mRNA_P-littoralis_Contig139.23.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE) HSP 1 Score: 369 bits (948), Expect = 6.960e-117 Identity = 195/245 (79.59%), Postives = 205/245 (83.67%), Query Frame = 1
Query: 100 GPVRKVTCKQRPKLYSSTKISARLVEPWQDRSREWMDNKKESGGEKAQERGNTFSRAANEPSGNTSIPVMVKLL---------EGDIEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHLVTKYTVMMGSVVPALSGVLTGMLWNPNDAIDRANGSGDGIDPESKKKIGELMSIKVRVDTLRDLS 807
GPVRKV KQRPKLY+STKI ARLVEPWQD SREWM+ K+ESGGEKAQER T SRAANEP GNTSIPVMVKLL +GDIEISDGVYYKRAELRNLQYYYDKSYVLDP+NI VV G+T VKIDG +HVVKSVDHGKYTLEGRE TITQWEL+ RCDEGVTL LRRFILHLVTKYTVMMGSVVPAL+GVLT MLWNPNDA+ AN GD DPES K ELMSIK RVDTLRDLS
Sbjct: 176 GPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTGVLTVMLWNPNDAV--ANKCGDDTDPESNMKTSELMSIKERVDTLRDLS 418
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI) HSP 1 Score: 291 bits (744), Expect = 5.010e-91 Identity = 146/167 (87.43%), Postives = 149/167 (89.22%), Query Frame = 1
Query: 322 EGDIEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHLVTKYTVMMGSVVPALSGVLTGMLWNPNDAIDRANGSGDGIDPESKKKIGELMSIKVRVDTLRDLSLAVFT 822
EGDIEISDGVYYKRAELR LQYYYDKSY DPKNIGVVL ETGVKID RIH VKSVDHGKYTLEGRE ITQWEL+ NRCDE VTLD LRRFILHLVTKYTVMMGSVVPALSGV+TGMLWNPNDAIDRA+ SGD DPE K KI ELMSIKVRVDTLRDLSLAVFT
Sbjct: 103 EGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSGVVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFT 269
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI) HSP 1 Score: 150 bits (378), Expect = 3.480e-41 Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 1
Query: 322 EGDIEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHL 612
E DIEI +GVY+KR E+R+L+YYYDKSY+ DPK+IGVV GET V+IDG +HVVKSVD GKY LEG + TITQWEL+ NRC EGVTLD LRRFI HL
Sbjct: 103 EDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE) HSP 1 Score: 152 bits (384), Expect = 4.130e-38 Identity = 85/168 (50.60%), Postives = 112/168 (66.67%), Query Frame = 1
Query: 331 IEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHLVTKYTVMMGSVVPALS--GVLT-GMLWNPNDAIDRANGSGDGIDPESKKK-IGELMSIKVRVDTLRDLSLAVFT 822
++++D V +KR+EL L+YY+DK+Y+ +P +I VV+G T VKIDGRI VV+S DHGKY L G +P ITQWEL+ NR EG TLD LRRFI+ Y VMM VP G+ T GMLWN +A++RA D ID ES K + EL S++ + +R LSL +FT
Sbjct: 200 LKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGHKP-ITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIATEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFT 366
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI) HSP 1 Score: 134 bits (338), Expect = 6.510e-32 Identity = 101/258 (39.15%), Postives = 142/258 (55.04%), Query Frame = 1
Query: 97 SGPVRKVTCKQRPKLYSSTKISARLVEPW--QDRSREWMDNKKESGGEKAQERGNTFSRAANEP-SGNTSIPVMVKLLE--------GDIEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHLVTKYTVMMGSVVPAL-----SGVLTGMLWNPNDAIDRANGSGDGIDPESKKKIGELMSIKVRVDTLRDLSLAVFT 822
+G VRK ++ ++ + K AR++E D +++ + EKA+ NT R NEP S TSIP++ KLL IEI DGV++KRA L L+ Y++ YV DP++IGV LG T V ID VV+S D G+Y+L + QW ++ NR D GVTL+ RRFI+HLVT Y MM VVP + ++ M+WNP +A R +K++ EL I RV+TLRDL+L +FT
Sbjct: 668 AGNVRKRRVRKPARVVA--KEYARILEDVLNSDEMGTFVEASRAKAAEKAKHFENTCPRTPNEPPSSITSIPLIAKLLTRGLCDDPLDGIEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDGS-VMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEAGKRET---------NKERREELDQIINRVNTLRDLTLRIFT 913
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: A0A6H5JFX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX7_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 1.040e-7 Identity = 40/89 (44.94%), Postives = 43/89 (48.31%), Query Frame = 1
Query: 556 RCDEGVTLDACLRRFILHLVTKYTVMMGSVVPALSGVLTGMLWNPNDAIDRANGSGDGIDPESKKKIGELMSIKVRVDTLRDLSLAVFT 822
RCDEG++LD LRR AN SG G DPES K ELMSIKVRVDTLRD+SLAVFT
Sbjct: 78 RCDEGLSLDTNLRR-------------------------------------ANRSGGGTDPESNMKTSELMSIKVRVDTLRDVSLAVFT 129
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 2.840e-6 Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 331 IEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLE----GREPTITQWELMVNRCDEG---VTLDACLRRFILHLVTKYTVMMGSVVPALS 660
+E D VY+ + + Y+ ++P +IG+++GET VK+DG + V SV+ G Y+L + QWE++ NR +G TL+ R+F + L+ +Y M ++VP L+
Sbjct: 163 LEDLDEVYFN-VGTKGFKESYNMVSKVNPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHDGQGHATLEEDQRKFAISLILQYGNMWLTMVPYLN 278 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig139.23.1 >prot_P-littoralis_Contig139.23.1 ID=prot_P-littoralis_Contig139.23.1|Name=mRNA_P-littoralis_Contig139.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp MDVGGDVGGDFGGDGGDDDGGGSGSGRGRGGGSGPVRKVTCKQRPKLYSSback to top mRNA from alignment at P-littoralis_Contig139:103033..103879+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig139.23.1 ID=mRNA_P-littoralis_Contig139.23.1|Name=mRNA_P-littoralis_Contig139.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=847bp|location=Sequence derived from alignment at P-littoralis_Contig139:103033..103879+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig139:103033..103879+ >mRNA_P-littoralis_Contig139.23.1 ID=mRNA_P-littoralis_Contig139.23.1|Name=mRNA_P-littoralis_Contig139.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig139:103033..103879+ (Pylaiella littoralis U1_48)back to top |