mRNA_P-littoralis_Contig1399.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1399.3.1
Unique NamemRNA_P-littoralis_Contig1399.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 234 bits (596), Expect = 8.860e-72
Identity = 115/170 (67.65%), Postives = 136/170 (80.00%), Query Frame = 2
Query:  284 TRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKKRKLVYTAPPAK 793
            T A+   P   ESLQHITS +VADLL+PLPG+DVFYKFGLKLYSL QN+NFRARKG K AR+CCSR GW + P++EAYDEILQILV+KT+EAV+ F   IP  Y DHF+ Y++SIL +K+  VPEQRKLY+RRRNKVLNNIAVSV + L R+  WS KKRKLVY A P +
Sbjct:  202 TTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 371          
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 3.120e-71
Identity = 112/170 (65.88%), Postives = 135/170 (79.41%), Query Frame = 2
Query:  284 TRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKKRKLVYTAPPAK 793
            T A+   P   ESL+HI+  +VADLL+PLPG+DVFYKFGLKLYSL QN+NFRARKG K AR+CCSR GW + P++EAYDEILQILV+KT+EAV+ F   IP  Y DHF+ +++SIL YK+  VPEQRKLY+RRRNKVLNNIAVSV + L R+  WS KKRKLVY A P +
Sbjct:  104 TTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 273          
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.950e-56
Identity = 102/174 (58.62%), Postives = 121/174 (69.54%), Query Frame = 2
Query:  266 LSLFVQTRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKKRKLVYTAPP 787
            + +   T A+   P   ESLQH TS F+ADLL+PLPG+DVF KFGLKLYSL QN+NFR RKG K AR+CCSR GW + P+EEAYDEILQILV+KT+EAV+                    IL YK+   PEQRKLY+RRR  +LNNIAVSV + + R+S WS KKRKLVY APP
Sbjct:   98 IEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVS-------------------IILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250          
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.690e-37
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1
Query:    1 MALRHRKLRVKANPSCFDLSTLLEPVRTEYPNLIYLGIWYHDGYVYVYVQSAERMSDIMLTKALKDHMVITNIASYSTP 237
            +A+ HRKLRV+A+PSCFDLST+LEPVRTEYPNLIYLGIW+HDG VYVYVQSAERMSDI LT ALKDHMVITNIA YS P
Sbjct:    6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSALKDHMVITNIAPYSIP 84          
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.510e-36
Identity = 81/179 (45.25%), Postives = 113/179 (63.13%), Query Frame = 2
Query:  251 KRSGDLSLFVQTRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKK---RKLVYT 778
            KR+        T  +   P   ESLQHIT  +V DLLK    + VF+KFGLKLYSL QNVNFR RK     R+  +++ W +  K+EAYDEIL +LV+KT EAV  +   +    ++HF  +   +L+ ++  VPE++KLY++RRNK L+ IAVSVN RLS+L  W GK+   R +++T
Sbjct:   95 KRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKRVTLRSVLFT 272          
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.020e-35
Identity = 79/170 (46.47%), Postives = 108/170 (63.53%), Query Frame = 2
Query:  251 KRSGDLSLFVQTRALSSTPAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEKYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKK 760
            KR+        T  +   P   ESLQHIT  +V DLLK    + VF+KFGLKLYSL QNVNFR RK     R+  +++ W +  K+EAYDEIL +LV+KT EAV  +   +    ++HF  +   +L+ ++ PVPE++KLY++ RNK L+ IAVSVN RLS+L  W GK+
Sbjct: 2223 KRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391          
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.850e-11
Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  305 PAQMESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRA--RKGCKKARLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFE---KYAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKKRKLV 772
            P   ESL HIT   + +LL    G DV ++FG KLY+LE+N+NF+   + G    RL    + W +  K   +  +L+ L    +EAV  +  KIP   +++FE    Y   I D +   +P  RK  +   N + +N+A    E+L R+   +GKK KL 
Sbjct:  134 PIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFDLQE-DMPVYRKFIRDGFNVLASNMA----EKLRRIERDTGKKLKLT 288          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1399.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Q8QN59_ESV1K8.860e-7267.65EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LP42_ECTSI3.120e-7165.88EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K0V6_9PHAE1.950e-5658.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K135_9PHAE1.690e-3784.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC66_9PHAE1.510e-3645.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JH58_9PHAE1.020e-3546.47Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWA4_9PHAE1.850e-1133.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1399contigP-littoralis_Contig1399:3157..3958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size802
Hectar predicted targeting categoryother localisation
Exons1
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.9515028-UTR-P-littoralis_Contig1399:3156..34691680789644.9515028-UTR-P-littoralis_Contig1399:3156..3469Pylaiella littoralis U1_48UTRP-littoralis_Contig1399 3157..3469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.9602153-CDS-P-littoralis_Contig1399:3469..39581680789644.9602153-CDS-P-littoralis_Contig1399:3469..3958Pylaiella littoralis U1_48CDSP-littoralis_Contig1399 3470..3958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1399.3.1prot_P-littoralis_Contig1399.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1399 3470..3958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1399.3.1

>prot_P-littoralis_Contig1399.3.1 ID=prot_P-littoralis_Contig1399.3.1|Name=mRNA_P-littoralis_Contig1399.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
MESLQHITSVFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKA
RLCCSRNGWTSAPKEEAYDEILQILVQKTQEAVNKFTGKIPPCYIDHFEK
YAESILDYKNCPVPEQRKLYKRRRNKVLNNIAVSVNERLSRLSSWSGKKR
KLVYTAPPAKPA*
back to top

mRNA from alignment at P-littoralis_Contig1399:3157..3958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1399.3.1 ID=mRNA_P-littoralis_Contig1399.3.1|Name=mRNA_P-littoralis_Contig1399.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=802bp|location=Sequence derived from alignment at P-littoralis_Contig1399:3157..3958+ (Pylaiella littoralis U1_48)
ATGGCGCTGCGTCACAGGAAGCTCAGGGTGAAGGCGAACCCATCGTGCTT TGACTTGAGCACCTTGCTGGAACCTGTCCGTACGGAGTACCCGAATCTTA TCTACCTAGGTATATGGTATCATGACGGCTACGTGTACGTGTACGTGCAA AGCGCGGAGCGCATGTCCGACATTATGCTTACCAAAGCATTGAAGGACCA CATGGTCATAACTAACATCGCCTCGTACTCTACCCCTGGGGGCGAGCTGC AAGAGGAGTGGCGATCTAAGCCTGTTCGTGCAAACAAGAGCATTGTCGTC AACGCCGGCACAAATGGAGTCTCTGCAACACATCACGAGTGTTTTCGTCG CGGATTTGCTGAAACCCCTTCCTGGACTCGATGTCTTCTACAAATTTGGG TTAAAGCTGTACTCGTTAGAGCAAAACGTAAACTTCCGGGCACGCAAAGG GTGCAAGAAGGCCAGGTTGTGTTGTAGCCGCAATGGATGGACAAGCGCCC CAAAGGAAGAGGCATACGACGAGATCCTGCAAATCCTTGTGCAGAAGACC CAGGAAGCTGTAAACAAGTTCACCGGGAAAATCCCGCCTTGCTACATCGA TCATTTCGAGAAGTACGCAGAGAGCATCCTTGACTACAAGAACTGCCCCG TTCCCGAGCAGAGGAAGTTGTACAAGAGAAGGAGGAACAAAGTGCTGAAC AATATCGCTGTCAGCGTAAACGAGAGGTTGAGCCGGCTGAGTAGCTGGAG CGGCAAGAAGCGCAAGCTCGTCTACACAGCGCCTCCCGCGAAGCCCGCTT GA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1399:3157..3958+

>mRNA_P-littoralis_Contig1399.3.1 ID=mRNA_P-littoralis_Contig1399.3.1|Name=mRNA_P-littoralis_Contig1399.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig1399:3157..3958+ (Pylaiella littoralis U1_48)
ATGGAGTCTCTGCAACACATCACGAGTGTTTTCGTCGCGGATTTGCTGAA
ACCCCTTCCTGGACTCGATGTCTTCTACAAATTTGGGTTAAAGCTGTACT
CGTTAGAGCAAAACGTAAACTTCCGGGCACGCAAAGGGTGCAAGAAGGCC
AGGTTGTGTTGTAGCCGCAATGGATGGACAAGCGCCCCAAAGGAAGAGGC
ATACGACGAGATCCTGCAAATCCTTGTGCAGAAGACCCAGGAAGCTGTAA
ACAAGTTCACCGGGAAAATCCCGCCTTGCTACATCGATCATTTCGAGAAG
TACGCAGAGAGCATCCTTGACTACAAGAACTGCCCCGTTCCCGAGCAGAG
GAAGTTGTACAAGAGAAGGAGGAACAAAGTGCTGAACAATATCGCTGTCA
GCGTAAACGAGAGGTTGAGCCGGCTGAGTAGCTGGAGCGGCAAGAAGCGC
AAGCTCGTCTACACAGCGCCTCCCGCGAAGCCCGCTTGA
back to top