mRNA_P-littoralis_Contig1399.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1399.11.1
Unique NamemRNA_P-littoralis_Contig1399.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 1.290e-85
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1
Query:   25 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 651
            SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV
Sbjct:  399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607          
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 2.710e-63
Identity = 158/217 (72.81%), Postives = 166/217 (76.50%), Query Frame = 1
Query:    1 MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 651
            MPSTLSKASGSVER +ATTDIDRRCGDTN TPLMVASVIGSSRVV+DLLRQGASVS+ADSDGY ALHH+VYH+HLAVS  LIEAGADL+ARPG                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NPLLSA                   ELV+WYGTD CT+DGG LALATAASR  VDIVTFLCDAGV
Sbjct:    1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217          
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 2.490e-56
Identity = 96/111 (86.49%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEM 333
            MPSTLSKASGS++  IATT IDR CGDTNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDG  ALHH+VYH HLAVSKDLIEAGADL+AR GG DTPLHVAATKGFCQ M
Sbjct:    1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGM 111          
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 7.220e-50
Identity = 150/217 (69.12%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    1 MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 651
            MPSTLSKASGS +  IATTDIDRRCG TNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHHAVYHKHLAVSK                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NPLLSA                   ELV+WYGTD CTSDGGALALATAASR  VDIV FLC+AGV
Sbjct:  422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638          
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.150e-46
Identity = 160/218 (73.39%), Postives = 162/218 (74.31%), Query Frame = 1
Query:    1 MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSA-DXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 651
            MPSTLSKASGS +  IATTDIDRRCGDTNQTPLMVASVIG SRVVRDLLRQGASVS+ADSDGY ALHHAVYHKHLAVSK                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LSA         XXXXXXXXXX ELVYWYG D CTSDGGALAL TAASR  VDIVTFL DAGV
Sbjct:    7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224          
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 7.410e-25
Identity = 79/224 (35.27%), Postives = 104/224 (46.43%), Query Frame = 1
Query:   22 ASGSVERPI-----ATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGI---------DTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 651
            +SGSVER +       T+IDRRC +   T LM A+  G  R+VR LLR GA VS++  DG+ ALH A+  ++LAV+K LI+AGA+++A+   +          TPLH+AA +GFC+ M                                         NPLL                     ELV  +G DGC  +G   AL TAA  N   I+TFL DAGV
Sbjct:   26 SSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGV 249          
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.120e-23
Identity = 80/191 (41.88%), Postives = 95/191 (49.74%), Query Frame = 1
Query:  103 VASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPG-----GID-TPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSA--DXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 651
            VAS +G  RVVR LLR GA VS AD+DG  ALH ++ +KHLAVSK L++AGADL+AR       G+  TPLHVAA KGF + M                                         NP+L+A                     EL   +G DGC+ DGGA AL  AAS+NQVDIVTFL D GV
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKA-------------------------NPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGV 202          
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: UPI001C049DCF (putative palmitoyltransferase ZDHHC13 isoform X2 n=2 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C049DCF)

HSP 1 Score: 65.1 bits (157), Expect = 1.080e-8
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   61 IDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATK 315
            +D+  GD N TPL  A   G   +V  LLR GA +SLAD +GY ALH A+  +H+AV+  L+  G ++D       TPL +AA K
Sbjct:  132 VDQLGGDLNSTPLHWAIRQGHLPMVIQLLRYGADLSLADGEGYHALHLAILFQHMAVAAYLMAKGQEVDGPDSNGQTPLMLAAQK 216          
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: Q4TDF9_TETNG (Chromosome undetermined SCAF6289, whole genome shotgun sequence (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4TDF9_TETNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.690e-8
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   61 IDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATK 315
            +D+  GD + TPL  A   G   +V  LLR GA  S+AD +GY ALH A+  +H+A++  L+  G D+D +     TP+ +AA K
Sbjct:  105 VDQLGGDLSSTPLHWAIRQGHLSMVIQLLRYGADPSIADGEGYRALHLAILFQHMAIAAYLMAKGQDVDEQDANGQTPVMLAALK 189          
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Match: Q4SHA5_TETNG ((spotted green pufferfish) hypothetical protein (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SHA5_TETNG)

HSP 1 Score: 62.4 bits (150), Expect = 8.780e-8
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   61 IDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATK 315
            +D+  GD + TPL  A   G   +V  LLR GA  S+AD +GY ALH A+  +H+A++  L+  G D+D +     TP+ +AA K
Sbjct:   78 VDQLGGDLSSTPLHWAIRQGHLSMVIQLLRYGADPSIADGEGYRALHLAILFQHMAIAAYLMAKGQDVDEQDANGQTPVMLAALK 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1399.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1W5_9PHAE1.290e-85100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE2.710e-6372.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI2.490e-5686.49EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JL58_9PHAE7.220e-5069.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE1.150e-4673.39Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE7.410e-2535.27Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6H5JNS0_9PHAE1.120e-2341.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001C049DCF1.080e-843.53putative palmitoyltransferase ZDHHC13 isoform X2 n... [more]
Q4TDF9_TETNG1.690e-840.00Chromosome undetermined SCAF6289, whole genome sho... [more]
Q4SHA5_TETNG8.780e-840.00(spotted green pufferfish) hypothetical protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1399contigP-littoralis_Contig1399:14620..15270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LH66
Model size653
Max annot lvl2880.D8LH66|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.08e-57
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size651
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.1722918-CDS-P-littoralis_Contig1399:14619..152701680789645.1722918-CDS-P-littoralis_Contig1399:14619..15270Pylaiella littoralis U1_48CDSP-littoralis_Contig1399 14620..15270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1399.11.1prot_P-littoralis_Contig1399.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1399 14620..15270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1399.11.1

>prot_P-littoralis_Contig1399.11.1 ID=prot_P-littoralis_Contig1399.11.1|Name=mRNA_P-littoralis_Contig1399.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=217bp
MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLR
QGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLH
VAATKGFCQEMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVRVLLRA
NANPLLSADGSLPLYMAVYNGHLKVVRELVYWYGTDGCTSDGGALALATA
ASRNQVDIVTFLCDAGV
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mRNA from alignment at P-littoralis_Contig1399:14620..15270-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1399.11.1 ID=mRNA_P-littoralis_Contig1399.11.1|Name=mRNA_P-littoralis_Contig1399.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig1399:14620..15270- (Pylaiella littoralis U1_48)
ATGCCATCAACTCTGAGCAAAGCCAGCGGCTCCGTCGAGCGTCCGATTGC TACGACCGACATCGACCGACGCTGCGGTGATACGAACCAGACACCGCTGA TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTCCTGAGG CAGGGTGCCAGCGTCTCGCTAGCGGACAGCGACGGTTATCCTGCTCTGCA CCACGCGGTGTATCACAAACACCTGGCCGTGAGCAAAGACCTGATCGAGG CGGGAGCGGACCTTGACGCGAGGCCCGGTGGCATAGATACACCACTTCAC GTGGCCGCGACGAAAGGGTTTTGCCAAGAAATGGTGGTGCTGATCGACGC AGGCGCAAATGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTCG AAGCGGCAAAGGACGGGCGGCTCGAAGCGGTCAGGGTTCTCCTTCGGGCG AACGCGAATCCGCTCTTGTCTGCGGACGGCAGTCTCCCGCTATATATGGC GGTTTACAATGGACACCTGAAAGTGGTCCGCGAACTTGTGTATTGGTACG GAACCGACGGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGCC GCTTCTCGCAATCAGGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT G
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Coding sequence (CDS) from alignment at P-littoralis_Contig1399:14620..15270-

>mRNA_P-littoralis_Contig1399.11.1 ID=mRNA_P-littoralis_Contig1399.11.1|Name=mRNA_P-littoralis_Contig1399.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig1399:14620..15270- (Pylaiella littoralis U1_48)
ATGCCATCAACTCTGAGCAAAGCCAGCGGCTCCGTCGAGCGTCCGATTGC
TACGACCGACATCGACCGACGCTGCGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTCCTGAGG
CAGGGTGCCAGCGTCTCGCTAGCGGACAGCGACGGTTATCCTGCTCTGCA
CCACGCGGTGTATCACAAACACCTGGCCGTGAGCAAAGACCTGATCGAGG
CGGGAGCGGACCTTGACGCGAGGCCCGGTGGCATAGATACACCACTTCAC
GTGGCCGCGACGAAAGGGTTTTGCCAAGAAATGGTGGTGCTGATCGACGC
AGGCGCAAATGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTCG
AAGCGGCAAAGGACGGGCGGCTCGAAGCGGTCAGGGTTCTCCTTCGGGCG
AACGCGAATCCGCTCTTGTCTGCGGACGGCAGTCTCCCGCTATATATGGC
GGTTTACAATGGACACCTGAAAGTGGTCCGCGAACTTGTGTATTGGTACG
GAACCGACGGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGCC
GCTTCTCGCAATCAGGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT
G
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