680789646.381822-UTR-P-littoralis_Contig14:35101..353521680789646.381822-UTR-P-littoralis_Contig14:35101..35352Pylaiella littoralis U1_48UTRP-littoralis_Contig14 35102..35352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.12.1prot_P-littoralis_Contig14.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 28557..30778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.12.1

>prot_P-littoralis_Contig14.12.1 ID=prot_P-littoralis_Contig14.12.1|Name=mRNA_P-littoralis_Contig14.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MGRVTRRSGAQPDIDLWGLKDLPKTSATKNTSVRNTYTVKVGKTVRDKDM
RELRRAAKENDLAVSSSPVYVVTGAPRTPSEQAAGDLPTRGETRKGATAA
SVGCGASVRSTIQFGSMPVINIYPSHLTEAEANQYLTGLRREKWCSACPE
RLSHAQCTGDRSAPAMPAIARTRGAAA
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mRNA from alignment at P-littoralis_Contig14:28557..35352-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.12.1 ID=mRNA_P-littoralis_Contig14.12.1|Name=mRNA_P-littoralis_Contig14.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6796bp|location=Sequence derived from alignment at P-littoralis_Contig14:28557..35352- (Pylaiella littoralis U1_48)
GTTGATTCGGACGGGAGATCACCAGTGTGCAGCAGCAACGGATTCTTCGT
CAAGCACAAACTTCGCAGCGAGAGAGACAAGGAAAGTCCACCTCTACTTT
TCAGTCTTCGACAGCAGCAACGATACAACATCAACCCCGGACAATCGTCG
TGAGACCTTGAGATTGAGAATACAAACCGAATCGACCAGATAACATCCAA
GACACACGGCATTCAAGAGCATTCTCCACAGCAACGGTAGAGACAGCAAA
GGTAGGGGGAGCGATGAACCCACAGGCCGGCACAAAGAAACACCCTTGCA
GGGTGATGTGCCTGCAGGTAAAACCTTCAGAATGTTGGTGTAGCGTCGAG
GACGTTGTAGGGATGGACACGGTGGTCCCAGTAGAGCTCTTTCGCCCTCT
GGTCCACTGACAGCAGTAGATTCACCGTGCGAGCGACGGGGTTGTGGAGA
AACGATTTCCACCCCCTTCCATTTGACAGCTAGCGTGTTTACAGTCGTGG
CCTGCCTCGACACATGCGCCAGCTCGATGAGACACGACCACAGCAAAACA
TAAGATCTGAGGAGCGCTATAGTACGCGTATGGCGCCATGTGGGTCACTG
CTGTGCCGAAACGGGTCAACCCGACCCTACAATAGCCATGCGTGTTCAAT
CTTACGAAGTACATCCAGAGGATCGTTTTGTTGATCATTTCAGTTCTGCG
TACTGCGGCGCGCAAGTCCTTTCCTTGTGGTGGGGTATGCGAGGACCAAG
ACTGACCGACTGCGGCCGACCTGTGCCATTCGCGTATCACCAATATTTCT
CGTCTGGGGAACATCTGCTTCAGTATCTTCTAGCTCGTACCCCGCGCGCC
GCCGCGTACGCGGTCAATGTGTGTGCGTGTGTGCTACATAGGAGTACATC
TTTATGATACAGCTTGTATTTTTTTTGGACGAATTTTCCGAGCGCGGCGA
ACACCAGTATTTCCTGCCTTCTCTTTCTCGGCCTCTCCCTGTCTCCCTTT
GTTTCTCCTTTTCTCTCTCCGTACCTCCCCCCAACTCGCCAAACCCGTGT
CAAGTACAACGTACATGCTGTATAGCCGATCGTTGATACGTCAGCAAACC
GAGCGGGGTGCTGAGTTTGTTTTTTCTGTGTGCTACGCCGCGATATAGTT
TTGTTCAGCCAGCTGATATGTGGTGTAAAGGGATGAGCCCCTAGCACTAT
CAAGAGGAACGTCGGGGGTTCACTTCCCAGCACCACGTGTTCATTGTCCC
AATCTGAAAAACCCGGGATCAGACCGGGAGTGTCGCATGATCTCTTTATC
ACATATGGCACGATTTCCACGTGTAGCACAACGCCAGGGGAATAATCCTC
GGGGGATAAGCTCAGGAATCGCACCTCAAATGCGTCAGCTGACTTTGTGG
TGTATTCTTGTAGGACTAGCCCTTATCACACATCGCACCAGTATTTTTTA
CCAACCGTAGAAGTGTAAGGTTCGGTGAGCCATGTACGCACCGATACCTC
GCGGGGTACTTCTCTCTGTATAAGCGATGCCAGATGCGGTACCGAAGGGC
TGCACAGAACATAGAAACCATGTAAATACACACGGCGCACCGCGAAATCG
TCTTGAGCACTGTGTAATTAATTTGTTTAGACGAACTTATGGGAAAAACG
GGGAAAAGCTTTGTTACCGAATCCGAGGGGGTGTGAGGTGGTGGGTGTGA
CATTTGTGTGAAGTGACACGGAGGCTGGAGGGCGTGTGCGTGCGGGAAGC
ATCCGCAGTTTTATACAGTACGCAACGCCCATCCGCGATAGCAACAGCAT
GCATGACGGTTGGTCGTAGTCGATGGCTCTGGTTCGAGCCCGCAACGAAT
CCATCGTCGCTACAAGCGACTCAACACGCCACACGTGCGACAAACAGGCA
TTAAATTTTAATAAACACAAACACCAGGCTGCGACGAAACTCAAAATGTT
TTGGTTGCCACACGCTTGTAGCTCAACTGCACAATAGTCAGACCACCACC
GCATGGTGCGTAACTCCCTGCCTGTACTGCGTGTATTTCGCAATAAGGTA
GCGCCTGTCTTTGATGTCACGTGGACGGTAGGGCGTGTCTTCCGGTCGCG
ACCTGTGGAGCCAAGCAAGATTTAAATCTTGAACGCGCACATGTGTTGCT
GAAAGTAGTATACTCGGAGTAATTTTTCTCAAATCTGAAGAAATACAACG
TACATGCAGCATGCGTGACAACCTTCGATTGATGCTGCTGCCACCACTCC
CCATCCCTCTTGTCGCACGTGAAAGTGTACGATGTAAGAAGCACATACAG
CACGTGTTTCCAGGAGTACCATAACGGCTTCTGCAATTGTTGTGTGCGTT
GTTGCGTCTACATCTATCTCATTGCTCCTGACCGTCAGGGTATTTGTGCG
TGAAGGTCATCCCGTTGGTGTGGTCTCCGTCTCCCTGTTGTCAAGTACCA
TAACGGCTTCAGCAGTACGTTAAAAGCGTGGACCAGTCTGTTCGAGAATA
TCGCTGAAATTCGAAAAGTCGGGAATTTATCTAACGCTTCATGTTTATTA
GCATTATATCATAGAGAAAAGCAAGAGCAATTCCGAAAGCACAAGGCGTG
TGCTCACACCTCACTCGAGTTCGAGAGGGGCGAAAGACATACCAGGTGTT
ATGTTGTCCTGGGGATTTTTCATTGATCATCTCCTCCGCGGATACCCGAG
AATTTAGTTTTTCCCATTAAAGTAATTTACTATTTTTTGAAGTGCCCTCA
AGAAGCCAGGATCTATTACTTTTCGTTTTTTTTGTAGTGTGAGCCCTCGT
GGCCATGCTGTCTCAGTTGCTCAACCGGTACATGTTCGAGCAAAAAAAAA
AATTGTCGCATTTGACAGAAAAATTAATCGGATAAGAAAACATTTAAGAA
AACAAATTGTGAACGAGAAAACAAAAAATAGTCGATTCCAGTCGATTCCG
GGCTCGAGCCCGGGTCCGATGTTTCCACGCTGGTGGAAAGAAAATCCGCT
TGCCTCCAAACGTGACCCACGTTTCCGAACAGACTGGTAAACGTGATTTG
ATTTCCAAGGTTCAGCTCTTATTTTCCCATGCACGTTTGCCTAGTCCCAA
CTGCCACGCGCGTCGCTTGCCCGACTACCGTAGTATCCGTTGAGAACGCC
CCGGGGGGAGCATACACATTTTTGCGTAATAATGTTACCCCGGGGAGTTC
TCAGAGGTAGAGGGGCGATATTTTTCAGAAAATAATTTTAAGCCCGGGGC
ATTGTCTGAAAAAAGCAGAAGCAGTATTCAGATCTGCACACCAAAGATTC
ATCAGCTACGGCGAACTGCTGACCGAGTCTTTCTGGTGGAGCAGTCCACG
ACGAAGAGAAACGAACTCTCGCGGGCACAGCCAATGATTTTCAACAGCGC
CACACCACCACCACCACCACCAATATTACTACACAAACTCTCATACTAAT
TACCGGAATAAATGCTAAGAAATTCTGCGAACACCCCGTGGGGCACCGAA
ATAATTTGACGAAAAAAGACCGCCCCGGGGCGAACTCAAATGTAAAGGGG
CGAAATAAAAAACTAAACGTTCACCCCGGGGCGAACTCAAAGTTTACGTG
GTGCCCCGGCGGTATTTGGGGGTGGGGGGGCGTTCTCATGGACGGGGGCG
TTCTCAAAGGAAACTACGGTACACTTTGAAACGAGGGCGAACATGACGTG
CCCTCTCTAGTCAGACTTTCCCAGAACGACACATGCATCTGGGCAAAACA
GTCTGCAACAACGGTGCCTTCAAACCCAAAATGAAGGGTCGCTAGAGAGA
ACAAAAAGAGAGGTCGCCTGAGGCAAAAAAGCCGCGACGTCACCGTCATT
CCGCGGCTACTTTTGATACGAGCTGGCTGTGCCGTTTGTTCCTACTGCCA
AGTGACTGCCATTTTCTGGTCCCCCAATTTTGTCGCTCGGGCCCCATGGG
GAAAGCATAGCCAGAAGTGGGCGCTCCATTTTCTACTTCACGCCTCTCTG
TCTTGGCTTTGCTGCCGCGCTTCGGGTTCATTCACAGGGCCGTCTACGCA
TCGAGCGGGTGTTTGTGTGATGTGTGTGCGTGTGGCAACCTTTTTCCTCC
ATGACCGACAAAGGGCCAATGCGCCGCGTGGTGCGTCTTGGGAAAACTCT
CGACGACATTTTTCCAACGGTGGTATGTTCGTTCGCCGCATGCTACCGTC
CCGTTGTGGAGAAAGAACGCCGACTGTGAATTTTGATTCTCCCGTCGGGG
GATAACTGAAGGAGGTTTGCGGTATTTCAGCACCCTCATGATTGTATGAC
GACACCGGGTGCACGTACGTTACACAAATTCCCAACCGGCAAAATGAGCT
TCTACGGAAGTATCGTACGCAGGGCCAACGAAAGACAACTCCTTGGTATT
TGATTTGCCATCCAACCAAGGCGTGAAGTGTGGAGCATGGTTGCGGGGAT
CCACTCCATGACTACAATAACAACACTGTAAATATTGAGTGAGGTTTCAG
AAGAAAACAGTCGTGTCTGCGCCCCCCCCCGCGCCTGTGCTGCACTGTGG
TGTACAGGGAGAGAGGAGCCAGCGATGGGACGAGTCACACGCAGATCCGG
GGCTCAACCAGACATCGACCTGTGGGGTCTCAAGGACCTTCCCAAGACCA
GCGCGACCAAGAATAGTGAGTGAGATGGCTCGAAAGGAAACGGATGCTCG
ACCAACCATATGTACATCATACAATACAGCACTGATACTGTATTTGAGCA
GCGCTGGAAATGACGTGTAAGCACGAGCATCGGCTTAGCTCAGCACATGC
TCATCGTACGCAGTCCTTTAGCGTATTTGGTATTTTCTTGTGAGCAAACG
CAAGGCAAGAGGGGTGTAAGTTTTCCTTGTCTTGCCGATTTTCCTACCGC
AACAACGAACTTCAATCAATGTAGCATATCATTGAATCAGCTCAGCCTGT
TGTATATAGCTTACGTACGTCGGAGTACCTATTTCACCGGGGAGCATCTG
GTTGTCTGAGCCTCCATCCAATCAGAGCGAAACCTGTGTCCAGGAAGGAG
TATTAGTCCTCGGAGTTTCATAGGGACGAGGCTCGCGCAAGGCGTGTACC
TGGCAAGCTAAATAATCGTTCTGACATTTTATCAAAGTCTCCATTTACCC
AAAATGTCATGGAGGCAAAAATCACCTTGCAATCGGGGTAGATTAGAGCT
GTTTGCAAAGATCCTTTTGGTGGAACAGAACACACAGAATGTTTCTGGTG
AACTATGTTGAAGCTGTTCGCTACGTTCATGCGCCCCTGTATAGCCCGAT
TTCACCTCTGGGGGACAGGCAATTTGAACAAGGTACGGTGTACTCTGTAT
GGCTTGGGGTGTAATTGTTTTGGAACCATCATCGTGCAAATGAACGTCAA
CGTAAAATAAGACCATTTGGGATCTGTGTCGATTCGAACCAGTTAGAACT
AGGATTGAATGTAACCACAGCCCTCGTTTCTCATGCCCCGACGGACCCAG
CCTCCGTGAGAAACACGTACACGGTCAAGGTGGGCAAGACGGTGCGCGAT
AAGGACATGAGAGAACTTCGACGAGCAGCCAAGGAGAACGACCTGGCCGT
GAGCTCCTCGCCCGTGTACGTGGTGACTGGTGCTCCTCGTACCCCTAGCG
AGCAGGCGGCAGGGGACCTGCCAACTCGTGGCGAAACGCGCAAGGGTGCA
ACGGCGGCGAGCGTCGGCTGTGGTGCAAGCGTGCGGAGCACAATCCAATT
TGGTAAGGGAAAATCATATCGTCTGTAGCGGGTGTATTCGTGTGTTTTCA
ATAACGTGGATGGTTGTAGGGTACTTCCACAGACCCTCGCATCCGTACAG
CTCCGGGACGGAGCTCGTCAGGCTGTCCCCGACTAGGCAGGCGTTGCACC
AGGTACGAGACAGCACAGTGTGTGAAGTGTTCGACGAGTGTCATGGATTG
TGAAGTAATTGCGCCCCAAGAACTTGCTATGAGAGGGTCGTTGATGTAAC
CTGTGGTGGTACCTGCGTGTCGCAATCGCTCCCTGTATTATGTGTAGCTT
GGAATTAATTGAGTCTGTGCCAAGGAGTGGCCACCTCCTGATACAGCCTC
GGGGTACACCATTGACTTCATCGTAGCTGCCCGACCAGATACACATCGAG
GTGATACAATCGATCATGCACCTTGTGCGGAGGGAGAGGGTTCTCCACCC
CGCACAATGTGTCGGAACTTTTAGCCATGTTCAAAGACAAAACCGCGGGT
GCTGAATGGCAAGTCGTGCGATACCATGCAGGACGGGAGAACCGGAACCA
GTTTCACCGCAAGTGGTTTTGGGGTTATCAAATGAAGTAGTTGAACAAAG
CGGAAGTGAAAATGGTGTCTCTCTTTCCTTTGGGGACAGATGATACGTAT
CAACGAACAGTTCCTGCACTTGCGACCCCCCCTGGTTGTCCAAGAGCACA
ACCGAGTGAAGCATATGTTGCCGTCACGCCTGCTTGTGTCACGTTCGATT
CACTGGCCTCATCATCGTTTGGTCCGTTGACAAAGAAGTAGTAGCACAAG
ATCTTCGCAAAGCTCCCCTCAGCCTCCCACCCCCGTTGACCCGCCTCCGC
TCTTTCAGGCTCGATGCCCGTCATCAACATCTACCCATCCCATCTCACCG
AAGCCGAAGCCAACCAGTACTTGACCGGCCTTCGACGAGAGAAGTGGTGC
TCTGCGTGTCCCGAGCGGCTCTCTCACGCCCAGTGTACAGGGGATCGGTC
GGCTCCAGCTATGCCCGCTATAGCTAGAACGAGAGGAGCGGCGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:28557..35352-

>mRNA_P-littoralis_Contig14.12.1 ID=mRNA_P-littoralis_Contig14.12.1|Name=mRNA_P-littoralis_Contig14.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig14:28557..35352- (Pylaiella littoralis U1_48)
ATGGGACGAGTCACACGCAGATCCGGGGCTCAACCAGACATCGACCTGTG
GGGTCTCAAGGACCTTCCCAAGACCAGCGCGACCAAGAATACCTCCGTGA
GAAACACGTACACGGTCAAGGTGGGCAAGACGGTGCGCGATAAGGACATG
AGAGAACTTCGACGAGCAGCCAAGGAGAACGACCTGGCCGTGAGCTCCTC
GCCCGTGTACGTGGTGACTGGTGCTCCTCGTACCCCTAGCGAGCAGGCGG
CAGGGGACCTGCCAACTCGTGGCGAAACGCGCAAGGGTGCAACGGCGGCG
AGCGTCGGCTGTGGTGCAAGCGTGCGGAGCACAATCCAATTTGGCTCGAT
GCCCGTCATCAACATCTACCCATCCCATCTCACCGAAGCCGAAGCCAACC
AGTACTTGACCGGCCTTCGACGAGAGAAGTGGTGCTCTGCGTGTCCCGAG
CGGCTCTCTCACGCCCAGTGTACAGGGGATCGGTCGGCTCCAGCTATGCC
CGCTATAGCTAGAACGAGAGGAGCGGCGGCG
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