mRNA_P-littoralis_Contig139.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig139.23.1
Unique NamemRNA_P-littoralis_Contig139.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 6.960e-117
Identity = 195/245 (79.59%), Postives = 205/245 (83.67%), Query Frame = 1
Query:  100 GPVRKVTCKQRPKLYSSTKISARLVEPWQDRSREWMDNKKESGGEKAQERGNTFSRAANEPSGNTSIPVMVKLL---------EGDIEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHLVTKYTVMMGSVVPALSGVLTGMLWNPNDAIDRANGSGDGIDPESKKKIGELMSIKVRVDTLRDLS 807
            GPVRKV  KQRPKLY+STKI ARLVEPWQD SREWM+ K+ESGGEKAQER  T SRAANEP GNTSIPVMVKLL         +GDIEISDGVYYKRAELRNLQYYYDKSYVLDP+NI VV G+T VKIDG +HVVKSVDHGKYTLEGRE TITQWEL+  RCDEGVTL   LRRFILHLVTKYTVMMGSVVPAL+GVLT MLWNPNDA+  AN  GD  DPES  K  ELMSIK RVDTLRDLS
Sbjct:  176 GPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTGVLTVMLWNPNDAV--ANKCGDDTDPESNMKTSELMSIKERVDTLRDLS 418          
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 5.010e-91
Identity = 146/167 (87.43%), Postives = 149/167 (89.22%), Query Frame = 1
Query:  322 EGDIEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHLVTKYTVMMGSVVPALSGVLTGMLWNPNDAIDRANGSGDGIDPESKKKIGELMSIKVRVDTLRDLSLAVFT 822
            EGDIEISDGVYYKRAELR LQYYYDKSY  DPKNIGVVL ETGVKID RIH VKSVDHGKYTLEGRE  ITQWEL+ NRCDE VTLD  LRRFILHLVTKYTVMMGSVVPALSGV+TGMLWNPNDAIDRA+ SGD  DPE K KI ELMSIKVRVDTLRDLSLAVFT
Sbjct:  103 EGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSGVVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFT 269          
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 3.480e-41
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 1
Query:  322 EGDIEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHL 612
            E DIEI +GVY+KR E+R+L+YYYDKSY+ DPK+IGVV GET V+IDG +HVVKSVD GKY LEG + TITQWEL+ NRC EGVTLD  LRRFI HL
Sbjct:  103 EDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199          
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 4.130e-38
Identity = 85/168 (50.60%), Postives = 112/168 (66.67%), Query Frame = 1
Query:  331 IEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHLVTKYTVMMGSVVPALS--GVLT-GMLWNPNDAIDRANGSGDGIDPESKKK-IGELMSIKVRVDTLRDLSLAVFT 822
            ++++D V +KR+EL  L+YY+DK+Y+ +P +I VV+G T VKIDGRI VV+S DHGKY L G +P ITQWEL+ NR  EG TLD  LRRFI+     Y VMM   VP     G+ T GMLWN  +A++RA    D ID ES K  + EL S++   + +R LSL +FT
Sbjct:  200 LKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGHKP-ITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIATEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFT 366          
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 6.510e-32
Identity = 101/258 (39.15%), Postives = 142/258 (55.04%), Query Frame = 1
Query:   97 SGPVRKVTCKQRPKLYSSTKISARLVEPW--QDRSREWMDNKKESGGEKAQERGNTFSRAANEP-SGNTSIPVMVKLLE--------GDIEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRFILHLVTKYTVMMGSVVPAL-----SGVLTGMLWNPNDAIDRANGSGDGIDPESKKKIGELMSIKVRVDTLRDLSLAVFT 822
            +G VRK   ++  ++ +  K  AR++E     D    +++  +    EKA+   NT  R  NEP S  TSIP++ KLL           IEI DGV++KRA L  L+ Y++  YV DP++IGV LG T V ID    VV+S D G+Y+L      + QW ++ NR D GVTL+   RRFI+HLVT Y  MM  VVP +       ++  M+WNP +A  R           +K++  EL  I  RV+TLRDL+L +FT
Sbjct:  668 AGNVRKRRVRKPARVVA--KEYARILEDVLNSDEMGTFVEASRAKAAEKAKHFENTCPRTPNEPPSSITSIPLIAKLLTRGLCDDPLDGIEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDGS-VMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEAGKRET---------NKERREELDQIINRVNTLRDLTLRIFT 913          
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: A0A6H5JFX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.040e-7
Identity = 40/89 (44.94%), Postives = 43/89 (48.31%), Query Frame = 1
Query:  556 RCDEGVTLDACLRRFILHLVTKYTVMMGSVVPALSGVLTGMLWNPNDAIDRANGSGDGIDPESKKKIGELMSIKVRVDTLRDLSLAVFT 822
            RCDEG++LD  LRR                                     AN SG G DPES  K  ELMSIKVRVDTLRD+SLAVFT
Sbjct:   78 RCDEGLSLDTNLRR-------------------------------------ANRSGGGTDPESNMKTSELMSIKVRVDTLRDVSLAVFT 129          
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.840e-6
Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  331 IEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLE----GREPTITQWELMVNRCDEG---VTLDACLRRFILHLVTKYTVMMGSVVPALS 660
            +E  D VY+     +  +  Y+    ++P +IG+++GET VK+DG  + V SV+ G Y+L          + QWE++ NR  +G    TL+   R+F + L+ +Y  M  ++VP L+
Sbjct:  163 LEDLDEVYFN-VGTKGFKESYNMVSKVNPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHDGQGHATLEEDQRKFAISLILQYGNMWLTMVPYLN 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE6.960e-11779.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ27_ECTSI5.010e-9187.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQV3_ECTSI3.480e-4172.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6S7_9PHAE4.130e-3850.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPM1_ECTSI6.510e-3239.15PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JFX7_9PHAE1.040e-744.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK98_9PHAE2.840e-631.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:103033..103879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FHJ0
Model size822
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.02e-15
EggNOG OGs2EVBK@1|root,2SXC2@2759|Eukaryota
Cds size822
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789640.7542644-CDS-P-littoralis_Contig139:103032..1033541680789640.7542644-CDS-P-littoralis_Contig139:103032..103354Pylaiella littoralis U1_48CDSP-littoralis_Contig139 103033..103354 +
1680789640.7651386-CDS-P-littoralis_Contig139:103379..1038791680789640.7651386-CDS-P-littoralis_Contig139:103379..103879Pylaiella littoralis U1_48CDSP-littoralis_Contig139 103380..103879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.23.1prot_P-littoralis_Contig139.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig139 103033..103879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig139.23.1

>prot_P-littoralis_Contig139.23.1 ID=prot_P-littoralis_Contig139.23.1|Name=mRNA_P-littoralis_Contig139.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
MDVGGDVGGDFGGDGGDDDGGGSGSGRGRGGGSGPVRKVTCKQRPKLYSS
TKISARLVEPWQDRSREWMDNKKESGGEKAQERGNTFSRAANEPSGNTSI
PVMVKLLEGDIEISDGVYYKRAELRNLQYYYDKSYVLDPKNIGVVLGETG
VKIDGRIHVVKSVDHGKYTLEGREPTITQWELMVNRCDEGVTLDACLRRF
ILHLVTKYTVMMGSVVPALSGVLTGMLWNPNDAIDRANGSGDGIDPESKK
KIGELMSIKVRVDTLRDLSLAVFT
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mRNA from alignment at P-littoralis_Contig139:103033..103879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig139.23.1 ID=mRNA_P-littoralis_Contig139.23.1|Name=mRNA_P-littoralis_Contig139.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=847bp|location=Sequence derived from alignment at P-littoralis_Contig139:103033..103879+ (Pylaiella littoralis U1_48)
ATGGACGTTGGTGGCGACGTTGGTGGCGACTTTGGTGGAGATGGCGGCGA TGACGACGGTGGCGGCAGTGGCAGCGGCAGGGGGAGAGGGGGAGGGAGCG GCCCCGTGCGAAAGGTCACGTGCAAACAACGACCAAAGCTATACTCTTCG ACCAAAATAAGCGCACGCCTGGTTGAGCCGTGGCAGGACAGAAGTCGCGA GTGGATGGACAACAAGAAAGAGTCGGGTGGTGAAAAAGCTCAGGAGAGGG GTAATACGTTTTCTCGCGCAGCAAATGAACCCAGCGGAAACACTTCGATA CCGGTCATGGTCAAACTCCTGGGTGATGGCCTTTGCTGACCAGTGAGAGG GTGATATCGAGATCTCAGATGGGGTGTACTACAAGCGTGCCGAGTTAAGG AACTTGCAGTATTACTACGACAAGTCCTACGTGTTGGACCCGAAGAATAT CGGTGTGGTTCTCGGTGAGACGGGCGTCAAGATCGATGGCCGAATCCACG TGGTGAAATCAGTCGATCACGGCAAATACACACTGGAAGGTCGGGAACCC ACAATCACCCAGTGGGAGCTTATGGTAAACCGGTGCGATGAGGGGGTGAC ACTGGACGCCTGCCTCCGGCGGTTCATCCTGCATCTGGTGACAAAGTATA CGGTCATGATGGGTTCGGTTGTACCGGCTCTCAGCGGCGTGCTCACTGGG ATGCTCTGGAACCCGAACGATGCCATCGACAGAGCCAATGGGAGTGGTGA CGGCATCGATCCAGAGAGCAAAAAGAAGATTGGCGAGCTGATGTCGATCA AAGTGCGCGTGGATACTCTGCGGGACTTGTCGCTGGCTGTCTTCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig139:103033..103879+

>mRNA_P-littoralis_Contig139.23.1 ID=mRNA_P-littoralis_Contig139.23.1|Name=mRNA_P-littoralis_Contig139.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig139:103033..103879+ (Pylaiella littoralis U1_48)
ATGGACGTTGGTGGCGACGTTGGTGGCGACTTTGGTGGAGATGGCGGCGA
TGACGACGGTGGCGGCAGTGGCAGCGGCAGGGGGAGAGGGGGAGGGAGCG
GCCCCGTGCGAAAGGTCACGTGCAAACAACGACCAAAGCTATACTCTTCG
ACCAAAATAAGCGCACGCCTGGTTGAGCCGTGGCAGGACAGAAGTCGCGA
GTGGATGGACAACAAGAAAGAGTCGGGTGGTGAAAAAGCTCAGGAGAGGG
GTAATACGTTTTCTCGCGCAGCAAATGAACCCAGCGGAAACACTTCGATA
CCGGTCATGGTCAAACTCCTGGAGGGTGATATCGAGATCTCAGATGGGGT
GTACTACAAGCGTGCCGAGTTAAGGAACTTGCAGTATTACTACGACAAGT
CCTACGTGTTGGACCCGAAGAATATCGGTGTGGTTCTCGGTGAGACGGGC
GTCAAGATCGATGGCCGAATCCACGTGGTGAAATCAGTCGATCACGGCAA
ATACACACTGGAAGGTCGGGAACCCACAATCACCCAGTGGGAGCTTATGG
TAAACCGGTGCGATGAGGGGGTGACACTGGACGCCTGCCTCCGGCGGTTC
ATCCTGCATCTGGTGACAAAGTATACGGTCATGATGGGTTCGGTTGTACC
GGCTCTCAGCGGCGTGCTCACTGGGATGCTCTGGAACCCGAACGATGCCA
TCGACAGAGCCAATGGGAGTGGTGACGGCATCGATCCAGAGAGCAAAAAG
AAGATTGGCGAGCTGATGTCGATCAAAGTGCGCGTGGATACTCTGCGGGA
CTTGTCGCTGGCTGTCTTCACC
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