mRNA_P-littoralis_Contig1399.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 234 bits (596), Expect = 8.860e-72 Identity = 115/170 (67.65%), Postives = 136/170 (80.00%), Query Frame = 2
Query: 284 TRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKKRKLVYTAPPAK 793
T A+ P ESLQHITS +VADLL+PLPG+DVFYKFGLKLYSL QN+NFRARKG K AR+CCSR GW + P++EAYDEILQILV+KT+EAV+ F IP Y DHF+ Y++SIL +K+ VPEQRKLY+RRRNKVLNNIAVSV + L R+ WS KKRKLVY A P +
Sbjct: 202 TTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 371
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 229 bits (584), Expect = 3.120e-71 Identity = 112/170 (65.88%), Postives = 135/170 (79.41%), Query Frame = 2
Query: 284 TRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKKRKLVYTAPPAK 793
T A+ P ESL+HI+ +VADLL+PLPG+DVFYKFGLKLYSL QN+NFRARKG K AR+CCSR GW + P++EAYDEILQILV+KT+EAV+ F IP Y DHF+ +++SIL YK+ VPEQRKLY+RRRNKVLNNIAVSV + L R+ WS KKRKLVY A P +
Sbjct: 104 TTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 273
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 191 bits (484), Expect = 1.950e-56 Identity = 102/174 (58.62%), Postives = 121/174 (69.54%), Query Frame = 2
Query: 266 LSLFVQTRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKKRKLVYTAPP 787
+ + T A+ P ESLQH TS F+ADLL+PLPG+DVF KFGLKLYSL QN+NFR RKG K AR+CCSR GW + P+EEAYDEILQILV+KT+EAV+ IL YK+ PEQRKLY+RRR +LNNIAVSV + + R+S WS KKRKLVY APP
Sbjct: 98 IEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVS-------------------IILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.690e-37 Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1
Query: 1 MALRHRKLRVKANPSCFDLSTLLEPVRTEYPNLIYLGIWYHDGYVYVYVQSAERMSDIMLTKALKDHMVITNIASYSTP 237
+A+ HRKLRV+A+PSCFDLST+LEPVRTEYPNLIYLGIW+HDG VYVYVQSAERMSDI LT ALKDHMVITNIA YS P
Sbjct: 6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSALKDHMVITNIAPYSIP 84
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 145 bits (367), Expect = 1.510e-36 Identity = 81/179 (45.25%), Postives = 113/179 (63.13%), Query Frame = 2
Query: 251 KRSGDLSLFVQTRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKK---RKLVYT 778
KR+ T + P ESLQHIT +V DLLK + VF+KFGLKLYSL QNVNFR RK R+ +++ W + K+EAYDEIL +LV+KT EAV + + ++HF + +L+ ++ VPE++KLY++RRNK L+ IAVSVN RLS+L W GK+ R +++T
Sbjct: 95 KRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKRVTLRSVLFT 272
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.020e-35 Identity = 79/170 (46.47%), Postives = 108/170 (63.53%), Query Frame = 2
Query: 251 KRSGDLSLFVQTRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKK 760
KR+ T + P ESLQHIT +V DLLK + VF+KFGLKLYSL QNVNFR RK R+ +++ W + K+EAYDEIL +LV+KT EAV + + ++HF + +L+ ++ PVPE++KLY++ RNK L+ IAVSVN RLS+L W GK+
Sbjct: 2223 KRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.850e-11 Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 2
Query: 305 PAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRA--RKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFE---KYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKKRKLV 772
P ESL HIT + +LL G DV ++FG KLY+LE+N+NF+ + G RL + W + K + +L+ L +EAV + KIP +++FE Y I D + +P RK + N + +N+A E+L R+ +GKK KL
Sbjct: 134 PIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFDLQE-DMPVYRKFIRDGFNVLASNMA----EKLRRIERDTGKKLKLT 288 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1399.3.1 >prot_P-littoralis_Contig1399.3.1 ID=prot_P-littoralis_Contig1399.3.1|Name=mRNA_P-littoralis_Contig1399.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp MESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKAback to top mRNA from alignment at P-littoralis_Contig1399:3157..3958+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1399.3.1 ID=mRNA_P-littoralis_Contig1399.3.1|Name=mRNA_P-littoralis_Contig1399.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=802bp|location=Sequence derived from alignment at P-littoralis_Contig1399:3157..3958+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1399:3157..3958+ >mRNA_P-littoralis_Contig1399.3.1 ID=mRNA_P-littoralis_Contig1399.3.1|Name=mRNA_P-littoralis_Contig1399.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig1399:3157..3958+ (Pylaiella littoralis U1_48)back to top |